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Aliases for GTSE1-AS1 Gene

Subcategory (RNA class) for GTSE1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for GTSE1-AS1 Gene

  • GTSE1 Antisense RNA 1 (Head To Head) 2 3 5
  • LL22NC03-5H6.6 3
  • CN5H6.4 3

External Ids for GTSE1-AS1 Gene

ORGUL Members for GTSE1-AS1 Gene

Previous GeneCards Identifiers for GTSE1-AS1 Gene

  • GC22M046697
  • GC22M046700

Summaries for GTSE1-AS1 Gene

GeneCards Summary for GTSE1-AS1 Gene

GTSE1-AS1 (GTSE1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTSE1-AS1 Gene

Genomics for GTSE1-AS1 Gene

Regulatory Elements for GTSE1-AS1 Gene

Enhancers for GTSE1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G046294 1.1 ENCODE 0.7 +0.3 269 3.1 HDGF PKNOX1 CREB3L1 AGO1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TTC38 PKDREJ CDPF1 TRMU GTSE1 GTSE1-AS1
GH22G046314 0.7 ENCODE 0.4 -17.8 -17799 0.2 CTCF RB1 ARID4B MAX ZNF2 RAD21 GATAD1 SCRT2 ZNF143 SMC3 TTC38 PKDREJ CDPF1 PPARA TRMU GTSE1-AS1
GH22G046298 0.4 Ensembl 0.7 -2.1 -2141 0.4 SCRT1 ZNF416 GTSE1-AS1 TRMU
GH22G046303 0.4 ENCODE 0.4 -7.2 -7176 0.9 FOS TTC38 GTSE1-AS1 TRMU
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GTSE1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for GTSE1-AS1 Gene

Chromosome:
22
Start:
46,295,143 bp from pter
End:
46,296,660 bp from pter
Size:
1,518 bases
Orientation:
Minus strand

Genomic View for GTSE1-AS1 Gene

Genes around GTSE1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTSE1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTSE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTSE1-AS1 Gene

Proteins for GTSE1-AS1 Gene

Post-translational modifications for GTSE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTSE1-AS1 Gene

Domains & Families for GTSE1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTSE1-AS1 Gene

Function for GTSE1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTSE1-AS1 Gene

Localization for GTSE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GTSE1-AS1 Gene

Pathways & Interactions for GTSE1-AS1 Gene

SuperPathways for GTSE1-AS1 Gene

No Data Available

Interacting Proteins for GTSE1-AS1 Gene

Gene Ontology (GO) - Biological Process for GTSE1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTSE1-AS1 Gene

Transcripts for GTSE1-AS1 Gene

mRNA/cDNA for GTSE1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTSE1-AS1 Gene

No ASD Table

Relevant External Links for GTSE1-AS1 Gene

GeneLoc Exon Structure for
GTSE1-AS1
ECgene alternative splicing isoforms for
GTSE1-AS1

Expression for GTSE1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTSE1-AS1 Gene

Orthologs for GTSE1-AS1 Gene

Evolution for GTSE1-AS1 Gene

ENSEMBL:
Gene Tree for GTSE1-AS1 (if available)
TreeFam:
Gene Tree for GTSE1-AS1 (if available)

No data available for Orthologs for GTSE1-AS1 Gene

Paralogs for GTSE1-AS1 Gene

No data available for Paralogs for GTSE1-AS1 Gene

Variants for GTSE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for GTSE1-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000277612 -- 46,294,877(+) TCCTC(C/T)AGGAA intron-variant, upstream-variant-2KB
rs1001336112 -- 46,296,525(+) TTTCA(C/T)TACTG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002330169 -- 46,296,646(+) CTGCT(A/G)TACAT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1003022811 -- 46,296,775(+) CACTG(C/G)ACGCT upstream-variant-2KB, utr-variant-5-prime
rs1003603010 -- 46,295,458(+) TTCAA(C/G)ATGAG nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for GTSE1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2469n106 OTHER inversion 24896259
esv2758844 CNV gain+loss 17122850
nsv1152661 OTHER inversion 26484159
nsv428393 CNV gain 18775914
nsv471214 CNV loss 18288195
nsv589136 CNV gain 21841781
nsv829281 CNV gain 20364138
nsv829293 CNV gain 20364138

Relevant External Links for GTSE1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTSE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTSE1-AS1 Gene

Disorders for GTSE1-AS1 Gene

Relevant External Links for GTSE1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GTSE1-AS1

No disorders were found for GTSE1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTSE1-AS1 Gene

Publications for GTSE1-AS1 Gene

  1. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy K.W. … Pang C.P. (Physiol. Genomics 2006) 3 64
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64

Products for GTSE1-AS1 Gene

Sources for GTSE1-AS1 Gene

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