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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

GRIN2A Gene

protein-coding GIFtS: 72
GCID: GC16M009762

glutamate receptor, ionotropic, N-methyl D-aspartate 2A

(Previous symbol: NMDAR2A)

Explore 39 diseases affiliated with
GRIN2A via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Glutamate Receptor, Ionotropic, N-Methyl D-Aspartate 2A¹ ²		N-Methyl D-Aspartate Receptor Subtype 2A² ³
NMDAR2A¹ ² ³ ⁵		EPND²
GluN2A¹ ² ³		Glutamate Receptor Ionotropic, NMDA 2A²
Glutamate [NMDA] Receptor Subunit Epsilon-1² ³		N-Methyl-D-Aspartate Receptor Channel, Subunit Epsilon-1²
NR2A² ³		N-Methyl-D-Aspartate Receptor Subunit 2A²
HNR2A¹		NMDA Receptor Subtype 2A²

External Ids:	HGNC: 4585¹	Entrez Gene: 2903²	Ensembl: ENSG00000183454⁷	OMIM: 138253⁵	UniProtKB: Q12879³

Export aliases for GRIN2A gene to outside databases

Previous GC identifers: GC16M009658 GC16M009991 GC16M009822

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for GRIN2A:

N-methyl-D-aspartate (NMDA) receptors are a class of ionotropic glutamate-gated ion channels. These receptors have been

shown to be involved in long-term potentiation, an activity-dependent increase in the efficiency of synaptic

transmission thought to underlie certain kinds of memory and learning. NMDA receptor channels are heteromers composed

of the key receptor subunit NMDAR1 (GRIN1) and 1 or more of the 4 NMDAR2 subunits: NMDAR2A (GRIN2A), NMDAR2B (GRIN2B),

NMDAR2C (GRIN2C) and NMDAR2D (GRIN2D). Alternatively spliced transcript variants encoding different isoforms have been

found for this gene. (provided by RefSeq, Aug 2008)

UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879

Function: NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and

voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to both types of subunits

summary for GRIN2A:

NMDA receptors are members of the ionotropic class of glutamate receptors, which also includes Kainate and

AMPA receptors. NMDA receptors consist of NR1 subunits combined with one or more NR2 (A-D) or NR3 (A-B)

subunits. The ligand-gated channel is permeable to cations including Ca2+, and at resting membrane

potentials NMDA receptors are inactive due to a voltage-dependent blockade of the channel pore by Mg2+. NMDA

receptor activation, which requires binding of glutamate and glycine, leads to an influx of Ca2+ into the

postsynaptic region where it activates several signaling cascades, including pathways leading to the

induction of long-term potentiation (LTP) and depression (LTD). NMDA receptors have a critical role in

excitatory synaptic transmission and plasticity in the CNS. They govern a range of physiological conditions

including neurological disorders caused by excitotoxic neuronal injury, psychiatric disorders and

neuropathic pain syndromes.

Gene Wiki entry for GRIN2A

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000016.9 NC_018927.1 NT_010393.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the GRIN2A gene promoter:
CREB deltaCREB NRSF form 1 IRF-1 NRSF form 2
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: GRIN2A promoter sequence

Search SABiosciences Chromatin IP Primers for GRIN2A

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GRIN2A

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16p13.2 Ensembl cytogenetic band: 16p13.2 HGNC cytogenetic band: 16p13.2

GRIN2A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GRIN2A gene location

GeneLoc information about chromosome 16 GeneLoc Exon Structure

GeneLoc location for GC16M009762: view genomic region (about GC identifiers)

Start:	9,847,265 bp from pter	End:	10,276,611 bp from pter
Size:	429,347 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879 (See protein sequence)

Recommended Name: Glutamate receptor ionotropic, NMDA 2A precursor

Size: 1464 amino acids; 165283 Da

Subunit: Forms heteromeric channel of a zeta subunit (GRIN1), a epsilon subunit (GRIN2A, GRIN2B, GRIN2C or GRIN2D) and

a third subunit (GRIN3A or GRIN3B). Found in a complex with GRIN1 and GRIN3B. Found in a complex with GRIN1, GRIN3A

and PPP2CB. Interacts with PDZ domains of AIP1, INADL and DLG4. Interacts with HIP1 and NETO1 (By similarity).

