GZMM Gene
protein-coding GIFtS: 53
GCID: GC19P000544
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|
granzyme M (lymphocyte met-ase 1)
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Aliases
for GZMM gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Granzyme M (Lymphocyte Met-Ase 1)1 2 | | Lymphocyte Met-Ase 12 | | MET11 2 3 | | Met-Ase1 | | LMET11 2 | | EC 3.4.21.-3 | | Natural Killer Cell Granular Protease2 3 | | Hu-Met-13 | | Met-1 Serine Protease2 3 | | Met-Ase1 | | HU-Met-12 | | EC 3.4.218 | | Granzyme M2 | | |
Export aliases for GZMM gene to outside databasesPrevious GC identifers: GC19P000554 GC19P000579 GC19P000484 GC19P000495 GC19P000314 |
Summaries
for GZMM gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for GZMM:
Human natural killer (NK) cells and activated lymphocytes express and store a distinct subset of neutral serineproteases together with proteoglycans and other immune effector molecules in large cytoplasmic granules. These serineproteases are collectively termed granzymes and include 4 distinct gene products: granzyme A, granzyme B, granzyme H,and the protein encoded by this gene, granzyme M. Two transcript variants encoding different isoforms have been foundfor this gene. (provided by RefSeq, Apr 2012)
UniProtKB/Swiss-Prot: GRAM_HUMAN, P51124Function: Cleaves peptide substrates after methionine, leucine, and norleucine. Physiological substrates include EZR,alpha-tubulins and the apoptosis inhibitor BIRC5/Survivin. Promotes caspase activation and subsequent apoptosis oftarget cells
Gene Wiki entry for GZMM
|
Genomic Views
for GZMM gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011255.14
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the GZMM gene promoter:
ATF-2 MyoD c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for GZMM
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GZMM |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3GZMM Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P000544: view genomic region
(about GC identifiers)
Start:
|
544,027 bp from pter |
End:
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549,919 bp from pter |
Size:
|
5,893 bases |
Orientation:
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plus strand |
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Proteins
for GZMM gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: GRAM_HUMAN, P51124 (See
protein sequence)Recommended Name: Granzyme M precursor Size: 257 amino acids; 27545 Da
Subcellular location: Secreted. Cytoplasmic granule. Note=Granules of large granular lymphocytes
5 PDB 3D structures from  and Proteopedia  for GZMM:1LZP (3D)
2ZGC (3D)
2ZGH (3D)
2ZGJ (3D)
2ZKS (3D)
Explore the universe of human proteins at neXtProt for GZMM: NX_P51124
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_P51124
4/8 DME Specific Peptides for GZMM (P51124) (see all 8)
GZMM Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001245280.1 NP_005308.1
ENSEMBL proteins: ENSP00000264553 Reactome Protein details: P51124
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- |
GZMM for ontologies About GeneDecksing
GZMM Antibody Products:
Assay Products for GZMM: |
Protein
Domains /
Families
for GZMM gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
GZMM for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry P51124ProtoNet protein and cluster: P51124 2 Blocks protein families: IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature
UniProtKB/Swiss-Prot: GRAM_HUMAN, P51124Similarity: Belongs to the peptidase S1 family. Granzyme subfamilySimilarity: Contains 1 peptidase S1 domain |
Function
for GZMM gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: GRAM_HUMAN, P51124Function: Cleaves peptide substrates after methionine, leucine, and norleucine. Physiological substrates include EZR,alpha-tubulins and the apoptosis inhibitor BIRC5/Survivin. Promotes caspase activation and subsequent apoptosis oftarget cells Genatlas biochemistry entry for GZMM:natural killer cells granule serine protease,cleaving after methionine (Met-ase)
Enzyme Numbers (IUBMB): EC 3.4.212 EC 3.4.21.-1
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GZMM
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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Synthesis Service for GZMM | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GZMM |
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
GZMM for ontologies About GeneDecksing
4 GenomeRNAi human phenotypes for GZMM:
Animal Models:
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Gzmm):
GZMM for phenotypes About GeneDecksing
|
Pathways & Interactions
for GZMM gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Immune System | | | 2 | Cleavage of Alpha-1-Microglobulin | | | 3 | Granzyme Pathway | | | 4 | Activation of C3 and C5 | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for GZMM
5 
Reactome Pathways for GZMM
GZMM for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GZMM
5/12 Interacting proteins for GZMM (P511243) via UniProtKB, MINT, STRING, and/or I2D (see all 12)About this table
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table
GZMM for ontologies About GeneDecksing
|
Drugs & Compounds
for GZMM gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
GZMM for compounds About GeneDecksing
 Browse Tocris compounds for GZMM
1 Novoseek chemical compound relationship for GZMM gene About this table
Search CenterWatch for drugs/clinical trials and news about GZMM / GRAM
|
Transcripts
for GZMM gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for GZMM gene (2 alternative transcripts): NM_001258351.1 NM_005317.3 Unigene Cluster for GZMM: Granzyme M (lymphocyte met-ase 1) Hs.465511 [show with all ESTs]Unigene Representative Sequence: NM_0053172 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000592501 ENST00000264553(uc002low.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GZMM (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GZMM
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: GZMM (NM_005317) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GZMM | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GZMM |
