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Aliases & Descriptions for GRIA3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases GLUR-C 2 GLUR-K3 2 GLUR3 2 , 3 , 5 GLURC 1 , 2 , 3 GluR-3 3 GluR-C 3 GluR-K3 3 MRX94 2 , 5 OTTHUMP00000024261 2 OTTHUMP00000024262 2 dJ1171F9.1 2
Descriptions AMPA-selective glutamate receptor 3 3 Glutamate receptor ionotropic, AMPA 3 3 glutamate receptor C 2 glutamate receptor subunit 3 2 glutamate receptor, ionotrophic, AMPA 3 2
Search outside databases for aliases for GRIA3 genePrevious GC identifers: GC0XP117035 GC0XP119211 GC0XP120270 GC0XP121015 GC0XP122044
Summaries for GRIA3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GRIA3 : Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalianbrain and are activated in a variety of normal neurophysiologic processes. These receptors areheteromeric protein complexes composed of multiple subunits, arranged to form ligand-gated ionchannels. The classification of glutamate receptors is based on their activation by differentpharmacologic agonists. The subunit encoded by this gene belongs to a family of AMPA(alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate)-sensitive glutamate receptors, and issubject to RNA editing (AGA->GGA; R->G). Alternative splicing at this locus results indifferent isoforms, which may vary in their signal transduction properties. [provided by RefSeq] UniProtKB/Swiss-Prot: GRIA3_HUMAN, P42263 Function : Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at manysynapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamateinduces a conformation change, leading to the opening of the cation channel, and thereby convertsthe chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters atransient inactive state, characterized by the presence of bound agonist
Gene Wiki entry for GRIA3
Genomic Location for GRIA3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GRIA3 gene Entrez Gene cytogenetic band: Xq25-q26 Ensembl cytogenetic band: Xq25 HGNC cytogenetic band: Xq25 GRIA3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome X GeneLoc Exon Structure
GeneLoc location for GC0XP122145:
(about GC identifiers )
Start:
122,145,687 bp from pter
End:
122,452,447 bp from pter
Size:
306,761 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000023.9 NT_011786.15 Proteins for GRIA3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GRIA3_HUMAN, P42263 (See
protein sequence )Recommended Name: Glutamate receptor 3 precursor Size : 894 amino acids; 101157 Da
Subunit : Homotetramer or heterotetramer of pore-forming glutamate receptor subunits. Tetramers maybe formed by the dimerization of dimers. Interacts with PRKCABP, GRIP1 and GRIP2 (By similarity)
Subcellular location : Cell membrane; Multi-pass membrane protein. Cell junction, synapse,postsynaptic cell membrane; Multi-pass membrane protein
Miscellaneous : The postsynaptic actions of Glu are mediated by a variety of receptors that arenamed according to their selective agonists. This receptor binds AMPA (quisqualate) > glutamate >kainate
Caution : It is uncertain whether Met-1 or Met-7 is the initiator
Secondary accessions : Q4VXD5 Q4VXD6 Q9HDA0 Q9HDA1 Q9HDA2Alternative splicing : 2 isoforms : P42263-1 P42263-2
Post-translational modifications:
Palmitoylated. Depalmitoylated upon glutamate stimulation. Cys-621 palmitoylation leads to Golgiretention and decreased cell surface expression. In contrast, Cys-847 palmitoylation does notaffect cell surface expression but regulates stimulation-dependent endocytosis (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000819.3 NP_015564.4 ENSEMBL proteins: ENSP00000264357 ENSP00000335428 ENSP00000360313 ENSP00000360297 ENSP00000360311 ENSP00000360302 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for GRIA3: Assays for GRIA3:
Protein
Domains/ Families for GRIA3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P42263 ProtoNet protein and cluster: P42263
3 Blocks protein families : IPB001320 Ionotropic glutamate receptor IPB001508 NMDA receptor signature IPB001828 Extracellular ligand-binding receptor UniProtKB/Swiss-Prot: GRIA3_HUMAN, P42263 Similarity : Belongs to the glutamate-gated ion channel (TC 1.A.10) family
