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Aliases for GSEC Gene

Subcategory (RNA class) for GSEC Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for GSEC Gene

  • G-Quadruplex Forming Sequence Containing LncRNA 2 3
  • ST3GAL4 Antisense RNA 1 (Head To Head) 2 3 5
  • ST3GAL4-AS1 3 5
  • DCPS-AS1 3

External Ids for GSEC Gene

Previous HGNC Symbols for GSEC Gene

  • ST3GAL4-AS1

Summaries for GSEC Gene

GeneCards Summary for GSEC Gene

GSEC (G-Quadruplex Forming Sequence Containing LncRNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GSEC Gene

Genomics for GSEC Gene

Regulatory Elements for GSEC Gene


Promoters for GSEC Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000046640 -313 1801 HDGF HDAC1 CBX3 SIN3A KLF17 DMAP1 GLIS2 PCBP1 KDM4B EGR2

Genomic Location for GSEC Gene

Chromosome:
11
Start:
126,340,889 bp from pter
End:
126,355,587 bp from pter
Size:
14,699 bases
Orientation:
Minus strand

Genomic View for GSEC Gene

Genes around GSEC on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GSEC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GSEC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GSEC Gene

Proteins for GSEC Gene

Post-translational modifications for GSEC Gene

No Post-translational modifications

No data available for DME Specific Peptides for GSEC Gene

Domains & Families for GSEC Gene

Gene Families for GSEC Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GSEC: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GSEC Gene

Function for GSEC Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GSEC Gene

Localization for GSEC Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GSEC Gene

Pathways & Interactions for GSEC Gene

No Data Available

Interacting Proteins for GSEC Gene

Gene Ontology (GO) - Biological Process for GSEC Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GSEC Gene

Drugs & Compounds for GSEC Gene

No Compound Related Data Available

Transcripts for GSEC Gene

mRNA/cDNA for GSEC Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GSEC Gene

No ASD Table

Relevant External Links for GSEC Gene

GeneLoc Exon Structure for
GSEC
ECgene alternative splicing isoforms for
GSEC

Expression for GSEC Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GSEC Gene

Orthologs for GSEC Gene

Evolution for GSEC Gene

ENSEMBL:
Gene Tree for GSEC (if available)
TreeFam:
Gene Tree for GSEC (if available)

No data available for Orthologs for GSEC Gene

Paralogs for GSEC Gene

No data available for Paralogs for GSEC Gene

Variants for GSEC Gene

Sequence variations from dbSNP and Humsavar for GSEC Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs137941190 Pathogenic 126,345,546(+) GCGCA(C/G/T)GCTCA intron-variant, reference, missense
rs1000014616 -- 126,347,525(+) AGCCC(C/G/T)TGCAA intron-variant
rs1000054815 -- 126,352,396(+) GGGGC(C/T)GCAGG intron-variant
rs1000126703 -- 126,351,965(+) GATTA(C/T)GGGCA intron-variant
rs1000434160 -- 126,343,504(+) CTTTC(A/C)CAGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GSEC Gene

Variant ID Type Subtype PubMed ID
nsv556530 CNV loss 21841781
nsv826123 CNV gain 20364138

Relevant External Links for GSEC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GSEC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GSEC Gene

Disorders for GSEC Gene

Relevant External Links for GSEC

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GSEC

No disorders were found for GSEC Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GSEC Gene

Publications for GSEC Gene

  1. The novel G-quadruplex-containing long non-coding RNA GSEC antagonizes DHX36 and modulates colon cancer cell migration. (PMID: 27797375) Matsumura K. … Akiyama T. (Oncogene 2017) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for GSEC Gene

Sources for GSEC Gene

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