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Aliases & Descriptions for CXCL2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CINC-2a 1, 2 | | GRO2 2, 3, 5 | | GROB 3 | | GROb 1, 2 | | Gro-beta 3 | | MGSA-b 1, 2 | | MIP-2a 1, 2 | | MIP2 2 | | MIP2-alpha 3 | | MIP2A 2, 3, 5 | | SCYB2 1, 2, 3 |
| | | Descriptions |
|---|
| GRO2 oncogene 1, 2 | | Growth-regulated protein beta 3 | | MGSA beta 2 | | Macrophage inflammatory protein 2-alpha 3 | | chemokine (C-X-C motif) ligand 2 2 | | melanoma growth stimulatory activity beta 2 |
|
| | Search outside databases for aliases for CXCL2 genePrevious GC identifers: GC04M074951 GC04M075363 GC04M075429 GC04M075329 |
Summaries for CXCL2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875Function: Produced by activated monocytes and neutrophils and expressed at sites of inflammation. Hematoregulatory chemokine, which, in vitro, suppresses hematopoietic progenitor cell proliferation. GRO-beta(5-73) shows a highly enhanced hematopoietic activity |
Genomic Location for CXCL2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CXCL2 gene 
Entrez Gene cytogenetic band: 4q21 Ensembl cytogenetic band: 4q13.3 HGNC cytogenetic band: 4q13.3CXCL2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M075202:
(about GC identifiers)
Start:
|
75,169,527 bp from pter |
End:
|
75,183,874 bp from pter |
Size:
|
14,348 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_006216.14
| Proteins for CXCL2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875 (See
protein sequence)Recommended Name: C-X-C motif chemokine 2 precursor Size: 107 amino acids; 11389 Da
Subcellular location: Secreted
PDB structures from and Proteopedia :1QNK (3D)
 
Secondary accessions: Q9UPB8Post-translational modifications:
The N-terminal processed form GRO-beta(5-73) is produced by proteolytic cleavage after secretion from bone marrow stromal cells1
REFSEQ proteins: NP_002080.1
ENSEMBL proteins: ENSP00000264492 ENSP00000379110
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CXCL2: Assays for CXCL2: | Protein
Domains/ Families for CXCL2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P19875
ProtoNet protein and cluster: P19875 1 Blocks protein family: IPB002473 Interleukin-8 signature
UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875Similarity: Belongs to the intercrine alpha (chemokine CxC) family | Gene Function for CXCL2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002089
Applied Biosystems Silencer® siRNAs for CXCL2
Sigma-Aldrich siRNA for CXCL2  Sigma-Aldrich shRNA for CXCL2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002089                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002089                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002089 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002089
UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875Function: Produced by activated monocytes and neutrophils and expressed at sites of inflammation. Hematoregulatory chemokine, which, in vitro, suppresses hematopoietic progenitor cell proliferation. GRO-beta(5-73) shows a highly enhanced hematopoietic activity1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for CXCL2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for CXCL2 
5/51 Interacting proteins for CXCL2 (ENSP000002644923 P198752) via UniProtKB, MINT, and/or STRING (see all 51
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for CXCL2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CXCL2 UniProtKB/Swiss-Prot: CXCL2_HUMAN, P19875Pharmaceutical: GRO-beta(5-73) is available under the name Garnocestim as immunomodulator. It is used prior to hematopoietic transplantation for peripheral blood stem cell mobilization and reduction of incidence, duration, and/or severity of chemotherapy induced cytopenias 10/28 Novoseek chemical compound relationships for CXCL2 gene (see all 28
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| grogamma |
90.78 |
14 |
8702798 (5), 15832427 (2), 9553055 (2), 10695618 (1) (see all 7) |
| grobeta |
90.74 |
32 |
8702798 (5), 16540656 (4), 15292528 (3), 15832427 (2) (see all 10) |
| groalpha |
78.02 |
9 |
8702798 (2), 16540656 (2), 10695618 (1), 12547709 (1) (see all 6) |
| rantes |
73.22 |
38 |
10505748 (3), 17015748 (3), 7682242 (2), 10531235 (2) (see all 26) |
| ccl3 |
69.35 |
9 |
15585879 (2), 14734774 (1), 16552065 (1), 12905486 (1) (see all 7) |
| tmtu |
60.93 |
2 |
9726445 (1), 9707512 (1) |
| endotoxin |
40.97 |
4 |
11705739 (2), 14504103 (1), 10768990 (1) |
| tarc |
37.43 |
3 |
15941911 (2), 11001915 (1) |
| 8-oxo-dg |
27.89 |
1 |
15337697 (1) |
| ccl4 |
26.59 |
6 |
14734774 (1), 19120450 (1), 16552065 (1), 18340639 (1) (see all 5) |
About this table
|
Transcripts for CXCL2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002089
Sigma-Aldrich siRNA for CXCL2  Sigma-Aldrich shRNA for CXCL2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002089 REFSEQ mRNAs for CXCL2 gene: NM_002089.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002089               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002089                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002089                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002089  Additional cDNA sequence: AF043340.1 AK308504.1 AK311304.1 BC015753.1 CR542171.1 CR601860.1 CR602080.1 CR617096.1 M36820.1 M57731.1 X53799.1 10 DOTS entries: DT.40314945 DT.40313580 DT.101968867 DT.121273395 DT.100786999 DT.95299876 DT.100786997 DT.92445243 DT.95299860 DT.101987218 24/122 AceView cDNA sequences (see all 122