Interacts with LRFN2 (By similarity)

Subcellular location: Cell membrane; Multi-pass membrane protein. Cell junction, synapse, postsynaptic cell membrane;

Multi-pass membrane protein

1 PDB 3D structure from and Proteopedia for GRIN2A:

3NFL (3D)

Secondary accessions: O00669 Q17RZ6

Alternative splicing: 2 isoforms: Q12879-1 Q12879-2

Explore the universe of human proteins at neXtProt for GRIN2A: NX_Q12879

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q12879

GRIN2A Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_000824.1 NP_001127879.1 NP_001127880.1

ENSEMBL proteins:

ENSP00000379818 ENSP00000454998 ENSP00000332549 ENSP00000379820 ENSP00000385872

ENSP00000441572

Reactome Protein details: Q12879
Human Recombinant Protein Products:

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	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for GRIN2A

Gene Ontology (GO): 5/16 cellular component terms (GO ID links to tree view) (see all 16): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005624	membrane fraction	--	--
GO:0005886	plasma membrane	TAS	--
GO:0005887	integral to plasma membrane	TAS	8768735
GO:0009986	cell surface	ISS	--
GO:0014069	postsynaptic density	IEA	--

GRIN2A for ontologies About GeneDecksing

GRIN2A Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of GRIN2A
	R&D Systems Antibodies for GRIN2A (NMDA R, NR2A Subunit)
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	Browse OriGene Antibodies OriGene Custom Antibody Services for GRIN2A
	GenScript Custom Superior Antibodies Services for GRIN2A
	Novus Biologicals GRIN2A Antibodies
	Abcam antibodies for GRIN2A
	Uscn Antibodies for GRIN2A
	ThermoFisher Antibodies for GRIN2A

Assay Products for GRIN2A:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
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	GenScript Custom Assay Services for GRIN2A
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for GRIN2A

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

GRIN2A for domains About GeneDecksing

5/6 InterPro domains/families (see all 6):

IPR018884 NMDAR2_C

IPR019594 Glu_rcpt_Glu/Gly-bd

IPR001638 SBP_bac_3

IPR001320 Iontro_glu_rcpt

IPR001828 ANF_lig-bd_rcpt

Graphical View of Domain Structure for InterPro Entry Q12879

ProtoNet protein and cluster: Q12879

2 Blocks protein families:

IPB001320 Ionotropic glutamate receptor

IPB001508 NMDA receptor signature

UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879

Similarity: Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. NR2A/GRIN2A subfamily

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879

Function: NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeability and

voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to both types of subunits

Genatlas biochemistry entry for GRIN2A:

N-methyl D-aspartate receptor 2,epsilon 1 subunit glutamate receptor,expressed in hippocampal pyramidal cells and basal

ganglia,involved in excitatory neurotransmission,in neuronal cell death and in the epileptic hyperexcitability of

dysplastic cortical regions,playing a central role in verbal memory and cognitive function

miRNA Products:		miRTarBase miRNAs that target GRIN2A: hsa-mir-125b (MIRT004578)

		OriGene 3'-UTR Clone (see all 3): GRIN2A Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat GRIN2A
		8/20 QIAGEN miScript miRNA Assays for microRNAs that regulate GRIN2A (see all 20):
		hsa-miR-579 hsa-miR-30c hsa-miR-125a-5p hsa-miR-137 hsa-miR-30d hsa-miR-519a hsa-miR-30a hsa-miR-125b

		SwitchGear 3'UTR luciferase reporter plasmid: GRIN2A 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for GRIN2A (see all 7) OriGene shRNA RFP: GRIN2A OriGene siRNA: GRIN2A
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat GRIN2A

Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for GRIN2A

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GRIN2A (see all 5) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GRIN2A (see all 3) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 3): GRIN2A (NM_000833)
		Browse Sino Biological Human cDNA Clones
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for GRIN2A
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GRIN2A

Cell Line Products:		GenScript Custom overexpressing Cell Line Services for GRIN2A
		Search LifeMap BioReagents cell lines for GRIN2A

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GRIN2A

Gene Ontology (GO): 5/14 molecular function terms (GO ID links to tree view) (see all 14): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004970	ionotropic glutamate receptor activity	--	--
GO:0004972	N-methyl-D-aspartate selective glutamate receptor activity	IEA	--
GO:0005234	extracellular-glutamate-gated ion channel activity	IEA	--
GO:0005261	cation channel activity	--	--
GO:0005262	calcium channel activity	IEA	--

GRIN2A for ontologies           About GeneDecksing

Animal Models:
     Mouse knock-outs for GRIN2A: Grin2a^tm1Nak Grin2a^tm1Rsp Grin2a^tm1Mim
     3 MGI mutant phenotypes (inferred from 5 alleles) (MGI details for Grin2a):

behavior/neurological

integument

nervous system

GRIN2A for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/26 super-pathways (see all 26) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

CREB phosphorylation through the activation of CaMKII

	CREB phosphorylation through the activation of CaMKII	1.00			Unblocking of NMDA receptor, glutamate binding and activation	0.68
	Ras activation uopn Ca2+ infux through NMDA receptor	0.78

Post NMDA receptor activation events

	Post NMDA receptor activation events	1.00			CREB phosphorylation through the activation of Ras	0.82
	Activation of NMDA receptor upon glutamate binding and postsynaptic events	0.89

Transmission across Chemical Synapses

	Transmission across Chemical Synapses	1.00			Neuronal System	0.67
	Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell	0.72

Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling

Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling

1.00

Neurophysiological process_Glutamate regulation of Dopamine D1A receptor signaling

0.98

Signal transduction Erk Interactions: Inhibition of Erk

Signal transduction Erk Interactions: Inhibition of Erk

1.00

Signal transduction_Erk Interactions- Inhibition of Erk

0.92

Pathway sources
See GeneCards unified pathways
Show all pathways

5 EMD Millipore Pathways for GRIN2A

	Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling
	Glutamic acid signaling
	Signal transduction Erk Interactions- Inhibition of Erk
	Neurophysiological process PGE2-induced pain processing
	Calcium channels

1 R&D Systems Pathway for GRIN2A

Synaptic Neurotransmission: Glutamatergic Excitation

5/7 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for GRIN2A (see all 7)

	Neuropathic Pain-Signaling in Dorsal Horn Neurons
	Pathogenesis of ALS
	Intracellular Calcium Signaling
	Huntington's Disease Pathway
	PEDF Induced Signaling

2 Cell Signaling Technology (CST) Pathways for GRIN2A

	Ca, cAMP and Lipid Signaling
	Neuroscience

3 GeneGo (Thomson Reuters) Pathways for GRIN2A

	Signal transduction Erk Interactions- Inhibition of Erk
	Neurophysiological process PGE2-induced pain processing
	Neurophysiological process Glutamate regulation of Dopamine D1A receptor signaling

3 BioSystems Pathways for GRIN2A

	Hypothetical Network for Drug Addiction
	Alzheimers Disease
	Reelin signaling pathway

5/9 Reactome Pathways for GRIN2A (see all 9)

	Ras activation uopn Ca2+ infux through NMDA receptor
	Unblocking of NMDA receptor, glutamate binding and activation
	CREB phosphorylation through the activation of CaMKII
	Transmission across Chemical Synapses
	CREB phosphorylation through the activation of Ras

5/7 Kegg Pathways (Kegg details for GRIN2A) (see all 7):

	Calcium signaling pathway
	Neuroactive ligand-receptor interaction
	Long-term potentiation
	Glutamatergic synapse
	Alzheimer's disease

