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Aliases & Descriptions for GRIN2A
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases NMDAR2A 2 , 3 , 5 NR2A 2 , 3 OTTHUMP00000160135 2 OTTHUMP00000174531 2 hNR2A 3
Descriptions N-methyl D-aspartate receptor subtype 2A 3 N-methyl-D-aspartate receptor channel, subunit epsilon-1 2 N-methyl-D-aspartate receptor subunit 2A 2 NMDA receptor subtype 2A 2 glutamate receptor, ionotropic, N-methyl D-aspartate 2A 2
Search outside databases for aliases for GRIN2A genePrevious GC identifers: GC16M009658 GC16M009991 GC16M009822
Summaries for GRIN2A (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GRIN2A : N-methyl-D-aspartate (NMDA) receptors are a class of ionotropic glutamate-gated ion channels. Thesereceptors have been shown to be involved in long-term potentiation, an activity-dependent increasein the efficiency of synaptic transmission thought to underlie certain kinds of memory andlearning. NMDA receptor channels are heteromers composed of the key receptor subunit NMDAR1(GRIN1) and 1 or more of the 4 NMDAR2 subunits: NMDAR2A (GRIN2A), NMDAR2B (GRIN2B), NMDAR2C(GRIN2C) and NMDAR2D (GRIN2D). Alternatively spliced transcript variants encoding differentisoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879 Function : NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeabilityand voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to bothtypes of subunits
Gene Wiki entry for GRIN2A
Genomic Location for GRIN2A
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GRIN2A gene Entrez Gene cytogenetic band: 16p13.2 Ensembl cytogenetic band: 16p13.2 HGNC cytogenetic band: 16p13.2 GRIN2A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M009762:
(about GC identifiers )
Start:
9,754,762 bp from pter
End:
10,184,112 bp from pter
Size:
429,351 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000016.8 NT_010393.15 Proteins for GRIN2A
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879 (See
protein sequence )Recommended Name: Glutamate [NMDA] receptor subunit epsilon-1 precursor Size : 1464 amino acids; 165283 Da
Subunit : Forms heteromeric channel of a zeta subunit (GRIN1), a epsilon subunit (GRIN2A, GRIN2B,GRIN2C or GRIN2D) and a third subunit (GRIN3A or GRIN3B). Found in a complex with GRIN1 andGRIN3B. Found in a complex with GRIN1, GRIN3A and PPP2CB. Interacts with PDZ domains of AIP1,INADL and DLG4. Interacts with HIP1 (By similarity)
Subcellular location : Cell membrane; Multi-pass membrane protein. Cell junction, synapse,postsynaptic cell membrane; Multi-pass membrane protein
Secondary accessions : O00669
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_000824.1 NP_001127879.1 NP_001127880.1 ENSEMBL proteins: ENSP00000385872 ENSP00000379818 ENSP00000332549 ENSP00000379820 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/11 Gene Ontology (GO) cellular component terms (links to tree view) (see all 11
):
About this table Antibodies for GRIN2A: Assays for GRIN2A:
Protein
Domains/ Families for GRIN2A(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q12879 ProtoNet protein and cluster: Q12879
2 Blocks protein families : IPB001320 Ionotropic glutamate receptor IPB001508 NMDA receptor signature UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879 Similarity : Belongs to the glutamate-gated ion channel (TC 1.A.10) family
Gene Function for GRIN2A
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (GRIN2A ) Millipore RNAi Products for the Analysis of GRIN2A Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (GRIN2A )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000833 Applied Biosystems Silencer ® siRNAs for GRIN2A Sigma-Aldrich siRNA and siRNA Panels for GRIN2A Sigma-Aldrich shRNA for GRIN2A Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000833                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000833                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000833  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000833 UniProtKB/Swiss-Prot: NMDE1_HUMAN, Q12879 Function : NMDA receptor subtype of glutamate-gated ion channels possesses high calcium permeabilityand voltage-dependent sensitivity to magnesium. Activation requires binding of agonist to bothtypes of subunits
