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Aliases & Descriptions for GTF2B
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| OTTHUMP00000012347 2 | | OTTHUMP00000058838 2 | | S300-II 3 | | TF2B 2, 3, 5 | | TFIIB 1, 2, 3, 5 |
| | | Descriptions |
|---|
| General transcription factor TFIIB 3 | | RNA polymerase II transcription factor IIB 2 | | general transcription factor IIB 2 |
|
| | Search outside databases for aliases for GTF2B genePrevious GC identifers: GC01M089795 GC01M088488 GC01M088655 GC01M088785 |
Summaries for GTF2B(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GTF2B: This gene encodes the general transcription factor IIB, one of the ubiquitous factors required for transcription initiation by RNA polymerase II. The protein localizes to the nucleus where it forms a complex (the DAB complex) with transcription factors IID and IIA. Transcription factor IIB serves as a bridge between IID, the factor which initially recognizes the promoter sequence, and RNA polymerase II. [provided by RefSeq] UniProtKB/Swiss-Prot: TF2B_HUMAN, Q00403Function: General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase IIGene Wiki entry for GTF2B (Transcription_Factor_II_B) |
Genomic Location for GTF2B
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GTF2B gene 
Entrez Gene cytogenetic band: 1p22-p21 Ensembl cytogenetic band: 1p22.2 HGNC cytogenetic band: 1p22-p21GTF2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M089030:
(about GC identifiers)
Start:
|
89,090,909 bp from pter |
End:
|
89,129,889 bp from pter |
Size:
|
38,981 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_032977.8
| Proteins for GTF2B
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TF2B_HUMAN, Q00403 (See
protein sequence)Recommended Name: Transcription initiation factor IIB Size: 316 amino acids; 34833 Da
Cofactor: Binds 1 zinc ion per subunit
Subunit: Associates with TFIID-IIA (DA complex) to form TFIID-IIA-IIB (DAB-complex) which is then recognized by polymerase II. Interacts with the transcription elongation factor TCEA2. Interacts with HIV-1 Vpr. Interacts with GPBP1 (By similarity). Interacts with Epstein-Barr virus EBNA2
Subcellular location: Nucleus
PDB structures from and Proteopedia :1C9B (3D)
 1DL6 (3D)
 1RLY (3D)
 1RO4 (3D)
 1TFB (3D)
 1VOL (3D)
 2PHG (3D)
 
Secondary accessions: Q5JS30Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001505.1
ENSEMBL proteins: ENSP00000378179 ENSP00000359531
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GTF2B 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for GTF2B: Assays for GTF2B: | Protein
Domains/ Families for GTF2B(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q00403
ProtoNet protein and cluster: Q00403 3 Blocks protein families: IPB000812 Transcription factor TFIIB family IPB006670 Cyclin IPB013137 Zinc finger
UniProtKB/Swiss-Prot: TF2B_HUMAN, Q00403Similarity: Belongs to the TFIIB familySimilarity: Contains 1 TFIIB-type zinc finger | Gene Function for GTF2B
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001514
Applied Biosystems Silencer® siRNAs for GTF2B
Sigma-Aldrich siRNA for GTF2B  Sigma-Aldrich shRNA for GTF2B  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001514                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001514                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001514 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001514
UniProtKB/Swiss-Prot: TF2B_HUMAN, Q00403Function: General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase IIGenatlas biochemistry entry for GTF2B:general transcription factor IIB,35 kDa5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
): About this table | Pathways & Interactions for GTF2B
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Sigma-Aldrich "Your Favorite Gene" Pathways for GTF2B (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for GTF2B 
5/134 Interacting proteins for GTF2B (Q004031, 2 ENSP000003595313) via UniProtKB, MINT, and/or STRING (see all 134
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006355 | regulation of transcription, DNA-dependent |
IEA | -- | | GO:0006367 | transcription initiation from RNA polymerase II promoter |
EXP | 8946909 | | GO:0006368 | RNA elongation from RNA polymerase II promoter |
EXP | 9405375 | | GO:0006413 | translational initiation |
IEA | -- | | GO:0044419 | interspecies interaction between organisms |
IEA | -- | About this table
|
Drugs & Compounds for GTF2B(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for GTF2B 8 Novoseek chemical compound relationships for GTF2B gene
About this table
|
Transcripts for GTF2B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001514