GRIN2A for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for GRIN2A

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/75 Interacting proteins for GRIN2A (Q12879^{2, 3} ENSP00000332549⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 75)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
DLG4	P78352²^,³, ENSP00000293813⁴	MINT-1900076 MINT-1900851 MINT-1901389 I2D: score=11 STRING: ENSP00000293813
GRIN1	Q05586³, ENSP00000360616⁴	I2D: score=9 STRING: ENSP00000360616
IL16	Q14005³, ENSP00000302935⁴	I2D: score=7 STRING: ENSP00000302935
PTK2B	Q14289³, ENSP00000332816⁴	I2D: score=3 STRING: ENSP00000332816
DLG3	Q92796³, ENSP00000363480⁴	I2D: score=2 STRING: ENSP00000363480

About this table

Gene Ontology (GO): 5/57 biological process terms (GO ID links to tree view) (see all 57): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001508	regulation of action potential	--	--
GO:0001964	startle response	IEA	--
GO:0001975	response to amphetamine	IEA	--
GO:0006810	transport	TAS	8768735
GO:0006816	calcium ion transport	--	--

GRIN2A for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

GRIN2A for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Compounds for GRIN2A available from Tocris Bioscience About this table

Compound	Action	CAS #
(+)-MK 801 maleate	Non-competitive NMDA antagonist, acts at ion channel site	[77086-22-7]
NMDA	Selective NMDA agonist	[6384-92-5]
SDZ 220-581	Competitive NMDA antagonist	[174575-17-8]
PPPA	Competitive NR2A antagonist	--
(R)-CPP	Potent NMDA antagonist. More active enantiomer of (RS)-CPP (Cat. No. 0173)	[126453-07-4]

3 HMDB Compounds for GRIN2A About this table

Compound	Synonyms	CAS #	PubMed Ids
Calcium	Ca (see all 2)	7440-70-2	--
Loperamide	Apo-Loperamide (see all 10)	53179-11-6	--
Magnesium	Magnesium (see all 2)	7439-95-4	--

7 DrugBank Compounds for GRIN2A About this table

Compound	Synonyms	CAS #	Type	Actions	PubMed Ids
Glycine	2-Aminoacetic acid (see all 4)	56-40-6	target	antagonist	17513636 17403555 17646495 17405869 11752352 17360906
L-Glutamic Acid	(2S)-2-Aminopentanedioic acid (see all 15)	56-86-0	target	--	11080203 12068077 17139284 17016423 8886398
Memantine	Memantina [INN-Spanish] (see all 5)	19982-08-2	target	antagonist	8886398 15901795 16009352 14530799 9120573
Tenocyclidine	--	21500-98-1	target	antagonist	2538766 17157509
Felbamate	--	25451-15-4	target	antagonist	11752352
Halothane	2-Bromo-2-Chloro-1,1,1-Trifluoroethane (see all 14)	151-67-7	target	antagonist	8968191
Meperidine	--	57-42-1	target	antagonist	10735801

10/15 Novoseek chemical compound relationships for GRIN2A gene (see all 15) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
nmda	89.3	192	10322092 (4), 10987840 (3), 9349560 (3), 15590920 (3) (see all 99)
glutamate	73.5	27	16166158 (3), 15928921 (2), 14699423 (2), 10987840 (1) (see all 19)
alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid	57.8	1	17459877 (1)
kainate	54.4	3	10235640 (1), 12535174 (1), 18462708 (1)
gaba	25.2	4	18585682 (1), 12835949 (1)
tyrosine	24.8	19	18678878 (2), 11466426 (2), 12451687 (2), 15837820 (1) (see all 8)
calcium	23.9	7	8967993 (1), 19917116 (1), 15210575 (1), 8032174 (1) (see all 7)
guanylate	17.3	3	12859686 (1), 15590920 (1)
ethanol	15.8	9	11461975 (3), 14615013 (2), 19788495 (1), 8804725 (1)
serine	12.8	3	10064831 (2), 16266783 (1)