Gene Function for GRIA3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_000828 Applied Biosystems Silencer ® siRNAs for GRIA3 Sigma-Aldrich siRNA and siRNA Panels for GRIA3 Sigma-Aldrich shRNA for GRIA3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000828                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000828                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC032004  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_007325 UniProtKB/Swiss-Prot: GRIA3_HUMAN, P42263 Function : Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at manysynapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamateinduces a conformation change, leading to the opening of the cation channel, and thereby convertsthe chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters atransient inactive state, characterized by the presence of bound agonist
Genatlas biochemistry entry for GRIA3 :glutamate receptor,subunit 3,ionotropic,AMPA (amino-3-hydroxy 5 methyl-isoxazole-propionic)class,with flip and flop isoforms,mediating the fast component of excitatory post synapticcurrents in the central nervous system,interacting with and signaling through the protein-kinaseLYN
9 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Gria3) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004872 receptor activity
IEA -- GO:0004970 ionotropic glutamate receptor activity
IEA -- GO:0005216 ion channel activity
IEA -- GO:0005234 extracellular-glutamate-gated ion channel activity
IEA --
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Pathways & Interactions for GRIA3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for GRIA3 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for GRIA3 5/14 Interacting proteins for GRIA3 (ENSP00000360302 3 ) via UniProtKB, MINT, and/or STRING (see all 14
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for GRIA3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GRIA3
Compounds for GRIA3 available from Tocris Bioscience About this table 3 Novoseek chemical compound relationships for GRIA3 gene
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Transcripts for GRIA3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4 ): NM_000828 Sigma-Aldrich siRNA and siRNA Panels for GRIA3 Sigma-Aldrich shRNA for GRIA3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000828 NM_007325
REFSEQ mRNAs for GRIA3 gene (2 alternative transcripts): NM_000828.4 NM_007325.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000828 NM_007325
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000828                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000828                                  untagged cDNA clones in CMV expression vector (see all 5 ): BC032004  
Additional cDNA sequence: AK297136.1 BC032004.1 BC117464.1 U10301.1 U10302.1
11 DOTS entries : DT.456066 DT.442710 DT.65288259 DT.121322982 DT.75138177 DT.121322946 DT.97804511 DT.121322980 DT.121322984 DT.65288776 DT.91744130
24/86 AceView cDNA sequences (see all 86
):NM_007325 AW166130 BQ416790 BM683403 AW166119 AI680688 AW207024 NM_000828 BE220607 Z40626 AI358903 BE503011 AI160594 AV708569 BX119058 BF110551 BE220304 BX109400 AW875738 BX506894 BG680842 AI589333 BX954052 AI379066
highest scoring ESTs for GRIA3 :U10301 AI680688 BE669805 AI379066 AI589333 AL712243 AL712867 AW373375 AW875738 AW875741
Unigene Cluster for GRIA3: Glutamate receptor, ionotrophic, AMPA 3 Hs.377070 [show with all ESTs ] Unigene Representative Sequence: NM_000828 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for GRIA3 ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 SP1 :         -     -   -       -                       -         SP2 :         -     -   -       -                         -       SP3 :         -                                           SP4 :             -   -                                     SP5 :         -     -   -                                    
About this scheme ECgene alternative splicing isoforms for GRIA3 6 Ensembl transcripts including schematic representations : ENST00000264357
ENST00000335161
ENST00000371266
ENST00000371251
ENST00000371264
ENST00000371256
Expression for GRIA3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GRIA3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GRIA3 1 / 2 / 3
11 probe-sets matching GRIA3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGGTATTGTASOURCE GeneReport for Unigene cluster: Hs.377070 Expression variation in blood from EXPOLDB for GRIA3
