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Aliases for GYG1 Gene

Aliases for GYG1 Gene

  • Glycogenin 1 2 3
  • Glycogenin Glucosyltransferase 2 3
  • EC 2.4.1.186 4 63
  • GSD15 3 6
  • GN-1 3 4
  • GYG 3 4
  • Glycogenin-1 3
  • Glycogenin 2
  • GN1 4

External Ids for GYG1 Gene

Previous Symbols for GYG1 Gene

  • GYG

Summaries for GYG1 Gene

Entrez Gene Summary for GYG1 Gene

  • This gene encodes a member of the glycogenin family. Glycogenin is a glycosyltransferase that catalyzes the formation of a short glucose polymer from uridine diphosphate glucose in an autoglucosylation reaction. This reaction is followed by elongation and branching of the polymer, catalyzed by glycogen synthase and branching enzyme, to form glycogen. This gene is expressed in muscle and other tissues. Mutations in this gene result in glycogen storage disease XV. This gene has pseudogenes on chromosomes 1, 8 and 13 respectively. Alternatively spliced transcript variants encoding different isoforms have been identified.[provided by RefSeq, Sep 2010]

GeneCards Summary for GYG1 Gene

GYG1 (Glycogenin 1) is a Protein Coding gene. Diseases associated with GYG1 include glycogen storage disease xv and polyglucosan body myopathy 2. Among its related pathways are Metabolism and Insulin Signaling. GO annotations related to this gene include glucose binding and glycogenin glucosyltransferase activity. An important paralog of this gene is GYG2.

UniProtKB/Swiss-Prot for GYG1 Gene

  • Self-glucosylates, via an inter-subunit mechanism, to form an oligosaccharide primer that serves as substrate for glycogen synthase

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GYG1 Gene

Genomics for GYG1 Gene

Genomic Location for GYG1 Gene

Start:
148,991,341 bp from pter
End:
149,027,669 bp from pter
Size:
36,329 bases
Orientation:
Plus strand

Genomic View for GYG1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GYG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GYG1 Gene

Regulatory Elements for GYG1 Gene

Proteins for GYG1 Gene

  • Protein details for GYG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P46976-GLYG_HUMAN
    Recommended name:
    Glycogenin-1
    Protein Accession:
    P46976
    Secondary Accessions:
    • D3DNH0
    • D3DNH1
    • D3DNH2
    • Q6FHZ1
    • Q9UNV0

    Protein attributes for GYG1 Gene

    Size:
    350 amino acids
    Molecular mass:
    39384 Da
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Note=Divalent metal ions. Required for self-glucosylation. Manganese is the most effective.;
    Quaternary structure:
    • Homodimer tightly complexed to the 86 kDa catalytic subunit of glycogen synthase GYS1 (By similarity). Interacts (via C-terminus) with GYS2 (PubMed:17055998). This interaction is required for GYS2-mediated glycogen synthesis (By similarity).

    Three dimensional structures from OCA and Proteopedia for GYG1 Gene

    Alternative splice isoforms for GYG1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GYG1 Gene

Proteomics data for GYG1 Gene at MOPED

Selected DME Specific Peptides for GYG1 Gene

Post-translational modifications for GYG1 Gene

  • Phosphorylated.
  • Self-glycosylated by the transfer of glucose residues from UDP-glucose to itself, forming an alpha-1,4-glycan of around 10 residues attached to Tyr-195
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys209
  • Glycosylation at Tyr195

Other Protein References for GYG1 Gene

Domains for GYG1 Gene

Gene Families for GYG1 Gene

HGNC:
  • GLT8 :Glycosyltransferase family 8 domain containing

Protein Domains for GYG1 Gene

Suggested Antigen Peptide Sequences for GYG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P46976

UniProtKB/Swiss-Prot:

GLYG_HUMAN
Family:
  • Belongs to the glycosyltransferase 8 family. Glycogenin subfamily.:
    • P46976
genes like me logo Genes that share domains with GYG1: view

Function for GYG1 Gene

Molecular function for GYG1 Gene

UniProtKB/Swiss-Prot CatalyticActivity: UDP-alpha-D-glucose + glycogenin = UDP + alpha-D-glucosylglycogenin
UniProtKB/Swiss-Prot Function: Self-glucosylates, via an inter-subunit mechanism, to form an oligosaccharide primer that serves as substrate for glycogen synthase