Search CenterWatch for drugs/clinical trials and news about GRIN2A / NMDE1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for GRIN2A gene (3 alternative transcripts):

NM_000833.3 NM_001134407.1 NM_001134408.1

Unigene Cluster for GRIN2A:

Glutamate receptor, ionotropic, N-methyl D-aspartate 2A

Hs.411472 [show with all ESTs]

Unigene Representative Sequence: NM_001134407

12 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000396573(uc002czr.4 uc002czo.4 uc010uym.2) ENST00000562109

ENST00000330684 ENST00000461292 ENST00000463531 ENST00000566683 ENST00000568247

ENST00000566670 ENST00000566665(uc010buk.3) ENST00000396575 ENST00000404927

ENST00000535259(uc010uyn.2)

miRNA Products:		OriGene 3'-UTR Clone (see all 3): GRIN2A Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat GRIN2A
		8/20 QIAGEN miScript miRNA Assays for microRNAs that regulate GRIN2A (see all 20):
		hsa-miR-579 hsa-miR-30c hsa-miR-125a-5p hsa-miR-137 hsa-miR-30d hsa-miR-519a hsa-miR-30a hsa-miR-125b

		SwitchGear 3'UTR luciferase reporter plasmid: GRIN2A 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for GRIN2A (see all 7) OriGene shRNA RFP: GRIN2A OriGene siRNA: GRIN2A
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat GRIN2A

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GRIN2A (see all 5) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GRIN2A (see all 3) OriGene custom cloning services � gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
		GenScript: all cDNA clones in your preferred vector (see all 3): GRIN2A (NM_000833)
		DNA2.0 Custom Codon Optimized Gene Synthesis Service for GRIN2A
		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GRIN2A

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		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GRIN2A
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GRIN2A

Additional cDNA sequence:

AB209695.1 AK295620.1 AK308862.1 BC117131.1 BC143273.1 CR749843.1 U09002.1 U90277.1

7 DOTS entries:

DT.212872 DT.313196 DT.120724194 DT.91752896 DT.95296161 DT.40125995 DT.99941816

24/70 AceView cDNA sequences (see all 70):

F08339 H09825 BM827634 BX108347 AI124875 AA351127 F09451 BX642521

AA662774 U90277 Z41346 CD674685 BX117526 Z42257 F12999 F11802

NM_000833 CR749843 AI921897 AL706855 Z38493 AW961861 R43097 AA875890

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

GRIN2A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGGAAGTGCT

About this image

GRIN2A expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

Primitive gut tube-like cells (A scalable, suspensi...)

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See GRIN2A Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for GRIN2A

SOURCE GeneReport for Unigene cluster: Hs.411472

SABiosciences Expression via Pathway-Focused PCR Arrays including GRIN2A:

Neurotransmitter Receptors in human mouse rat

GABA & Glutamate in human mouse rat

Huntington's Disease in human mouse rat

Synaptic Plasticity in human mouse rat

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for GRIN2A gene from 3/14 species (see all 14) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	GRIN2A¹	glutamate receptor, ionotropic, N-methyl D-aspartate more	75.57(n) 81.66(a)		427678 XM_425252.2 XP_425252.2
lizard (Anolis carolinensis)	Reptilia	GRIN2A⁶	--	85(a)	1 ↔ 1	GL343592.1(3409-48441)
zebrafish (Danio rerio)	Actinopterygii	LOC563297¹	similar to N-methyl-D-aspartate receptor channel subunit more	69.09(n) 69.06(a)		563297 XM_686662.2 XP_691754.2

ENSEMBL Gene Tree for GRIN2A (if available)
TreeFam Gene Tree for GRIN2A (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for GRIN2A gene

