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CXCL2 Gene

protein-coding   GIFtS: 56

GC04M075202
chemokine (C-X-C motif) ligand 2
(Previous name: GRO2 oncogene )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: GRO2)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
CINC-2a 1, 2
GRO2 2, 3, 5
GROB 3
GROb 1, 2
Gro-beta 3
MGSA-b 1, 2
MIP-2a 1, 2
MIP2 2
MIP2-alpha 3
MIP2A 2, 3, 5
SCYB2 1, 2, 3
Descriptions
GRO2 oncogene 1, 2
Growth-regulated protein beta 3
MGSA beta 2
Macrophage inflammatory protein 2-alpha 3
chemokine (C-X-C motif) ligand 2 2
melanoma growth stimulatory activity beta 2
External Ids
HGNC: 46031
Entrez Gene: 29202
UniProtKB: P198753
Ensembl: ENSG000000810417
Search outside databases for aliases for CXCL2 gene

Previous GC identifers: GC04M074951 GC04M075363 GC04M075429 GC04M075329

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875
Function: Produced by activated monocytes and neutrophils and expressed at sites of inflammation.
Hematoregulatory chemokine, which, in vitro, suppresses hematopoietic progenitor cell
proliferation. GRO-beta(5-73) shows a highly enhanced hematopoietic activity

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CXCL2 gene  

Entrez Gene cytogenetic band: 4q21   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

CXCL2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M075202:     (about GC identifiers)

Start:
75,169,527 bp from pter
End:
75,183,874 bp from pter
Size:
14,348 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000004.10  NT_006216.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875 (See protein sequence)
Recommended Name: C-X-C motif chemokine 2 precursor  
Size: 107 amino acids; 11389 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :
1QNK (3D)    
Secondary accessions: Q9UPB8

Post-translational modifications:

  • The N-terminal processed form GRO-beta(5-73) is produced by proteolytic cleavage after secretion
    from bone marrow stromal cells1


  • REFSEQ proteins: NP_002080.1  

    ENSEMBL proteins: 
    ENSP00000264492 ENSP00000379110 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    R&D Systems Recombinant & Natural Proteins for CXCL2 (CXCL2/GRO beta/MIP-2/CINC-3)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (GRO beta)
    Human Recombinant Proteins from Abnova (CXCL2)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region IEA--
    GO:0005615 extracellular space TAS9873037
    GO:0005625 soluble fraction TAS2643119
    About this table

    Antibodies for CXCL2: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    R&D Systems Antibodies for CXCL2 (CXCL2/GRO beta/MIP-2/CINC-3)
    Antibodies from Abcam (GRO beta), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for CXCL2

    Assays for CXCL2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR001811 Chemokine_IL8
     IPR002473 C-X-C/Interlkn_8
     IPR001089 CXC_chmkine_smll
     IPR018048 Small_chemokine_CXC_CS


       GeneDecks  CXCL2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P19875

    ProtoNet protein and cluster: P19875

    1 Blocks protein family: IPB002473 Interleukin-8 signature

    UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875
    Similarity: Belongs to the intercrine alpha (chemokine CxC) family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CXCL2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002089

                  Applied Biosystems Silencer® siRNAs for CXCL2

                  Sigma-Aldrich siRNA for CXCL2  
                         Sigma-Aldrich shRNA for CXCL2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for CXCL2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002089
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002089
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_002089 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002089

    UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875
    Function: Produced by activated monocytes and neutrophils and expressed at sites of inflammation.
    Hematoregulatory chemokine, which, in vitro, suppresses hematopoietic progenitor cell
    proliferation. GRO-beta(5-73) shows a highly enhanced hematopoietic activity

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008009 chemokine activity TAS9873037
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Kegg Pathway  (Kegg details for CXCL2):
     hsa04060 Cytokine-cytokine receptor interaction