Enzyme Numbers (IUBMB) for GYG1 Gene

Gene Ontology (GO) - Molecular Function for GYG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0005536 glucose binding IEA --
GO:0008466 glycogenin glucosyltransferase activity EXP --
GO:0016757 transferase activity, transferring glycosyl groups --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with GYG1: view

miRNA for GYG1 Gene

miRTarBase miRNAs that target GYG1

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for GYG1 Gene

Localization for GYG1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GYG1 Gene COMPARTMENTS Subcellular localization image for GYG1 gene
Compartment Confidence
cytosol 4
nucleus 2
extracellular 1
golgi apparatus 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for GYG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0016020 membrane IDA 19946888
GO:0043202 lysosomal lumen TAS --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with GYG1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for GYG1 Gene

Pathways for GYG1 Gene

genes like me logo Genes that share pathways with GYG1: view

UniProtKB/Swiss-Prot P46976-GLYG_HUMAN

  • Pathway: Glycan biosynthesis; glycogen biosynthesis

Gene Ontology (GO) - Biological Process for GYG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process TAS --
GO:0005978 glycogen biosynthetic process TAS --
GO:0005980 glycogen catabolic process TAS --
GO:0006006 glucose metabolic process TAS --
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with GYG1: view

Compounds for GYG1 Gene

(3) HMDB Compounds for GYG1 Gene

Compound Synonyms Cas Number PubMed IDs
Manganese
  • manganese
7439-96-5
Uridine 5'-diphosphate
  • 5'-UDP
58-98-0
Uridine diphosphate glucose
  • (UPD)-glucose
133-89-1

(2) Drugbank Compounds for GYG1 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Uridine-5'-Diphosphate
58-98-0 target
Uridine-5'-Monophosphate Glucopyranosyl-Monophosphateester
target

(8) Novoseek inferred chemical compound relationships for GYG1 Gene

Compound -log(P) Hits PubMed IDs
cdp-d-glucose 86 1
glycogen 83.9 79
udpglucose 75.7 7
udpxylose 75.4 2
glucose 47.1 19
genes like me logo Genes that share compounds with GYG1: view

Transcripts for GYG1 Gene

Unigene Clusters for GYG1 Gene

Glycogenin 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GYG1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13a ·
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - - - - -
SP4: - - - - - - - - -
SP5: - - - - - - - -
SP6:
SP7: - -
SP8: -
SP9: - - - - -
SP10:
SP11: - -

ExUns: 13b · 13c
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for GYG1 Gene

GeneLoc Exon Structure for
GYG1
ECgene alternative splicing isoforms for
GYG1

Expression for GYG1 Gene

mRNA expression in normal human tissues for GYG1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GYG1 Gene

This gene is overexpressed in Whole Blood (8.9) and Muscle - Skeletal (8.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GYG1 Gene

SOURCE GeneReport for Unigene cluster for GYG1 Gene Hs.477892

genes like me logo Genes that share expressions with GYG1: view

No data available for mRNA Expression by UniProt/SwissProt for GYG1 Gene

Orthologs for GYG1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GYG1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GYG1 35
  • 99.62 (n)
  • 99.43 (a)
GYG1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GYG1 35
  • 91.69 (n)
  • 93.39 (a)
GYG1 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GYG1 35
  • 93.2 (n)
  • 94.54 (a)
GYG1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gyg 35
  • 86.99 (n)
  • 86.19 (a)
Gyg 16
Gyg 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GYG1 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GYG1 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gyg1 35
  • 87.09 (n)
  • 86.49 (a)
chicken
(Gallus gallus)
Aves GYG1 35
  • 73.19 (n)
  • 71.69 (a)
GYG1 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GYG1 36
  • 63 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia LOC398319 35
tropical clawed frog
(Silurana tropicalis)
Amphibia gyg1 35
  • 72.14 (n)
  • 72.64 (a)
MGC76101 35
zebrafish
(Danio rerio)
Actinopterygii Dr.13604 35
gyg1a 36
  • 63 (a)
OneToMany
gyg1b 35
  • 65.2 (n)
  • 65.83 (a)
gyg1b 36
  • 64 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007724 35
  • 55.13 (n)
  • 53.97 (a)
fruit fly
(Drosophila melanogaster)
Insecta Glycogenin 35
  • 55.31 (n)
  • 56.15 (a)
Glycogenin 36
  • 24 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea gyg-1 36
  • 34 (a)
ManyToMany
gyg-2 36
  • 48 (a)
ManyToMany
M116.2 36
  • 48 (a)
ManyToMany
T10B10.8 36
  • 15 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GLG1 36
  • 16 (a)
ManyToMany
GLG1 38
GLG2 36
  • 24 (a)
ManyToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU06698 35
  • 50.14 (n)
  • 41.45 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 49 (a)
OneToMany
Species with no ortholog for GYG1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GYG1 Gene