Additional cDNA sequence: BC025701.1 L23134.1 1 DOTS entry: DT.400411 12 AceView cDNA sequences: L23134 NM_005317 BM987422 BC025701 BI835971 CD366947 BI823094 BI838272 AI910778 AW044312 AI124941 T91241
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for GZMM About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b |
|---|
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| SP1: | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for GZMM
|
Expression
for GZMM gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| GZMM expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTCTGCCTGG
About this image
See GZMM Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for GZMM
SOURCE GeneReport for Unigene cluster: Hs.465511
UniProtKB/Swiss-Prot: GRAM_HUMAN, P51124Tissue specificity: Highly and constitutively expressed in activated natural killer (NK) cells
SABiosciences Custom PCR Arrays for GZMM
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for GZMM
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat GZMM | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GZMM | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GZMM |
Orthologs
for GZMM gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for GZMM gene from 3/13 species (see all 13) About this table
ENSEMBL Gene Tree for GZMM (if available)
TreeFam Gene Tree for GZMM (if available) |
Paralogs
for GZMM gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for GZMM gene
- PRTN32 GZMH2 GZMK2 PRSS572 CTSG2 CFD2 ELANE2 CMA12
- AZU12 GZMA2 GZMB2
18/70 SIMAP similar genes for GZMM using alignment to 1 protein entry: GRAM_HUMAN(see all similar genes):KLK4 PRSS57 DF KLK8 PRSSL1 CFD
PRSS1 CELA3A F12 GZMK KLK5 CTRB1
CTRB2 CTRL CTSG KLK9 CELA1 CORIN
GZMM for paralogs About GeneDecksing
|
Genomic Variants
for GZMM gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for GZMM (544027 - 549919 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for GZMM
1 CNV: 30050 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing GZMM |
|
Disorders
/ Diseases
for GZMM gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
GZMM for disorders About GeneDecksing
OMIM gene information: 600311
OMIM disorders: --
1  disease for GZMM: About MalaCardsarrhythmogenic right ventricular dysplasia
2 Novoseek disease relationships for GZMM gene About this table
Export disorders for GZMM gene to outside databases
|
Publications
for GZMM gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for GZMM gene, integrated from 9 sources (see all 32):
(articles sorted by number of sources associating them with GZMM) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Cleavage of survivin by Granzyme M triggers degradati on of the survivin-X-linked inhibitor of apoptosis protein (XIAP) complex to fr ee caspase activity leading to cytolysis of target tumor cells. (PubMed id 20406824)1, 2, 9 Hu D....Fan Z. (2010)
- Structural basis for proteolytic specificity of the h uman apoptosis-inducing granzyme M. (PubMed id 19542453)1, 2, 9 Wu L....Fan Z. (2009)
- Met-ase: cloning and distinct chromosomal location of a serine protease preferentially expressed in human natural killer cells. (PubMed id 8245461)1, 2, 9 Smyth M.J.... Trapani J.A. (1993)
- The human Met-ase gene (GZMM): structure, sequence, and close physical linkage to the serine protease gene cluster on 19p13.3. (PubMed id 7713495)1, 2, 9 Pilat D.... Jenne D.E. (1994)
- NK cell protease granzyme M targets alpha-tubulin and disorganizes the microtubule network. (PubMed id 18523284)1, 2 Bovenschen N....Kummer J.A. (2008)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The gene encoding a human natural killer cell granule serine protease, Met-ase 1, maps to chromosome 19p13.3. (PubMed id 8119738)1, 3 Baker E....Smyth M.J. (1994)
- Granzyme M is a regulatory protease that inactivates proteinase inhibitor 9, an endogenous inhibitor of granzyme B. (PubMed id 15494398)1, 9 Mahrus S....Craik C.S. (2004)
- Granzyme M mediates a novel form of perforin-dependent cell death. (PubMed id 15028722)1, 9 Kelly J.M....Smyth M.J. (2004)
- Nucleophosmin is cleaved and inactivated by the cytotoxic granule protease granzyme M during natural killer cell-mediated killing. (PubMed id 19103589)1, 9 Cullen S.P....Martin S.J. (2009)
|
External Searches for GZMM gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing GZMM gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing GZMM gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GZMM gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for GZMM | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for GZMM gene:
Search GeneIP for patents involving GZMM
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for GZMM gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for GZMM | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for GZMM | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for GZMM | | | OriGene Protein Over-expression Lysate for GZMM | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for GZMM | | OriGene 3'-UTR Clone for GZMM | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GZMM | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GZMM | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for GZMM | | OriGene Custom Protein Services for GZMM | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat GZMM | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing GZMM | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GZMM | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat GZMM | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GZMM | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GZMM |
| |
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| |  |  |  |  | | | | |
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 | | | GZMM Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | | Search ThermoFisher Antibodies for GZMM |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GZMM |
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