GRIA3² GRIN2D² GRIK1² GRIA2² GRIK2² GRIN1² GRIA1² GRIK3²

GRIK4² GRIN3A² GRIN2B² GRIK5² GRIN3B² GRIN2C² GRIA4² GRID1²

GRID2²

9 SIMAP similar genes for GRIN2A using alignment to 2 protein entries: NMDE1_HUMAN (see all proteins):

NR2A GRIN2C NMDAR2C GRIN2D GRIN2B GRIK2

GRID2 GRIK3 GRIK1

GRIN2A for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 16 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs74011018^1,2	C,	--	9846794(+)	`TCTGCC/GTGAAA`	2	--	ds500¹		2		WA	120
rs75520014^1,2	F,	--	9846971(+)	`AGGAGA/GGAGCT`	2	--	ds500¹		1		WA	118
rs115971675^1,2	F,	--	9846993(+)	`GGAGCC/GTCGCA`	2	--	ds500¹		1		WA	118
rs142132893^1,2		--	9847033(+)	`CACACC/TGGCTC`	2	--	ds500¹		0	--	--	--	--
rs56365229^1,2	C,	--	9847098(+)	`AGATGC/TGGGTA`	2	--	ds500¹		3		WA CSA	122
rs56022324^1,2	C,	--	9847119(+)	`ACAGCC/GTGCAG`	2	--	ds500¹		3		WA CSA	122
rs58340432^1,2	C,	--	9847314(+)	`GAAATT/CTTCCT`	2	--	ut3¹		2		WA	120
rs192504717^1,2		--	9847337(+)	`TTACAC/TCATAT`	2	--	ut3¹		0	--	--	--	--
rs114596802^1,2	F,	--	9847374(+)	`GTTATA/TTACAT`	2	--	ut3¹		1		WA	118
rs16966242^1,2	C,F,H,	--	9847489(+)	`CCTCTA/GTCATA`	2	--	ut3¹		10		NA NS EA WA CSA	672

HapMap Linkage Disequilibrium report for GRIN2A (9847265 - 10097265 bp, first 250kb of GRIN2A)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 6 variations for GRIN2A
3 CNVs: 3991 5328 30737
3 Indels: 102211 25767 33294
Human Gene Mutation Database (HGMD): GRIN2A

2 SABiosciences Cancer Mutation PCR Assays for GRIN2A:

Cosmic Id	AA Change
22050	p.S278F
108119	p.E371K

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing GRIN2A

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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GRIN2A for disorders About GeneDecksing

OMIM gene information: 138253 OMIM disorders: --

UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879

Defects in GRIN2A are the cause of epilepsy with neurodevelopmental defects (EPND) [MIM:613971]. EPND is a

neurodevelopmental defect characterized by mental retardation, with behavioral problems, associated with epilepsy,

learning difficuties and variable degree of cognitive impairment. Note=A chromosomal aberration involving GRIN2A has

been found in a family with epilepsy and neurodevelopmental defects. Translocation t(16;17)(p13.2;q11.2)

Note=GRIN2A somatic mutations have been frequently found in cutaneous malignant melanoma, suggesting that the

glutamate signaling pathway may play a role in the pathogenesis of melanoma (PubMed:21499247)

20/39 diseases for GRIN2A (see all 39): About MalaCards

paine syndrome attention deficit hyperactivity disorder spinal cord injury amyotrophic lateral sclerosis (als)

amyotrophic lateral sclerosis temporal lobe epilepsy transient cerebral ischemia autism spectrum disorder

lateral sclerosis toxic encephalopathy anorexia nervosa systemic lupus erythematosus

lupus erythematosus bipolar disorder alcohol dependence brain injury

huntington's disease neuronitis brain ischemia alcoholism

5 diseases from the University of Copenhagen DISEASES database for GRIN2A:

Toxic encephalopathy Schizophrenia Neurodegenerative disease Brain disease

Vascular disease

8 Novoseek disease relationships for GRIN2A gene About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
schizophrenia	45.3	27	17011703 (4), 19917116 (4), 18585682 (3), 12724619 (3) (see all 10)
bipolar disorder	29.9	4	18585682 (2), 15952869 (1), 12809987 (1)
attention-deficit hyperactivity disorder	27.7	1	14699423 (1)
huntington disease	26.6	5	17569088 (2), 15742215 (1)
alcoholism	13.8	4	18606955 (4)
dysplasia	0	1	16957582 (1)
mood disorders	0	1	12809987 (1)
epilepsy	0	1	17234586 (1)

