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CXCL3 Gene

protein-coding   GIFtS: 56

GC04M075121
chemokine (C-X-C motif) ligand 3
(Previous name: GRO3 oncogene )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: GRO3)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CINC-2b 1, 2
GRO-gamma 3
GRO-gamma(1-73) 3
GRO3 2, 3, 5
GROG 3
GROg 1, 2
MIP-2b 1, 2
MIP2-beta 3
MIP2B 2, 5
SCYB3 1, 2, 3
Descriptions
GRO3 oncogene 1, 2
Growth-regulated protein gamma 3
MGSA gamma 2
Macrophage inflammatory protein 2-beta 3
chemokine (C-X-C motif) ligand 3 2
melanoma growth stimulatory activity gamma 2
External Ids
HGNC: 46041
Entrez Gene: 29212
UniProtKB: P198763
Ensembl: ENSG000001637347
Search outside databases for aliases for CXCL3 gene

Previous GC identifers: GC04M074891 GC04M075141 GC04M075302 GC04M075368 GC04M075267

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: CXCL3_HUMAN, P19876
Function: Ligand for CXCR2 (By similarity). Has chemotactic activity for neutrophils. May play a
role in inflammation and exert its effects on endothelial cells in an autocrine fashion. In vitro,
the processed form GRO-gamma(5-73) shows a fivefold higher chemotactic activity for neutrophilic
granulocytes

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CXCL3 gene  

Entrez Gene cytogenetic band: 4q21   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q21

CXCL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M075121:     (about GC identifiers)

Start:
75,121,170 bp from pter
End:
75,123,354 bp from pter
Size:
2,185 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000004.10  NT_006216.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: CXCL3_HUMAN, P19876 (See protein sequence)
Recommended Name: C-X-C motif chemokine 3 precursor  
Size: 107 amino acids; 11342 Da
Subcellular location: Secreted
Secondary accessions: Q4W5H9

Post-translational modifications:

  • N-terminal processed form GRO-gamma(5-73) is produced by proteolytic cleavage after secretion from
    peripheral blood monocytes1


  • REFSEQ proteins: NP_002081.2  

    ENSEMBL proteins: 
    ENSP00000296026 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    R&D Systems Recombinant & Natural Proteins for CXCL3 (CXCL3/GRO gamma/CINC-2/DCIP-1)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (GRO gamma)
    Human Recombinant Proteins from Abnova (CXCL3)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005615 extracellular space IDA10095777
    About this table

    Antibodies for CXCL3: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for CXCL3
    R&D Systems Antibodies for CXCL3 (CXCL3/GRO gamma/CINC-2/DCIP-1)
    Antibodies from Abcam (GRO gamma), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for CXCL3

    Assays for CXCL3: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR001811 Chemokine_IL8
     IPR002473 C-X-C/Interlkn_8
     IPR001089 CXC_chmkine_smll
     IPR018048 Small_chemokine_CXC_CS


       GeneDecks  CXCL3 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P19876

    ProtoNet protein and cluster: P19876

    1 Blocks protein family: IPB002473 Interleukin-8 signature

    UniProtKB/Swiss-Prot: CXCL3_HUMAN, P19876
    Similarity: Belongs to the intercrine alpha (chemokine CxC) family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CXCL3)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002090

                  Applied Biosystems Silencer® siRNAs for CXCL3

                  Sigma-Aldrich siRNA for CXCL3  
                         Sigma-Aldrich shRNA Panels and shRNA for CXCL3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for CXCL3
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002090
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002090
                                     untagged cDNA clone in CMV expression vector: NM_002090 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002090

    UniProtKB/Swiss-Prot: CXCL3_HUMAN, P19876
    Function: Ligand for CXCR2 (By similarity). Has chemotactic activity for neutrophils. May play a
    role in inflammation and exert its effects on endothelial cells in an autocrine fashion. In vitro,
    the processed form GRO-gamma(5-73) shows a fivefold higher chemotactic activity for neutrophilic
    granulocytes

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding ISS--
    GO:0008009 chemokine activity ISS--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    3 Sigma-Aldrich "Your Favorite Gene" Pathways for  CXCL3  (Your Favorite Gene powered by Ingenuity) 
     Hepatic Fibrosis / Hepatic Stellate Cell Activation
     Glucocorticoid Receptor Signaling
     Airway Pathology in Chronic Obstructive Pulmonary Disease

       GeneDecks  CXCL3 for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for CXCL3):
     hsa04060 Cytokine-cytokine receptor interaction

       GeneDecks  CXCL3 for the pathways selected above  
    About GeneDecksing

    5/29 Interacting proteins for CXCL3 (ENSP000002960263) via UniProtKB, MINT, and/or STRING (see all 29 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    IL8RBENSP000003196353STRING (score=.992)
    FGF18ENSP000002746253STRING (score=.928)
    IL8ENSP000003065123STRING (score=.91)
    CXCL5ENSP000002960273STRING (score=.907)
    CXCL6ENSP000002263173STRING (score=.907)
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006935 chemotaxis IEA--
    GO:0006954 inflammatory response IEA--
    GO:0006955 immune response IEA--
    GO:0030593 neutrophil chemotaxis ISS--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for CXCL3
    5 Novoseek chemical compound relationships for CXCL3 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    grogamma 98.43 17 8702798 (5), 15832427 (2), 9553055 (2), 10695618 (1) (see all 8)
    grobeta 96.16 15 8702798 (5), 15832427 (2), 9553055 (2), 10695618 (1) (see all 6)
    groalpha 92.20 9 8702798 (2), 10695618 (1), 9054580 (1), 9553055 (1) (see all 5)
    rantes 66.45 7 7682242 (2), 15832427 (1), 11001915 (1), 11808935 (1) (see all 6)
    calcium 1.83 4 10095777 (1), 8340371 (1), 8702798 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CXCL3)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002090