):CA865685 CR602080 CD240332 BM820337 BM772327 BM749667 CR617096 C02042 BM763035 CD367441 CR601860 CA309975 BX397603 BM756509 CR542171 AA362186 BF847972 BM771156 AW103962 BM923815 X53799 AA487664 CA865443 BM768469
highest scoring ESTs for CXCL2:M36820 BC005276 BC015753 BC053653 BF126645 BG547218 BG569875 BG752013 BI223477 BI837665 Unigene Cluster for CXCL2: Chemokine (C-X-C motif) ligand 2 Hs.75765 [show with all ESTs]Unigene Representative Sequence: CR601860
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000264492
ENST00000395761
|
Expression for CXCL2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CXCL2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CXCL2
1 / 2 / 3 4 probe-sets matching CXCL2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.75765
Expression variation in blood from EXPOLDB for CXCL2 |
Orthologs for CXCL2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CXCL2 gene from 4 species
About this table Species with no ortholog for CXCL2
ENSEMBL Gene Tree for CXCL2 | Paralogs for CXCL2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CXCL2 gene
- CXCL32 CXCL52 PF42 PPBP2 CXCL12 IL82 PF4V12 CXCL62
|
SNPs/Variants for CXCL2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CXCL2 (up to first 250kb)
|
Disorders & Mutations for CXCL2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 139110
10/33 Novoseek disease relationships for CXCL2 gene (see all 33
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bronchoalveolar lavage fluid |
63.01 |
13 |
16046875 (1), 10358192 (1), 16424224 (1), 16002559 (1) (see all 12) |
| inflammation |
62.62 |
20 |
11292716 (1), 11303726 (1), 10453028 (1), 18572367 (1) (see all 16) |
| necrosis |
57.79 |
51 |
2104219 (1), 14507887 (1), 18266468 (1), 14504103 (1) (see all 48) |
| pneumonia |
52.95 |
1 |
15320896 (1) |
| sepsis |
41.68 |
12 |
17944017 (3), 15614130 (2), 11373406 (1), 19184349 (1) (see all 7) |
| tumors |
35.82 |
66 |
16424980 (4), 17561115 (4), 7927176 (2), 2104219 (1) (see all 47) |
| peritonitis |
34.59 |
7 |
15614130 (2), 11231849 (2), 11755216 (2), 11303726 (1) |
| infections e coli |
24.72 |
1 |
10072556 (1) |
| pulmonary infection |
23.49 |
1 |
10768990 (1) |
| colitis |
21.66 |
1 |
18542050 (1) |
About this table
Human Genome Epidemiology Navigator: CXCL2 (5 documents)
|
Medical News for CXCL2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CXCL2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/350 PubMed articles for CXCL2 gene (see all 350
):- Identification of three related human GRO genes encoding cytokine functions. (PubMed id 2217207)1, 2, 3, 4 Haskill S.... Sager R. (1990)
- Identification of unique truncated KC/GRO beta chemokines with potent hematopoietic and anti-infective activities. (PubMed id 10725737)1, 3, 4 King A.G....Pelus L.M. (2000)
- Cloning and characterization of cDNAs for murine macrophage inflammatory protein 2 and its human homologues. (PubMed id 2201751)1, 3, 4 Tekamp-Olson P.... Cerami A. (1990)
- Cloning and sequencing of a new gro transcript from activated human monocytes: expression in leukocytes and wound tissue. (PubMed id 2078213)1, 3, 4 Iida N. and Grotendorst G.R. (1990)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Nuclear magnetic resonance solution structure of truncated human GRObeta [5-73] and its structural comparison with CXC chemokine family members GROalpha and IL-8. (PubMed id 10600366)3, 4 Qian Y.Q.... McDevitt P. (1999)
- Monocyte adherence results in selective induction of novel genes sharing homology with mediators of inflammation and tissue repair. (PubMed id 2341726)3, 4 Sporn S.A.... Haskill S. (1990)
- Functional and receptor binding characterization of recombinant murine macrophage inflammatory protein 2: sequence analysis and mutagenesis identify receptor binding epitopes. (PubMed id 9260277)1, 3 Jerva L.F....Lolis E. (1997)
- Expression of growth-regulated oncogene beta in an endometrial epithelial cell line, HHUA, and cultured human endometrial cells. (PubMed id 12892904)1, 3 Fukuda J....Miyakawa I. (2003)
- The CXC chemokines growth-regulated oncogene (GRO) alpha, GRObeta, GROgamma, neutrophil-activating peptide-2, and epithelial cell-derived neutrophil-activating peptide-78 are potent agonists for the type B, but not the type A, human interleukin-8 receptor. (PubMed id 8702798)1, 3 Ahuja S.K. and Murphy P.M. (1996)
|
Search for CXCL2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CXCL2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CXCL2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CXCL2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CXCL2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CXCL2:

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Incremental update: 13 Oct 2009
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