       GeneDecks  CXCL2 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  CXCL2 


    5/51 Interacting proteins for CXCL2 (ENSP000002644923 P198752) via UniProtKB, MINT, and/or STRING (see all 51 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DPP4P274872MINT-6491490
    IL8RBENSP000003196353STRING (score=.998)
    CCL3ENSP000002252453STRING (score=.961)
    TLR2ENSP000002600103STRING (score=.949)
    TLR4ENSP000003630893STRING (score=.945)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006935 chemotaxis TAS2643119
    GO:0006954 inflammatory response TAS2643119
    GO:0006955 immune response IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for CXCL2
    UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875
    Pharmaceutical: GRO-beta(5-73) is available under the name Garnocestim as immunomodulator. It is
    used prior to hematopoietic transplantation for peripheral blood stem cell mobilization and
    reduction of incidence, duration, and/or severity of chemotherapy induced cytopenias

    10/28 Novoseek chemical compound relationships for CXCL2 gene (see all 28 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    grogamma 90.78 14 8702798 (5), 15832427 (2), 9553055 (2), 10695618 (1) (see all 7)
    grobeta 90.74 32 8702798 (5), 16540656 (4), 15292528 (3), 15832427 (2) (see all 10)
    groalpha 78.02 9 8702798 (2), 16540656 (2), 10695618 (1), 12547709 (1) (see all 6)
    rantes 73.22 38 10505748 (3), 17015748 (3), 7682242 (2), 10531235 (2) (see all 26)
    ccl3 69.35 9 15585879 (2), 14734774 (1), 16552065 (1), 12905486 (1) (see all 7)
    tmtu 60.93 2 9726445 (1), 9707512 (1)
    endotoxin 40.97 4 11705739 (2), 14504103 (1), 10768990 (1)
    tarc 37.43 3 15941911 (2), 11001915 (1)
    8-oxo-dg 27.89 1 15337697 (1)
    ccl4 26.59 6 14734774 (1), 19120450 (1), 16552065 (1), 18340639 (1) (see all 5)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CXCL2)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002089

                  Sigma-Aldrich siRNA for CXCL2  
                         Sigma-Aldrich shRNA for CXCL2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002089  

    REFSEQ mRNAs for CXCL2 gene: 

    NM_002089.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002089  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002089
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002089
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_002089 

    Additional cDNA sequence: 

    AF043340.1 AK308504.1 AK311304.1 BC015753.1 CR542171.1 CR601860.1 CR602080.1 CR617096.1 
    M36820.1 M57731.1 X53799.1 

    10 DOTS entries:

    DT.40314945  DT.40313580  DT.101968867  DT.121273395  DT.100786999  DT.95299876  DT.100786997  DT.92445243 
    DT.95299860  DT.101987218 

    24/122 AceView cDNA sequences (see all 122 ):

    CA865685 CR602080 CD240332 BM820337 BM772327 BM749667 CR617096 C02042 
    BM763035 CD367441 CR601860 CA309975 BX397603 BM756509 CR542171 AA362186 
    BF847972 BM771156 AW103962 BM923815 X53799 AA487664 CA865443 BM768469 

    highest scoring ESTs for CXCL2:

    M36820 BC005276 BC015753 BC053653 BF126645 BG547218 BG569875 BG752013 BI223477 BI837665 

    Unigene Cluster for CXCL2:

    Chemokine (C-X-C motif) ligand 2
    Hs.75765  [show with all ESTs]
    Unigene Representative Sequence: CR601860


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations:
    ENST00000264492  ENST00000395761  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CXCL2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CXCL2

    1 / 2 / 3

    4 probe-sets matching CXCL2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    37187_at2, 3 U95-A 2 1.00 0.88 1.00 1.00 M36820 1.00 1.00 1.00 1

    209774_x_at2, 3 U133-A 2 1.00 0.86 -- -- M57731 0.80 1.00 0.91 1

    209774_x_at2 U133Plus2 2 1.00 0.86 -- -- -- -- -- -- --

    1569203_at*2 U133Plus2 NULL 0.00 0.00 -- -- -- -- -- -- --
    GeneDecks  CXCL2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.75765