Genetic Association Database (GAD): GRIN2A
Human Genome Epidemiology (HuGE) Navigator: GRIN2A (25 documents)

Export disorders for GRIN2A gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for GRIN2A gene, integrated from 9 sources (see all 316):
(articles sorted by number of sources associating them with GRIN2A)

Utopia: connect your pdf to the dynamic
world of online information

A microsatellite repeat in the promoter of the N-methyl-D-aspartate receptor 2A subunit (GRIN2A) gene suppresses transcriptional activity and correlates with chronic outcome in schizophrenia. (PubMed id 12724619)^{1, 4, 9} Itokawa M.... Yoshikawa T. (2003)
Extended analyses support the association of a functional (GT)n polymorphism in the GRIN2A promoter with Japanese schizophrenia. (PubMed id 15774266)^{1, 4, 9} Iwayama-Shigeno Y....Yoshikawa T. (2005)
Analysis of correlation between serum D-serine levels and functional promoter polymorphisms of GRIN2A and GRIN2B genes. (PubMed id 16266783)^{1, 4, 9} Iwayama Y....Yoshikawa T. (2006)
NR2A and NR2B receptor gene variations modify age at onset in Huntington disease. (PubMed id 15742215)^{1, 4, 9} Arning L....Epplen J.T. (2005)
Human N-methyl-D-aspartate receptor modulatory subunit hNR2A: cloning and sequencing of the cDNA and primary structure of the protein. (PubMed id 8061049)^{1, 2, 9} Foldes R.L.... Kamboj R.K. (1994)
Exome sequencing identifies GRIN2A as frequently muta ted in melanoma. (PubMed id 21499247)^{1, 2} Wei X....Samuels Y. (2011)
Mutations in GRIN2A and GRIN2B encoding regulatory su bunits of NMDA receptors cause variable neurodevelopmental phenotypes. (PubMed id 20890276)^{1, 2} Endele S....Kutsche K. (2010)
Further characterization of the molecular interaction between PSD-95 and NMDA receptors: the effect of the NR1 splice variant and evidence for modulation of channel gating. (PubMed id 12068077)^{1, 7} Rutter A.R....Stephenson F.A. (2002)
Determination of the genomic structure and mutation screening in schizophrenic individuals for five subunits of the N-methyl-D-aspartate glutamate receptor. (PubMed id 12082569)^{1, 4} Williams N.M....O'Donovan M.C. (2002)
Localization of the human NMDAR2D receptor subunit gene (GRIN2D) to 19q13.1-qter, the NMDAR2A subunit gene to 16p13.2 (GRIN2A), and the NMDAR2C subunit gene (GRIN2C) to 17q24-q25 using somatic cell hybrid and radiation hybrid mapping panels. (PubMed id 9480759)^{1, 3} Kalsi G....Gurling H. (1998)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 2903	HGNC: 4585	AceView: GRIN2A	Ensembl:ENSG00000183454	euGenes: HUgn2903
ECgene: GRIN2A	Kegg: 2903	H-InvDB: GRIN2A

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for GRIN2A	Pharmacogenomics, SNPs, Pathways

Intellectual Property for GRIN2A gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for GRIN2A gene:
Search GeneIP for patents involving GRIN2A

Licensable Technologies for GRIN2A gene:

Tufts University:

Treatment of Obsessive-Compulsive Disorder and Compulsive Disorders (including Over-Eating, Alcoholism & Smoking)

GeneCards and IP:
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glutamate receptor, ionotropic, N-methyl D-aspartate 2A

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GRIN2A Gene

glutamate receptor, ionotropic, N-methyl D-aspartate 2A

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