Genatlas biochemistry entry for GRIN2A :N-methyl D-aspartate receptor 2,epsilon 1 subunit glutamate receptor,expressed in hippocampalpyramidal cells and basal ganglia,involved in excitatory neurotransmission,in neuronal cell deathand in the epileptic hyperexcitability of dysplastic cortical regions,playing a central role inverbal memory and cognitive function
2 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Grin2a) :5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
):
GO ID Qualified GO term Evidence PubMed IDs GO:0000287 magnesium ion binding
IEA -- GO:0004872 receptor activity
IEA -- GO:0004972 N-methyl-D-aspartate selective glutamate receptor activity
TAS 8768735 GO:0005234 extracellular-glutamate-gated ion channel activity
IEA -- GO:0005262 calcium channel activity
IEA --
About this table
Pathways & Interactions for GRIN2A
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for GRIN2A (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for GRIN2A 5/71 Interacting proteins for GRIN2A (ENSP00000332549 3 Q12879 2 ) via UniProtKB, MINT, and/or STRING (see all 71
)About this table 5/21 Gene Ontology (GO) biological process terms (links to tree view) (see all 21
):
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Drugs & Compounds for GRIN2A (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GRIN2A
Compounds for GRIN2A available from Tocris Bioscience Compound Action
CAS
number (+)-MK 801 maleate Non-competitive NMDA antagonist, acts at ion channel site [77086-22-7] NMDA Selective NMDA agonist [6384-92-5] SDZ 220-581 Competitive NMDA antagonist [174575-17-8] PPPA Competitive NR2A antagonist (R)-CPP More active enantiomer of (RS)-CPP (Cat. No. 0173) [126453-07-4]
About this table 8 Novoseek chemical compound relationships for GRIN2A gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
25.31
17
18678878 (2), 11466426 (2), 12451687 (2), 15837820 (1) (see all 7 )
calcium
23.23
6
8967993 (1), 15210575 (1), 8032174 (1), 11677266 (1) (see all 6 )
guanylate
19.78
3
12859686 (1), 15590920 (1)
ethanol
14.59
8
11461975 (3), 14615013 (2), 8804725 (1)
methionine
5.87
2
9849671 (1)
lead
0.00
1
15973774 (1)
nadph
0.00
1
14720220 (1)
zinc
0.00
12
14615013 (3), 16166158 (3), 10402203 (2), 11528420 (1)
About this table
Transcripts for GRIN2A(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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Inhib. RNA: Invitrogen RNAi Products for gene knock-down (GRIN2A ) Millipore RNAi Products for the Analysis of GRIN2A Gene knock-down Abnova Chimera RNAi Products for Gene knock-down (GRIN2A )
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_000833 Sigma-Aldrich siRNA and siRNA Panels for GRIN2A Sigma-Aldrich shRNA for GRIN2A Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000833 NM_001134407 NM_001134408
REFSEQ mRNAs for GRIN2A gene (3 alternative transcripts): NM_000833.3 NM_001134407.1 NM_001134408.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000833 NM_001134407 NM_001134408
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_000833                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_000833                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_000833  
Additional cDNA sequence: AB209695.1 AK295620.1 AK308862.1 BC117131.1 BC143273.1 CR749843.1 U09002.1 U90277.1
6 DOTS entries : DT.212872 DT.313196 DT.91752896 DT.120724194 DT.40125995 DT.95296161
24/70 AceView cDNA sequences (see all 70
):BM827634 H09825 CD674685 AA662774 BX117526 U90277 F08339 AA351127 Z41346 BX642521 AI124875 F09451 BX108347 F12999 F10594 Z38493 N48896 AL706699 AA782003 AL706855 AL709862 AK124698 AW961861 R43097
highest scoring ESTs for GRIN2A :U09002 U90277 AA774828 AB209695 AL706855 BF946376 BF946382 BG150751 BM827634 BX642521
Unigene Cluster for GRIN2A: Glutamate receptor, ionotropic, N-methyl D-aspartate 2A Hs.411472 [show with all ESTs ] Unigene Representative Sequence: NM_001134407 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000404927
ENST00000396573
ENST00000330684
ENST00000396575
Expression for GRIN2A
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GRIN2A expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GRIN2A 1 / 2 / 3
