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GSPT1 Gene

protein-coding   GIFtS: 66

GC16M011874
G1 to S phase transition 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
551G9.2 2
ERF3A 3
ETF3A 1, 2
FLJ38048 2
FLJ39067 2
GST1 1, 2
eRF3a 1, 2, 3
Descriptions
Eukaryotic peptide chain release factor subunit 3a 3
G1 to S phase transition 1 2
G1 to S phase transition protein 2
G1 to S phase transition protein 1 homolog 3
External Ids
HGNC: 46211
Entrez Gene: 29352
UniProtKB: P151703
Ensembl: ENSG000001033427
Search outside databases for aliases for GSPT1 gene

Previous GC identifers: GC16M011749 GC16M012118 GC16M011932

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170
Function: Involved in translation termination in response to the termination codons UAA, UAG and
UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth

Gene Wiki entry for GSPT1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the GSPT1 gene  

Entrez Gene cytogenetic band: 16p13.1   Ensembl cytogenetic band:  16p13.13   HGNC cytogenetic band: 16p13.1

GSPT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M011874:     (about GC identifiers)

Start:
11,874,040 bp from pter
End:
11,917,313 bp from pter
Size:
43,274 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000016.8  NT_010393.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170 (See protein sequence)
Recommended Name: Eukaryotic peptide chain release factor GTP-binding subunit ERF3A  
Size: 499 amino acids; 55756 Da
Subunit: Component of the mRNA surveillance SURF complex, at least composed of ERF1, ERF3 (ERF3A or
ERF3B), EEF2, UPF1/RENT1, SMG1, SMG8 and SMG9

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_001123478.1  NP_001123479.1  NP_002085.2  


    ENSEMBL proteins: 
    ENSP00000219627 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (eRF3/GSPT1 )
    Human Recombinant Proteins from Abnova (GSPT1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622 intracellular NAS15326224
    About this table

    Antibodies for GSPT1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for GSPT1
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (eRF3/GSPT1 ), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (GSPT1)
    Novus Biologicals Antibody for GSPT1

    Assays for GSPT1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR000795 ProtSyn_GTP_bd
     IPR004160 Transl_elong_EFTu/EF1A_C
     IPR004161 Transl_elong_EFTu/EF1A_2


       GeneDecks  GSPT1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P15170

    ProtoNet protein and cluster: P15170

    1 Blocks protein family: IPB004160 Elongation factor Tu

    UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170
    Similarity: Belongs to the GTP-binding elongation factor family. ERF3 subfamily

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (GSPT1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (GSPT1)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001130006

                  Applied Biosystems Silencer® siRNAs for GSPT1

                  Sigma-Aldrich siRNA and siRNA Panels for GSPT1  
                         Sigma-Aldrich shRNA for GSPT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for GSPT1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001130006
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001130006
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001130006 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002094

    UniProtKB/Swiss-Prot: ERF3A_HUMAN, P15170
    Function: Involved in translation termination in response to the termination codons UAA, UAG and
    UGA. Stimulates the activity of ERF1. Involved in regulation of mammalian cell growth

    Genatlas biochemistry entry for GSPT1:
    peptide chain factor release 3,interacting with and stimulating ERF1,controlled stop-codon directed
    release,mapping at the FRA16A locus

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0003747 translation release factor activity IMP15326224
    GO:0003924 GTPase activity TAS15326224
    GO:0005515 protein binding IPI9620853 9712840 12489690
    GO:0005525 GTP binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  GSPT1 


    5/6 Interacting proteins for GSPT1 (P151702 ENSP000002196273) via UniProtKB, MINT, and/or STRING (see all 6 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UPF1Q929002, ENSP000002628033MINT-6539771 MINT-6539822 MINT-6539753 STRING (score=.867)
    ETF1P624952, ENSP000003537413MINT-6539807 MINT-6539753 STRING (score=.998)
    PABPCP5P119402, ENSP000003130073MINT-6539792 STRING (score=.873)
    ATXN1P542532MINT-2859396
    PABPC1P119402MINT-6539792
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000082 G1/S transition of mitotic cell cycle TAS2511002
    GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS15326224
    GO:0006412 translation IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for GSPT1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (GSPT1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (GSPT1)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001130006

                  Sigma-Aldrich siRNA and siRNA Panels for GSPT1  
                         Sigma-Aldrich shRNA for GSPT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001130006  NM_001130007  NM_002094  

    REFSEQ mRNAs for GSPT1 gene (3 alternative transcripts): 

    NM_001130006.1   NM_001130007.1   NM_002094.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001130006  NM_001130007  NM_002094  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001130006
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001130006
                                     untagged cDNA clones in CMV expression vector (see all 4): NM_001130006 

    Additional cDNA sequence: 

    AK095367.1 AK095483.1 AK096386.1 AK290382.1 AK315267.1 BC008391.1 BC009503.2 BT006722.1 
    CR593395.1 CR594646.1 X17644.1 

    22 DOTS entries:

    DT.454604  DT.99988904  DT.446626  DT.97847629  DT.100683056  DT.95135414  DT.120689640  DT.120689662 
    DT.97847628  DT.120689743  DT.309978  DT.86845343  DT.101976268  DT.91758716  DT.95135409  DT.120689650 
    DT.120689654  DT.91695202  DT.91758717  DT.91851060  DT.95114873  DT.95135413 

    24/512 AceView cDNA sequences (see all 512 ):

    AI991920 AA505929 BQ447004 BU182937 BE872397 AW304874 AA962601 BX477370 
    AA329788 AA847969 CB215506 D12056 AA706417 AA039996 AI040556 BI861124 
    AI301584 CR593395 BU070633 CB161307 AA995745 AA450256 AK096386 CB242406 

    highest scoring ESTs for GSPT1:

    X17644 AA083295 AU100047 AU126336 AU128425 AU128450 AU128549 AU129233 AW245830 AW328500 

    Unigene Cluster for GSPT1:

    G1 to S phase transition 1
    Hs.528780  [show with all ESTs]
    Unigene Representative Sequence: NM_001130007


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for GSPT1

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
    SP1:        -                                         -                                                         
    SP2:        -                                         -                                                         
    SP3:                                                                                                            
    SP4:                                                                                                            

    About this scheme

    ECgene alternative splicing isoforms for GSPT1

    1 Ensembl transcript including schematic representation:
    ENST00000219627  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    GSPT1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for GSPT1

    1 / 2 / 3

    15 probe-sets matching GSPT1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    58486_at2, 3 U95-C 1 1.00 1.00 0.93 0.84 N31268 0.20 1.00 0.72 1

    64091_at2 U95-C 1 1.00 1.00 0.74 1.20 -- -- -- -- --

    81055_at2, 3 U95-E 1 1.00 1.00 0.35 1.14 AL079436 0.40 1.00 0.76 1
    33932_at2, 3 U95-A 2 1.00 0.94 0.59 0.91 X17644 1.00 0.87 0.94 1
    80058_at2, 3 U95-D 1 0.94 1.00 0.90 0.91 AA121686 0.20 1.00 0.72 1

    201912_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002094 0.60 1.00 0.82 1

    225276_at2, 3 U133-B 1 1.00 1.00 -- -- AA143579 0.20 1.00 0.72 1

    234975_at2, 3 U133-B 1 1.00 1.00 -- -- BE544748 0.20 1.00 0.72 1

    215438_x_at2, 3 U133-A 1 1.00 1.00 -- -- BE906054 0.20 1.00 0.72 1

    217595_at2, 3 U133-A 1 0.82 1.00 -- -- AV701723 0.20 1.00 0.72 1

    201912_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    225276_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    234975_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    215438_x_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    217595_at2 U133Plus2 1 0.82 1.00 -- -- -- -- -- -- --
    GeneDecks  GSPT1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TTAATAAAAT

    SOURCE GeneReport for Unigene cluster: Hs.528780

    Expression variation in blood from EXPOLDB for GSPT1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for GSPT1 gene from 5/23 species (see all 23 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    GSPT11   -- G1 to S phase transition 1 94.32(n)
    98.2(a)
    479846  XM_536971.2  XP_536971.1 
    chimpanzee
    (Pan troglodytes)
    GSPT11   -- G1 to S phase transition 1 99.75(n)
    100(a)
    739261  XM_001140542.1  XP_001140542.1 
    cow
    (Bos taurus)
    GSPT11   -- G1 to S phase transition 1 94.46(n)
    99.2(a)
    532337  XM_610849.3  XP_610849.3 
    rat
    (Rattus norvegicus)
    Gspt11   -- G1 to S phase transition 1 93.05(n)
    98.6(a)
    24420  NM_001003978.1  NP_001003978.1 
    mouse
    (Mus musculus)
    Gspt11, 5 16 (3.80 cM)5
    G1 to S phase transition 11, 5 93.39(n)1
    98.6(a)1
    148521  NM_146066.11  NP_666178.11 
     AA3865655  AB0035025  (see all 37)
    About this table        Species with no ortholog for GSPT1

    ENSEMBL Gene Tree for GSPT1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for GSPT1 gene
    GSPT22  HBS1L2  TUFM2  

    Pseudogenes
    1 related pseudogene


    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/318 NCBI SNPs in GSPT1 are shown (see all 318 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 70)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 16 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs403111,2
    A,C,F,H,O11870691(-) TGTTTG/CTTTCG 3 -- ut3116Minor allele frequency- C:0.32MN NA EU EA WA 1584
    rs4671061,2
    A,C,F,H11917867(-) GTGGAA/GAGAGA 2 -- ut51 ng31 trp35Minor allele frequency- G:0.04MN EU EA WA 602
    rs4640171,2
    C,F,H,O11917945(-) TAAAAT/GGAAAT 2 -- ng31 ut516Minor allele frequency- G:0.08MN EU EA WA 1524
    rs20515461,2
    C,F,H,O11873242(-) ATGAAC/TCACAG 3 -- ut319Minor allele frequency- T:0.32MN EU EA WA NA 810
    rs336591,2
    A,C,F,H11870862(-) TTGGCC/TTACCT 3 -- ut319Minor allele frequency- T:0.33MN EU EA WA 1022
    rs4347621,2
    A,C,F,H11917282(-) GCTGCT/CGCCGC 2 -- ut51 ese34Minor allele frequency- C:0.14EU EA WA 420
    rs20751511,2
    A,C,F11917635(-) CCCCCC/AACCAG 2 -- ut51 ng313Minor allele frequency- A:0.16EA MN 1846
    --
    rs116415201,2
    A,C11872891(+) ctgcaC/Gtccag 3 -- ut310--------
    rs20751501,2
    C,F11917771(-) TCTTCC/TCCATG 2 -- ng31 ut51 trp31Minor allele frequency- T:0.04EA 1108
    --
    rs3821581,2
    A,C11918619(-) TTGTTA/GGGTTT 1 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for GSPT1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 139259

    Human Gene Mutation Database: GSPT1

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/29 PubMed articles for GSPT1 gene (see all 29 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2935 HGNC: 4621 AceView: GSPT1 Ensembl:ENSG00000103342 euGenes: HUgn2935
    ECgene: GSPT1 H-InvDB: GSPT1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for GSPT1 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for GSPT1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for GSPT1 Antibodies for GSPT1
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     Antibodies for GSPT1

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