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Aliases for GTSE1-AS1 Gene

Subcategory (RNA class) for GTSE1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for GTSE1-AS1 Gene

  • GTSE1 Antisense RNA 1 (Head To Head) 2 3
  • CN5H6.4 3

External Ids for GTSE1-AS1 Gene

ORGUL Members for GTSE1-AS1 Gene

Previous GeneCards Identifiers for GTSE1-AS1 Gene

  • GC22M046697
  • GC22M046700

Summaries for GTSE1-AS1 Gene

GeneCards Summary for GTSE1-AS1 Gene

GTSE1-AS1 (GTSE1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTSE1-AS1 Gene

Genomics for GTSE1-AS1 Gene

Genomic Location for GTSE1-AS1 Gene

Start:
46,295,143 bp from pter
End:
46,296,660 bp from pter
Size:
1,518 bases
Orientation:
Minus strand

Genomic View for GTSE1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GTSE1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTSE1-AS1 Gene

No data available for Regulatory Elements for GTSE1-AS1 Gene

Proteins for GTSE1-AS1 Gene

Post-translational modifications for GTSE1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTSE1-AS1 Gene

Domains for GTSE1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTSE1-AS1 Gene

Function for GTSE1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTSE1-AS1 Gene

Localization for GTSE1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GTSE1-AS1 Gene

Pathways for GTSE1-AS1 Gene

SuperPathways for GTSE1-AS1 Gene

No Data Available

Interacting Proteins for GTSE1-AS1 Gene

Gene Ontology (GO) - Biological Process for GTSE1-AS1 Gene

None

No data available for Pathways by source for GTSE1-AS1 Gene

Transcripts for GTSE1-AS1 Gene

mRNA/cDNA for GTSE1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GTSE1-AS1 Gene

No ASD Table

Relevant External Links for GTSE1-AS1 Gene

GeneLoc Exon Structure for
GTSE1-AS1
ECgene alternative splicing isoforms for
GTSE1-AS1

Expression for GTSE1-AS1 Gene

No Expression Related Data Available

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for GTSE1-AS1 Gene

Orthologs for GTSE1-AS1 Gene

Evolution for GTSE1-AS1 Gene

ENSEMBL:
Gene Tree for GTSE1-AS1 (if available)
TreeFam:
Gene Tree for GTSE1-AS1 (if available)

No data available for Orthologs for GTSE1-AS1 Gene

Paralogs for GTSE1-AS1 Gene

No data available for Paralogs for GTSE1-AS1 Gene

Variants for GTSE1-AS1 Gene

Sequence variations from dbSNP and Humsavar for GTSE1-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs135169 -- 46,294,702(-) ttttt(-/T)gagac downstream-variant-500B
rs9615942 -- 46,294,718(+) aaaaa(A/G)aaaga downstream-variant-500B
rs59711151 -- 46,294,717(+) AAAAA(-/AA)GAAAG downstream-variant-500B
rs78794754 -- 46,294,702(+) CGTCT(A/C)AAAAA downstream-variant-500B
rs79647953 -- 46,294,703(+) GTCTC(A/C)AAAAA downstream-variant-500B

Relevant External Links for GTSE1-AS1 Gene

HapMap Linkage Disequilibrium report
GTSE1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GTSE1-AS1 Gene

Disorders for GTSE1-AS1 Gene

No disorders were found for GTSE1-AS1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for GTSE1-AS1 Gene

Publications for GTSE1-AS1 Gene

  1. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy K.W. … Pang C.P. (Physiol. Genomics 2006) 3

Products for GTSE1-AS1 Gene

Sources for GTSE1-AS1 Gene

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