9 probe-sets matching GRIN2A gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGGAAGTGCTSOURCE GeneReport for Unigene cluster: Hs.411472 Expression variation in blood from EXPOLDB for GRIN2A
Orthologs for GRIN2A
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GRIN2A gene from 5/7 species (see all 7
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
GRIN2A1
--
glutamate receptor, ionotropic, N-methyl D-aspartate more
90.03(n) 94.81(a)
490012 XM_547132.2 XP_547132.2
chimpanzee (Pan troglodytes)
GRIN2A1
--
glutamate receptor, ionotropic, N-methyl D-aspartate more
99.5(n) 99.52(a)
454396 NM_001034189.1 NP_001029361.1
rat (Rattus norvegicus)
Grin2a1
--
glutamate receptor, ionotropic, N-methyl D-aspartate more
89.16(n) 95.22(a)
24409 NM_012573.2 NP_036705.2
mouse (Mus musculus)
Grin2a1 , 5
16 (3.40 cM) 5
glutamate receptor, ionotropic, NMDA2A (epsilon 1)1, 5
88.84(n) 1 95.29(a) 1
14811 1 NM_008170.2 1 NP_032196.2 1 BC146289 5 BC148800 5 (see all 6 )
chicken (Gallus gallus)
GRIN2A1
--
glutamate receptor, ionotropic, N-methyl D-aspartate more
75.57(n) 81.66(a)
427678 XM_425252.2 XP_425252.2
About this table Species with no ortholog for GRIN2A ENSEMBL Gene Tree for GRIN2A Paralogs for GRIN2A (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GRIN2A gene GRIN2C 2 GRIN2D 2 GRIN2B 2
SNPs/Variants for GRIN2A (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GRIN2A (up to first 250kb)
Disorders & Mutations for GRIN2A
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 138253 8 Novoseek disease relationships for GRIN2A gene
About this table Human Gene Mutation Database : GRIN2A Genetic Association Database: GRIN2A Human Genome Epidemiology Navigator: GRIN2A (14 documents)
Medical News for GRIN2A (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GRIN2A (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/235 PubMed articles for GRIN2A gene (see all 235
): A microsatellite repeat in the promoter of the N-methyl-D-aspartate receptor 2A subunit (GRIN2A) gene suppresses transcriptional activity and correlates with chronic outcome in schizophrenia. (PubMed id 12724619) 1, 3, 6 Itokawa M.... Yoshikawa T. (2003) Extended analyses support the association of a functional (GT)n polymorphism in the GRIN2A promoter with Japanese schizophrenia. (PubMed id 15774266) 1, 3, 6 Iwayama-Shigeno Y....Yoshikawa T. (2005) Analysis of correlation between serum D-serine levels and functional promoter polymorphisms of GRIN2A and GRIN2B genes. (PubMed id 16266783) 1, 3, 6 Iwayama Y....Yoshikawa T. (2006) NR2A and NR2B receptor gene variations modify age at onset in Huntington disease. (PubMed id 15742215) 1, 3, 6 Arning L....Epplen J.T. (2005) Human N-methyl-D-aspartate receptor modulatory subunit hNR2A: cloning and sequencing of the cDNA and primary structure of the protein. (PubMed id 8061049) 1, 3, 4 Foldes R.L.... Kamboj R.K. (1994) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) Determination of the genomic structure and mutation screening in schizophrenic individuals for five subunits of the N-methyl-D-aspartate glutamate receptor. (PubMed id 12082569) 3, 6 Williams N.M....O'Donovan M.C. (2002) Localization of the human NMDAR2D receptor subunit gene (GRIN2D) to 19q13.1-qter, the NMDAR2A subunit gene to 16p13.2 (GRIN2A), and the NMDAR2C subunit gene (GRIN2C) to 17q24-q25 using somatic cell hybrid and radiation hybrid mapping panels. (PubMed id 9480759) 2, 3 Kalsi G....Gurling H. (1998) Cloning and functional characterization of human heteromeric N- methyl-D-aspartate receptors. (PubMed id 8768735) 3, 4 Hess S.D.... Velicelebi G. (1996) The N-methyl-D-aspartate receptor type 2A is frequently methylated in human colorectal carcinoma and suppresses cell growth. (PubMed id 17922030) 1, 3 Kim M.S....Sidransky D. (2008)
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Genome Databases showing GRIN2A
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GRIN2A
(According to HUGE )
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Specialized Databases showing GRIN2A (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for GRIN2A gene: Services for GRIN2A (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GRIN2A:
Antibodies & Assays for GRIN2A   (NMDAR2A)
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009