    Expression variation in blood from EXPOLDB for CXCL2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CXCL2 gene from 4 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    chimpanzee
    (Pan troglodytes)
    CXCL21   -- chemokine (C-X-C motif) ligand 2 98.44(n)
    96.26(a)
    740176  XM_001155614.1  XP_001155614.1 
    cow
    (Bos taurus)
    CXCL21   -- chemokine (C-X-C motif) ligand 2 85.46(n)
    82.98(a)
    281214  NM_174299.2  NP_776724.1 
    rat
    (Rattus norvegicus)
    Cxcl11   -- chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating more 79.17(n)
    71.25(a)
    81503  NM_030845.1  NP_110472.1 
    mouse
    (Mus musculus)
    Cxcl25
    Cxcl11
    5 (51.00 cM)5
    chemokine (C-X-C motif) ligand 25
    chemokine (C-X-C motif) ligand 11
    77.04(n)1
    70(a)1
    148251  NM_008176.21  NP_032202.11 
     AK1376285  AK1504505  (see all 13)
    About this table        Species with no ortholog for CXCL2

    ENSEMBL Gene Tree for CXCL2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for CXCL2 gene
    CXCL32  CXCL52  PF42  PPBP2  CXCL12  IL82  PF4V12  CXCL62  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/21 NCBI SNPs in CXCL2 are shown (see all 21 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 16)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs91311,2
    A,C,F,H,O75181913(-) CCAGTA/GAGATC 1 -- ut31 ese319Minor allele frequency- N:0.00MN EA NA EU WA 1823
    rs38067921,2
    C,F,H75184138(+) CATCCC/TTACCG 1 -- ng315Minor allele frequency- )EATNIMREAEDNI(:0.01NA EU EA WA 454
    rs115744481,2
    H75184426(-) CCTGGC/ATCCAC 1 -- ng315Minor allele frequency- A:0.02NA EU EA WA 440
    --
    rs68326381,2
    H75183192(+) CAGCAT/ACTTTT 1 L/M mis1 ese34Minor allele frequency- A:0.00EU EA WA 406
    rs18375581,2
    C,H75182448(-) ATTCAG/AAAAAC 1 -- int15Minor allele frequency- A:0.00MN EU EA WA 588
    --
    rs722077361,2
    --75184374(+) TGTGT-/GTGTGTG 1 -- ng310--------
    --
    rs115744491,2
    --75183829(-) ACTCCG/CGGCTT 1 -- ut51 ese31Minor allele frequency- C:0.03NA 40
    --
    rs106708191,2
    --75182170(+) ACAaa-/CAAA  
            
    taaat
    1 -- ut310--------
    --
    rs360810481,2
    --75182168(+) AAACA-/AAAT  
            
    AATAA
    1 -- ut310--------
    --
    rs357056581,2
    --75182177(+) AATAA-/AATA  
            
    ATAAA
    1 -- ut310--------
    About this table

    HapMap Linkage Disequilibrium images for CXCL2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 139110

    10/33 Novoseek disease relationships for CXCL2 gene (see all 33 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    bronchoalveolar lavage fluid 63.01 13 16046875 (1), 10358192 (1), 16424224 (1), 16002559 (1) (see all 12)
    inflammation 62.62 20 11292716 (1), 11303726 (1), 10453028 (1), 18572367 (1) (see all 16)
    necrosis 57.79 51 2104219 (1), 14507887 (1), 18266468 (1), 14504103 (1) (see all 48)
    pneumonia 52.95 1 15320896 (1)
    sepsis 41.68 12 17944017 (3), 15614130 (2), 11373406 (1), 19184349 (1) (see all 7)
    tumors 35.82 66 16424980 (4), 17561115 (4), 7927176 (2), 2104219 (1) (see all 47)
    peritonitis 34.59 7 15614130 (2), 11231849 (2), 11755216 (2), 11303726 (1)
    infections e coli 24.72 1 10072556 (1)
    pulmonary infection 23.49 1 10768990 (1)
    colitis 21.66 1 18542050 (1)
    About this table

    Human Genome Epidemiology Navigator: CXCL2 (5 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/350 PubMed articles for CXCL2 gene (see all 350 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2920 HGNC: 4603 AceView: CXCL2 Ensembl:ENSG00000081041 euGenes: HUgn2920
    ECgene: CXCL2 H-InvDB: CXCL2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for CXCL2 Genetics and Cytogenetics in Oncology and Haematology
    Wikipedia http://en.wikipedia.org/wiki/CXCL2
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CXCL2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for CXCL2 Browse antibodies at Sigma-Aldrich
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for CXCL2 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Search Novus for antibodies for CXCL2

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