ENSEMBL:
Gene Tree for GYG1 (if available)
TreeFam:
Gene Tree for GYG1 (if available)

Paralogs for GYG1 Gene

Paralogs for GYG1 Gene

Selected SIMAP similar genes for GYG1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for GYG1 Gene

genes like me logo Genes that share paralogs with GYG1: view

Variants for GYG1 Gene

Sequence variations from dbSNP and Humsavar for GYG1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs3347 -- 149,027,449(+) AACCA(A/G)TAGCA utr-variant-3-prime
rs4938 -- 149,009,346(+) CTGCC(A/G)TTTAT synonymous-codon, reference
rs1270002 -- 149,016,000(-) caggc(A/C/G)tgagc intron-variant
rs1271540 -- 149,016,022(-) gcctc(C/T)caaag intron-variant
rs1987447 -- 149,020,840(+) CTGTG(A/G)CTCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GYG1 Gene

Variant ID Type Subtype PubMed ID
nsv829751 CNV Loss 17160897
nsv829752 CNV Loss 17160897
nsv829753 CNV Gain 17160897
esv2675130 CNV Deletion 23128226

Relevant External Links for GYG1 Gene

HapMap Linkage Disequilibrium report
GYG1
Human Gene Mutation Database (HGMD)
GYG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GYG1 Gene

Disorders for GYG1 Gene

(1) OMIM Diseases for GYG1 Gene (603942)

UniProtKB/Swiss-Prot

GLYG_HUMAN
  • Glycogen storage disease 15 (GSD15) [MIM:613507]: A metabolic disorder resulting in muscle weakness, associated with the glycogen depletion in skeletal muscle, and cardiac arrhythmia, associated with the accumulation of abnormal storage material in the heart. The skeletal muscle shows a marked predominance of slow-twitch, oxidative muscle fibers and mitochondrial proliferation. {ECO:0000269 PubMed:20357282}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Polyglucosan body myopathy 2 (PGBM2) [MIM:616199]: A glycogen storage disease characterized by polyglucosan accumulation in muscle, and skeletal myopathy without cardiac involvement. Most patients manifest slowly progressive, hip girdle, shoulder girdle, and/or hand and leg muscle weakness. Polyglucosan contains abnormally long and poorly branched glucosyl chains and is variably resistant to digestion by alpha-amylase. {ECO:0000269 PubMed:25272951}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(3) University of Copenhagen DISEASES for GYG1 Gene

(1) Novoseek inferred disease relationships for GYG1 Gene

Disease -log(P) Hits PubMed IDs
niddm 5.6 2
genes like me logo Genes that share disorders with GYG1: view

Publications for GYG1 Gene

  1. The human skeletal muscle glycogenin gene: cDNA, tissue expression and chromosomal localization. (PMID: 8602861) Barbetti F. … Consalez G.G. (Biochem. Biophys. Res. Commun. 1996) 2 3 4 23
  2. The human intron-containing gene for glycogenin maps to chromosome 3, band q24. (PMID: 8661012) Lomako J. … Rodriguez I.R. (Genomics 1996) 3 4 23
  3. Characterization of the human glycogenin-1 gene: identification of a muscle-specific regulatory domain. (PMID: 10395894) van Maanen M.-H. … Abraham L.J. (Gene 1999) 3 4 23
  4. Structure and chromosomal localization of the human glycogenin-2 gene GYG2. (PMID: 10721716) Zhai L. … Roach P.J. (Gene 2000) 3 4 23
  5. Interaction between glycogenin and glycogen synthase. (PMID: 17055998) Skurat A.V. … Roach P.J. (Arch. Biochem. Biophys. 2006) 3 4 23

Products for GYG1 Gene

Sources for GYG1 Gene

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