Orthologs for GRIA3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GRIA3 gene from 5/9 species (see all 9
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
GRIA31
--
glutamate receptor, ionotrophic, AMPA 3
94.67(n) 98.66(a)
492110 XM_859653.1 XP_864746.1
cow (Bos taurus)
GRIA31
--
glutamate receptor, ionotrophic, AMPA 3
94.89(n) 98.77(a)
534626 XM_614460.3 XP_614460.3
rat (Rattus norvegicus)
Gria31
--
glutamate receptor, ionotrophic, AMPA 3
94.59(n) 99.44(a)
29628 NM_032990.1 NP_116785.1
mouse (Mus musculus)
Gria31 , 5
X (13.30 cM) 5
glutamate receptor, ionotropic, AMPA3 (alpha 3)1, 5
95.01(n) 1 99.32(a) 1
53623 1 NM_016886.2 1 NP_058582.2 1 AB022342 5 AB079072 5 (see all 26 )
chicken (Gallus gallus)
GRIA31
--
glutamate receptor, ionotrophic, AMPA 3
83.86(n) 94.82(a)
396138 NM_205215.1 NP_990546.1
About this table Species with no ortholog for GRIA3 ENSEMBL Gene Tree for GRIA3 Paralogs for GRIA3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GRIA3 gene GRIA2 2 GRIA4 2 GRIA1 2
SNPs/Variants for GRIA3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GRIA3 (up to first 250kb)
Disorders & Mutations for GRIA3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 305915 disorders : 300699 UniProtKB/Swiss-Prot: GRIA3_HUMAN, P42263
Defects in GRIA3 are the cause of mental retardation X-linked type 94 (MRX94)[MIM:300699]. Mental retardation is characterized by significantly sub-average generalintellectual functioning associated with impairments in adaptative behavior and manifested duringthe developmental period. MRX94 patients have moderate mental retardation. Other variable featuresare macrocephaly, seizures, myoclonic jerks, autistic behavior, asthenic body habitus, distalmuscle weakness and hyporeflexia
5 Novoseek disease relationships for GRIA3 gene
About this table Human Gene Mutation Database : GRIA3 Human Genome Epidemiology Navigator: GRIA3 (4 documents)
Medical News for GRIA3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GRIA3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/100 PubMed articles for GRIA3 gene (see all 100
): Candidate gene analysis in Rett syndrome and the identification of 21 SNPs in Xq. (PubMed id 10602120) 1, 3, 4 Amir R.... Zoghbi H.Y. (2000) Characterization of the human glutamate receptor subunit 3 gene (GRIA3), a candidate for bipolar disorder and nonspecific X-linked mental retardation. (PubMed id 10644433) 1, 2, 3 Gecz J....Mulley J.C. (1999) Mutations in ionotropic AMPA receptor 3 alter channel properties and are associated with moderate cognitive impairment in humans. (PubMed id 17989220) 3, 4 Wu Y.... Wang T. (2007) The DNA sequence of the human X chromosome. (PubMed id 15772651) 3, 4 Ross M.T.... Bentley D.R. (2005) Human glutamate receptor hGluR3 flip and flop isoforms: cloning and sequencing of the cDNAs and primary structure of the proteins. (PubMed id 7918660) 3, 4 Rampersad V.... Kamboj R.K. (1994) Chromosomal localization of human glutamate receptor genes. (PubMed id 1319477) 2, 3 McNamara J.O....Heinemann S.F. (1992) TCR activation eliminates glutamate receptor GluR3 from the cell surface of normal human T cells, via an autocrine/paracrine granzyme B-mediated proteolytic cleavage. (PubMed id 17202328) 1, 3 Ganor Y....Levite M. (2007) Ca2+ permeability of KA-AMPA--gated glutamate receptor channels depends on subunit composition. (PubMed id 1709304) 1, 3 Hollmann M....Heinemann S. (1991) Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis. (PubMed id 19156168) 3 Need A.C....Goldstein D.B. (2009) Genetic and clinical predictors of sexual dysfunction in citalopram-treated depressed patients. (PubMed id 19295509) 3 Perlis R.H....McMahon F.J. (2009)
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Genome Databases showing GRIA3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GRIA3
(According to HUGE )
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Specialized Databases showing GRIA3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Licensable Technologies for GRIA3 gene: Services for GRIA3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GRIA3:
Antibodies & Assays for GRIA3   (GluR3)
Tocris compounds for GRIA3
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Aliases for GRIA3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009