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Aliases & Descriptions for GSPT1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases 551G9.2 2 ERF3A 3 ETF3A 1 , 2 FLJ38048 2 FLJ39067 2 GST1 1 , 2 eRF3a 1 , 2 , 3
Descriptions Eukaryotic peptide chain release factor subunit 3a 3 G1 to S phase transition 1 2 G1 to S phase transition protein 2 G1 to S phase transition protein 1 homolog 3
Search outside databases for aliases for GSPT1 genePrevious GC identifers: GC16M011749 GC16M012118 GC16M011932
Summaries for GSPT1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170 Function : Involved in translation termination in response to the termination codons UAA, UAG andUGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth
Gene Wiki entry for GSPT1
Genomic Location for GSPT1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GSPT1 gene Entrez Gene cytogenetic band: 16p13.1 Ensembl cytogenetic band: 16p13.13 HGNC cytogenetic band: 16p13.1 GSPT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M011874:
(about GC identifiers )
Start:
11,874,040 bp from pter
End:
11,917,313 bp from pter
Size:
43,274 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000016.8 NT_010393.15 Proteins for GSPT1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170 (See
protein sequence )Recommended Name: Eukaryotic peptide chain release factor GTP-binding subunit ERF3A Size : 499 amino acids; 55756 Da
Subunit : Component of the mRNA surveillance SURF complex, at least composed of ERF1, ERF3 (ERF3A orERF3B), EEF2, UPF1/RENT1, SMG1, SMG8 and SMG9
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001123478.1 NP_001123479.1 NP_002085.2 ENSEMBL proteins: ENSP00000219627 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for GSPT1: Assays for GSPT1:
Protein
Domains/ Families for GSPT1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P15170 ProtoNet protein and cluster: P15170
1 Blocks protein family : IPB004160 Elongation factor Tu UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170 Similarity : Belongs to the GTP-binding elongation factor family. ERF3 subfamily
Gene Function for GSPT1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001130006 Applied Biosystems Silencer ® siRNAs for GSPT1 Sigma-Aldrich siRNA and siRNA Panels for GSPT1 Sigma-Aldrich shRNA for GSPT1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001130006                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001130006                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001130006  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002094 UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170 Function : Involved in translation termination in response to the termination codons UAA, UAG andUGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth
Genatlas biochemistry entry for GSPT1 :peptide chain factor release 3,interacting with and stimulating ERF1,controlled stop-codon directedrelease,mapping at the FRA16A locus 5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GSPT1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for GSPT1 5/6 Interacting proteins for GSPT1 (P15170 2 ENSP00000219627 3 ) via UniProtKB, MINT, and/or STRING (see all 6
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for GSPT1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for GSPT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_001130006 Sigma-Aldrich siRNA and siRNA Panels for GSPT1 Sigma-Aldrich shRNA for GSPT1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001130006 NM_001130007 NM_002094
REFSEQ mRNAs for GSPT1 gene (3 alternative transcripts): NM_001130006.1 NM_001130007.1 NM_002094.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001130006 NM_001130007 NM_002094
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001130006                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001130006                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001130006  
Additional cDNA sequence: AK095367.1 AK095483.1 AK096386.1 AK290382.1 AK315267.1 BC008391.1 BC009503.2 BT006722.1 CR593395.1 CR594646.1 X17644.1
22 DOTS entries : DT.454604 DT.99988904 DT.446626 DT.97847629 DT.100683056 DT.95135414 DT.120689640 DT.120689662 DT.97847628 DT.120689743 DT.309978 DT.86845343 DT.101976268 DT.91758716 DT.95135409 DT.120689650 DT.120689654 DT.91695202 DT.91758717 DT.91851060 DT.95114873 DT.95135413
24/512 AceView cDNA sequences (see all 512
):AI991920 AA505929 BQ447004 BU182937 BE872397 AW304874 AA962601 BX477370 AA329788 AA847969 CB215506 D12056 AA706417 AA039996 AI040556 BI861124 AI301584 CR593395 BU070633 CB161307 AA995745 AA450256 AK096386 CB242406
highest scoring ESTs for GSPT1 :X17644 AA083295 AU100047 AU126336 AU128425 AU128450 AU128549 AU129233 AW245830 AW328500
Unigene Cluster for GSPT1: G1 to S phase transition 1 Hs.528780 [show with all ESTs ] Unigene Representative Sequence: NM_001130007 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for GSPT1 ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 SP1 :   -               -                     SP2 :   -               -                     SP3 :                                     SP4 :                                    
About this scheme ECgene alternative splicing isoforms for GSPT1 1 Ensembl transcript including schematic representation : ENST00000219627
Expression for GSPT1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GSPT1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GSPT1 1 / 2 / 3
15 probe-sets matching GSPT1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTAATAAAATSOURCE GeneReport for Unigene cluster: Hs.528780 Expression variation in blood from EXPOLDB for GSPT1
Orthologs for GSPT1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GSPT1 gene from 5/23 species (see all 23
)
About this table Species with no ortholog for GSPT1 ENSEMBL Gene Tree for GSPT1 Paralogs for GSPT1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GSPT1 gene GSPT2 2 HBS1L 2 TUFM 2 Pseudogenes 1 related pseudogene
SNPs/Variants for GSPT1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GSPT1 (up to first 250kb)
Disorders & Mutations for GSPT1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 139259 Human Gene Mutation Database : GSPT1
Medical News for GSPT1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GSPT1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/29 PubMed articles for GSPT1 gene (see all 29
): A human homologue of the yeast GST1 gene codes for a GTP-binding protein and is expressed in a proliferation-dependent manner in mammalian cells. (PubMed id 2511002) 2, 3, 4 Hoshino S.... Ui M. (1989) G1 to S phase transition protein 1 induces apoptosis signal-regulating kinase 1 activation by dissociating 14-3-3 from ASK1. (PubMed id 17700517) 2, 3 Lee J.A....Cho S. (2008) Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829) 3, 4 Loftus B.J....Adams M.D. (1999) Human eukaryotic release factor 3a depletion causes cell cycle arrest at G1 phase through inhibition of the mTOR pathway. (PubMed id 17562865) 1, 3 Chauvin C....Jean-Jean O. (2007) Involvement of human release factors eRF3a and eRF3b in translation termination and regulation of the termination complex formation. (PubMed id 15987998) 1, 3 Chauvin C....Jean-Jean O. (2005) The polypeptide chain-releasing factor GSPT1/eRF3 is proteolytically processed into an IAP-binding protein. (PubMed id 12865429) 1, 3 Hegde R....Alnemri E.S. (2003) Mapping of the human GSPT1 gene, a human homolog of the yeast GST1 gene, to chromosomal band 16p13.1. (PubMed id 1574740) 1, 3 Ozawa K....Hanaoka F. (1992) Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia. (PubMed id 19165527) 3 Martins-de-Souza D....Turck C.W. (2009) SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. (PubMed id 19417104) 4 Yamashita A....Ohno S. (2009) Proteasomal degradation of human release factor eRF3a regulates translation termination complex formation. (PubMed id 18083835) 3 Chauvin C. and Jean-Jean O. (2008)
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Genome Databases showing GSPT1
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Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GSPT1
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Specialized Databases showing GSPT1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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