Sigma-Aldrich siRNA for GTF2B  Sigma-Aldrich shRNA for GTF2B  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001514 REFSEQ mRNAs for GTF2B gene: NM_001514.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001514               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001514                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001514                                  untagged cDNA clones in CMV expression vector (see all 2): NM_001514  Additional cDNA sequence: AB451296.1 AK289822.1 BC020597.1 CR590496.1 CR592227.1 CR598774.1 CR600115.1 CR619060.1 M76766.1 S44184.1 8 DOTS entries: DT.217227 DT.92437115 DT.100651698 DT.95270437 DT.92437109 DT.92437111 DT.92437112 DT.100668090 24/246 AceView cDNA sequences (see all 246
):BI761841 AA031866 CR600115 NM_001514 AI803543 F02944 BX107185 BU182783 BC020597 AA195519 M76766 AI167866 CR619060 BP379342 CR590496 AA313473 H81749 BQ066911 BX488793 U47720 CB161485 AW303945 BM314476 BF438221
highest scoring ESTs for GTF2B:M76766 AA360607 AA376394 AL532376 BC020597 BC021000 BE730096 BE894746 BE973858 BF028541 Unigene Cluster for GTF2B: General transcription factor IIB Hs.481852 [show with all ESTs]Unigene Representative Sequence: NM_001514
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for GTF2B
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6a | · | 6b | · | 6c | ^ | 7 | ^ | 8 | ^ | 9 | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for GTF2B
2 Ensembl transcripts including schematic representations: ENST00000394687
ENST00000370500
|
Expression for GTF2B
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GTF2B expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GTF2B
1 / 2 / 3 5 probe-sets matching GTF2B gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTACGCATTC
SOURCE GeneReport for Unigene cluster: Hs.481852
Expression variation in blood from EXPOLDB for GTF2B |
Orthologs for GTF2B
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GTF2B gene from 5/23 species (see all 23
)
About this table Species with no ortholog for GTF2B
ENSEMBL Gene Tree for GTF2B | Paralogs for GTF2B(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for GTF2B(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GTF2B (up to first 250kb)
|
Disorders & Mutations for GTF2B
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 189963
6 Novoseek disease relationships for GTF2B gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| herpes simplex |
40.62 |
8 |
14764096 (1), 7791769 (1), 8972203 (1), 11371188 (1) (see all 7) |
| retinoblastoma |
36.97 |
3 |
9433129 (1), 8628726 (1), 8434021 (1) |
| carcinoma embryonal |
11.85 |
2 |
7878015 (1), 8887661 (1) |
| immunodeficiency |
4.50 |
3 |
7707528 (1), 8800208 (1), 9292011 (1) |
| tumors |
0.41 |
1 |
8628726 (1) |
| shock |
0.00 |
5 |
16330756 (2), 17994014 (1), 11005381 (1), 15149597 (1) |
About this table
|
Medical News for GTF2B(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GTF2B (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/318 PubMed articles for GTF2B gene (see all 318
):- Cloning of a human gene encoding the general transcription initiation factor IIB. (PubMed id 1876184)1, 2, 3, 4 Ha I.... Reinberg D. (1991)
- The HIV-1 Vpr co-activator induces a conformational change in TFIIB. (PubMed id 10359081)1, 3, 4 Agostini I.... Sire J. (1999)
- Sequence of general transcription factor TFIIB and relationships to other initiation factors. (PubMed id 1946368)1, 3, 4 Malik S.... Roeder R.G. (1991)
- Structure of a (Cys3His) zinc ribbon, a ubiquitous motif in archaeal and eucaryal transcription. (PubMed id 11045620)1, 3, 4 Chen H.T.... Scott R.A. (2000)
- Solution structure of the C-terminal core domain of human TFIIB: similarity to cyclin A and interaction with TATA-binding protein. (PubMed id 7671313)1, 3, 4 Bagby S.... Ikura M. (1995)
- The human immunodeficiency virus type 1 Vpr transactivator: cooperation with promoter-bound activator domains and binding to TFIIB. (PubMed id 8800208)1, 3, 4 Agostini I....Sire J. (1996)
- Crystal structure of a TFIIB-TBP-TATA-element ternary complex. (PubMed id 7675079)1, 3, 4 Nikolov D.B.... Burley S.K. (1995)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Isolation and characterization of a cDNA encoding a new type of human transcription elongation factor S-II. (PubMed id 8566795)3, 4 Umehara T....Horikoshi M. (1995)
|
Search for GTF2B
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GTF2B
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GTF2B
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GTF2B(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GTF2B(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GTF2B:

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Incremental update: 13 Oct 2009
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