                  Sigma-Aldrich siRNA for CXCL3  
                         Sigma-Aldrich shRNA Panels and shRNA for CXCL3  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002090  

    REFSEQ mRNAs for CXCL3 gene: 

    NM_002090.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002090  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002090
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002090
                                     untagged cDNA clone in CMV expression vector: NM_002090 

    Additional cDNA sequence: 

    AK307064.1 AK311367.1 BC016308.1 BC065743.1 CR591181.1 M36821.1 X53800.1 

    3 DOTS entries:

    DT.105208  DT.40257611  DT.97783873 

    24/34 AceView cDNA sequences (see all 34 ):

    CD743042 BM128087 BU626899 BM128099 CD370075 CR591181 AI829424 X53800 
    BC065743 BI832837 BC016308 BV192573 BM828712 CB128389 BG570567 BX352546 
    T29169 CD520079 CA309305 BQ215959 CA748708 BX390861 CB129465 CA309555 

    highest scoring ESTs for CXCL3:

    M36821 BC016308 BC065743 BG506634 BM828712 BQ215959 BX384694 CA309305 CB128389 CB129465 

    Unigene Cluster for CXCL3:

    Chemokine (C-X-C motif) ligand 3
    Hs.89690  [show with all ESTs]
    Unigene Representative Sequence: AK311367


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000296026  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CXCL3 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CXCL3

    1 / 2 / 3

    3 probe-sets matching CXCL3 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    34022_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 M36821 1.00 1.00 1.00 1

    207850_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002090 0.60 1.00 0.82 1

    207850_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  CXCL3 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: ATAATAAAAG

    SOURCE GeneReport for Unigene cluster: Hs.89690

    Expression variation in blood from EXPOLDB for CXCL3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CXCL3 gene from 3 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    CXCL31   -- chemokine (C-X-C motif) ligand 3 97.51(n)
    96.26(a)
    461255  XM_517228.2  XP_517228.2 
    rat
    (Rattus norvegicus)
    Cxcl21   -- chemokine (C-X-C motif) ligand 2 71.04(n)
    58.59(a)
    114105  NM_053647.1  NP_446099.1 
    mouse
    (Mus musculus)
    Cxcl35
    Cxcl21
    55
    chemokine (C-X-C motif) ligand 35
    chemokine (C-X-C motif) ligand 21
    74.07(n)1
    64.65(a)1
    203101  NM_009140.21  NP_033166.11 
     AK1441585  AK1503145  (see all 12)
    About this table        Species with no ortholog for CXCL3

    ENSEMBL Gene Tree for CXCL3
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for CXCL3 gene
    PF42  PPBP2  CXCL12  PF4V12  CXCL62  CXCL52  CXCL22  IL82  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/22 NCBI SNPs in CXCL3 are shown (see all 22 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 21)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs3520431,2
    A,H75123185(-) GGCCCA/GCGCCA 1 H/R mis1 ese33Minor allele frequency- G:0.00EU EA 298
    --
    rs131502581,2
    A75121528(+) TATGGC/TCTCCC 1 -- ut31 ese30--------
    rs3706551,2
    A,C,F,H75121998(-) ATAGAA/GGGCAG 1 -- int15Minor allele frequency- G:0.48MN EU EA WA 604
    rs1812721,2
    C,F,H75122228(-) TCAACA/Gttatt 1 -- int19Minor allele frequency- G:0.10NS EU EA WA 526
    --
    rs558261311,2
    --75120734(+) TTTTT-/TAATAT 1 -- ng510--------
    --
    rs10517541,2
    --75121391(-) tttttA/Taaaaa 1 -- ut310--------
    --
    rs725012811,2
    --75123230(-) CTTCCG/TCTCCT 1 -- ut510--------
    --
    rs46946621,2
    --75121147(+) AAGAAG/TTTTTT 1 -- ng510--------
    --
    rs339525651,2
    --75120735(+) TTTTA-/TATATC 1 -- ng510--------
    --
    rs717883531,2
    --75121392(+) TTTTT-/AAAAAA 1 -- ut310--------
    About this table

    HapMap Linkage Disequilibrium images for CXCL3 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 139111

    6 Novoseek disease relationships for CXCL3 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    osteosarcoma 39.59 1 18606014 (1)
    necrosis 37.66 2 11001915 (1), 9277410 (1)
    colon carcinoma 33.65 2 15787094 (1)
    inflammation 25.37 1 9553055 (1)
    tumors 20.98 3 10095777 (1), 11001915 (1), 9277410 (1)
    melanoma 18.19 1 2201751 (1)
    About this table

    Human Genome Epidemiology Navigator: CXCL3 (2 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/44 PubMed articles for CXCL3 gene (see all 44 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2921 HGNC: 4604 AceView: CXCL3 Ensembl:ENSG00000163734 euGenes: HUgn2921
    ECgene: CXCL3 H-InvDB: CXCL3
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for CXCL3 Genetics and Cytogenetics in Oncology and Haematology
    Wikipedia http://en.wikipedia.org/wiki/CXCL3
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CXCL3:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for CXCL3 Antibodies for CXCL3
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for CXCL3 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Search OriGene for CXCL3
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     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Search Novus for antibodies for CXCL3

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