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Aliases for GTF2H2B Gene

Aliases for GTF2H2B Gene

  • General Transcription Factor IIH Subunit 2B (Pseudogene) 2 3 5
  • General Transcription Factor IIH, Polypeptide 2B (Pseudogene) 2
  • General Transcription Factor IIH, Polypeptide 2B 2

External Ids for GTF2H2B Gene

Previous GeneCards Identifiers for GTF2H2B Gene

  • GC05P069747
  • GC05P069711

Summaries for GTF2H2B Gene

GeneCards Summary for GTF2H2B Gene

GTF2H2B (General Transcription Factor IIH Subunit 2B (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2H2B Gene

Genomics for GTF2H2B Gene

Regulatory Elements for GTF2H2B Gene

Enhancers for GTF2H2B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G070400 1.1 Ensembl ENCODE 0.4 -13.2 -13243 3.8 ELF3 RB1 ZBTB40 GLIS2 ZSCAN5C ZNF350 CREM THAP11 SP3 ZNF398 LOC653406 LOC105379021 GTF2H2B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GTF2H2B on UCSC Golden Path with GeneCards custom track

Promoters for GTF2H2B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000182076 148 1401

Genomic Location for GTF2H2B Gene

Chromosome:
5
Start:
70,415,352 bp from pter
End:
70,450,362 bp from pter
Size:
35,011 bases
Orientation:
Plus strand

Genomic View for GTF2H2B Gene

Genes around GTF2H2B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GTF2H2B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GTF2H2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2H2B Gene

Proteins for GTF2H2B Gene

Post-translational modifications for GTF2H2B Gene

No Post-translational modifications

No data available for DME Specific Peptides for GTF2H2B Gene

Domains & Families for GTF2H2B Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GTF2H2B Gene

Function for GTF2H2B Gene

genes like me logo Genes that share phenotypes with GTF2H2B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GTF2H2B Gene

Localization for GTF2H2B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GTF2H2B Gene

Pathways & Interactions for GTF2H2B Gene

SuperPathways for GTF2H2B Gene

No Data Available

Interacting Proteins for GTF2H2B Gene

Gene Ontology (GO) - Biological Process for GTF2H2B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GTF2H2B Gene

Drugs & Compounds for GTF2H2B Gene

No Compound Related Data Available

Transcripts for GTF2H2B Gene

mRNA/cDNA for GTF2H2B Gene

(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2H2B Gene

No ASD Table

Relevant External Links for GTF2H2B Gene

GeneLoc Exon Structure for
GTF2H2B
ECgene alternative splicing isoforms for
GTF2H2B

Expression for GTF2H2B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GTF2H2B Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for GTF2H2B Gene



Protein tissue co-expression partners for GTF2H2B Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GTF2H2B Gene:

GTF2H2B
genes like me logo Genes that share expression patterns with GTF2H2B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GTF2H2B Gene

Orthologs for GTF2H2B Gene

Evolution for GTF2H2B Gene

ENSEMBL:
Gene Tree for GTF2H2B (if available)
TreeFam:
Gene Tree for GTF2H2B (if available)

No data available for Orthologs for GTF2H2B Gene

Paralogs for GTF2H2B Gene

No data available for Paralogs for GTF2H2B Gene

Variants for GTF2H2B Gene

Sequence variations from dbSNP and Humsavar for GTF2H2B Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001090693 -- 70,442,464(+) AGAAT(A/T)GTTTT intron-variant
rs1001481189 -- 70,444,916(+) TGACT(C/T)GAAAA intron-variant
rs1001911633 -- 70,446,970(+) TTAGA(A/C)TGAAA intron-variant
rs1002466275 -- 70,449,773(+) GATGC(C/G)TTTAA intron-variant, nc-transcript-variant
rs1003089644 -- 70,423,084(+) TTAAA(C/T)GTAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GTF2H2B Gene

Variant ID Type Subtype PubMed ID
dgv5695n100 CNV gain 25217958
dgv5696n100 CNV loss 25217958
dgv5697n100 CNV gain+loss 25217958
dgv9833n54 CNV loss 21841781
dgv9834n54 CNV gain 21841781
dgv9837n54 CNV loss 21841781
dgv9838n54 CNV loss 21841781
dgv9839n54 CNV loss 21841781
dgv9840n54 CNV loss 21841781
dgv9844n54 CNV loss 21841781
dgv9845n54 CNV loss 21841781
dgv9854n54 CNV loss 21841781
esv1009388 CNV gain 20482838
esv22113 CNV gain+loss 19812545
esv2669461 CNV deletion 23128226
esv2759348 CNV gain+loss 17122850
esv32787 CNV gain+loss 17666407
esv32846 CNV loss 17666407
esv3570183 CNV loss 25503493
esv3584530 CNV gain 24956385
esv3890643 CNV loss 25118596
esv3894207 CNV loss 25118596
esv3894210 CNV loss 25118596
esv999813 CNV gain 20482838
nsv1023116 CNV gain 25217958
nsv1034024 CNV gain 25217958
nsv10707 CNV gain+loss 18304495
nsv1073891 CNV deletion 25765185
nsv1074837 CNV deletion 25765185
nsv1074840 CNV deletion 25765185
nsv1133602 CNV deletion 24896259
nsv428117 CNV gain+loss 18775914
nsv433371 CNV gain 18776910
nsv471489 CNV gain 19718026
nsv471498 CNV gain 19718026
nsv508367 CNV deletion 20534489
nsv511106 OTHER inversion 20534489
nsv598430 CNV gain 21841781
nsv598439 CNV gain+loss 21841781
nsv598447 CNV loss 21841781
nsv598448 CNV loss 21841781
nsv598454 CNV loss 21841781
nsv598456 CNV loss 21841781
nsv598457 CNV loss 21841781
nsv598458 CNV loss 21841781
nsv598459 CNV loss 21841781
nsv598460 CNV gain 21841781
nsv598462 CNV gain 21841781
nsv598523 CNV loss 21841781
nsv598533 CNV loss 21841781
nsv598534 CNV gain 21841781
nsv598535 CNV loss 21841781
nsv598536 CNV gain 21841781
nsv598537 CNV loss 21841781
nsv598538 CNV loss 21841781
nsv598539 CNV loss 21841781
nsv598540 CNV loss 21841781
nsv7371 OTHER inversion 18451855
nsv821643 CNV loss 15273396
nsv950083 CNV deletion 24416366
nsv968189 CNV duplication 23825009
nsv980670 CNV duplication 23825009

Relevant External Links for GTF2H2B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GTF2H2B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GTF2H2B Gene

Disorders for GTF2H2B Gene

Relevant External Links for GTF2H2B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GTF2H2B

No disorders were found for GTF2H2B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GTF2H2B Gene

Publications for GTF2H2B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Lineage-specific gene duplication and loss in human and great ape evolution. (PMID: 15252450) Fortna A. … Sikela J.M. (PLoS Biol. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for GTF2H2B Gene

Sources for GTF2H2B Gene

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