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Aliases & Descriptions for GRIA1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases GLUH1 2 , 3 GLUR1 2 , 3 , 5 GLURA 1 , 2 GluR-1 3 GluR-A 3 GluR-K1 3 HBGR1 2 MGC133252 2
Descriptions AMPA 1 2 AMPA-selective glutamate receptor 1 3 Glutamate receptor ionotropic, AMPA 1 3 glutamate receptor, ionotropic, AMPA 1 2
Search outside databases for aliases for GRIA1 genePrevious GC identifers: GC05P152945 GC05P153467 GC05P152898
Summaries for GRIA1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GRIA1 : Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalianbrain and are activated in a variety of normal neurophysiologic processes. These receptors areheteromeric protein complexes with multiple subunits, each possessing transmembrane regions, andall arranged to form a ligand-gated ion channel. The classification of glutamate receptors isbased on their activation by different pharmacologic agonists. This gene belongs to a family ofalpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate (AMPA) receptors. Alternatively splicedtranscript variants encoding different isoforms have been found for this gene. [provided byRefSeq] UniProtKB/Swiss-Prot: GRIA1_HUMAN, P42261 Function : Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at manysynapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamateinduces a conformation change, leading to the opening of the cation channel, and thereby convertsthe chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters atransient inactive state, characterized by the presence of bound agonist
Gene Wiki entry for GRIA1
Genomic Location for GRIA1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GRIA1 gene Entrez Gene cytogenetic band: 5q33|5q31.1 Ensembl cytogenetic band: 5q33.2 HGNC cytogenetic band: 5q33 GRIA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05P152850:
(about GC identifiers )
Start:
152,850,499 bp from pter
End:
153,171,354 bp from pter
Size:
320,856 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000005.8 NT_029289.10 Proteins for GRIA1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GRIA1_HUMAN, P42261 (See
protein sequence )Recommended Name: Glutamate receptor 1 precursor Size : 906 amino acids; 101506 Da
Subunit : Homotetramer or heterotetramer of pore-forming glutamate receptor subunits. Tetramers maybe formed by the dimerization of dimers. Interacts with DLG1 via its C-terminus. Interacts withCACNG2, HIP1 and RASGRF2 (By similarity)
Subcellular location : Cell membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane;Multi-pass membrane protein (By similarity). Cell junction, synapse, postsynaptic cell membrane;Multi-pass membrane protein. Note=Interaction with CACNG2 promotes cell surface expression (Bysimilarity)
Miscellaneous : The postsynaptic actions of Glu are mediated by a variety of receptors that arenamed according to their selective agonists. This receptor binds AMPA (quisqualate) > glutamate >kainate
Secondary accessions : Q2NKM6Alternative splicing : 2 isoforms : P42261-1 P42261-2
Post-translational modifications:
Palmitoylated. Depalmitoylated upon glutamate stimulation. Cys-603 palmitoylation leads to Golgiretention and decreased cell surface expression. In contrast, Cys-829 palmitoylation does notaffect cell surface expression but regulates stimulation-dependent endocytosis (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000818.2 NP_001107655.1 ENSEMBL proteins: ENSP00000339343 ENSP00000285900 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/9 Gene Ontology (GO) cellular component terms (links to tree view) (see all 9
):
About this table Antibodies for GRIA1: Assays for GRIA1:
Protein
Domains/ Families for GRIA1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P42261 ProtoNet protein and cluster: P42261
3 Blocks protein families : IPB001320 Ionotropic glutamate receptor IPB001508 NMDA receptor signature IPB001828 Extracellular ligand-binding receptor UniProtKB/Swiss-Prot: GRIA1_HUMAN, P42261 Similarity : Belongs to the glutamate-gated ion channel (TC 1.A.10) family
Gene Function for GRIA1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
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Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000827 Applied Biosystems Silencer ® siRNAs for GRIA1 Sigma-Aldrich siRNA and siRNA Panels for GRIA1 Sigma-Aldrich shRNA for GRIA1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000827                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000827                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000827  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000827 UniProtKB/Swiss-Prot: GRIA1_HUMAN, P42261 Function : Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at manysynapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamateinduces a conformation change, leading to the opening of the cation channel, and thereby convertsthe chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters atransient inactive state, characterized by the presence of bound agonist
Genatlas biochemistry entry for GRIA1 :glutamate receptor,subunit 1,ionotropic,AMPA (amino-3-hydroxy 5 methyl-isoxazole-propionic)class,with flip and flop isoforms,mediating the fast component of excitatory post synapticcurrents in the central nervous system,interacting with and signaling through the protein-kinaseLYN
7 MGI mutant phenotypes (inferred from 9 alleles ) (MGI details for Gria1) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GRIA1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Sigma-Aldrich "Your Favorite Gene" Pathways for GRIA1 (Your Favorite Gene powered by Ingenuity) (see all 7
) Gene Network CentralTM Interacting Genes and Proteins Network for GRIA1 5/64 Interacting proteins for GRIA1 (P42261 2 ENSP00000285900 3 ) via UniProtKB, MINT, and/or STRING (see all 64
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for GRIA1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GRIA1
Compounds for GRIA1 available from Tocris Bioscience About this table 10/12 Novoseek chemical compound relationships for GRIA1 gene (see all 12
)
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Transcripts for GRIA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000827 Sigma-Aldrich siRNA and siRNA Panels for GRIA1 Sigma-Aldrich shRNA for GRIA1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000827 NM_001114183
REFSEQ mRNAs for GRIA1 gene (2 alternative transcripts): NM_000827.3 NM_001114183.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000827 NM_001114183
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000827                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000827                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000827  
Additional cDNA sequence: AB209094.1 AK289565.1 AK294011.1 AK294773.1 AK295039.1 AK295184.1 AK295827.1 AK310189.1 AK315934.1 BC111734.1 M64752.1 M81886.1 X58633.1 Z70220.1
7 DOTS entries : DT.91694020 DT.91694012 DT.100745104 DT.216973 DT.120883509 DT.91694015 DT.120883502
24/90 AceView cDNA sequences (see all 90
):AL120214 AI160145 AI371990 AL707273 AW236612 CA438561 T31307 F09838 BE222984 CB054445 F12208 F07524 Z39984 F03756 AL538420 BE551874 AW450563 AV718331 Z45881 N47974 F11057 T33928 AL567302 R87613
highest scoring ESTs for GRIA1 :M64752 M81886 F06917 F07524 F12177 X58633 AL538420 AW894126 AW897598 BF090061
Unigene Cluster for GRIA1: Glutamate receptor, ionotropic, AMPA 1 Hs.519693 [show with all ESTs ] Unigene Representative Sequence: NM_000827 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for GRIA1 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b · 18c SP1 :                                 -             SP2 :         -                           -           SP3 :         -                         -            
About this scheme ECgene alternative splicing isoforms for GRIA1 2 Ensembl transcripts including schematic representations : ENST00000340592
ENST00000285900
Expression for GRIA1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GRIA1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GRIA1 1 / 2 / 3
7 probe-sets matching GRIA1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGCGGATAAASOURCE GeneReport for Unigene cluster: Hs.519693 Expression variation in blood from EXPOLDB for GRIA1
UniProtKB/Swiss-Prot: GRIA1_HUMAN, P42261 Tissue specificity : Widely expressed in brain
Orthologs for GRIA1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GRIA1 gene from 5/8 species (see all 8
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
GRIA11
--
glutamate receptor, ionotropic, AMPA 1
94.08(n) 99.67(a)
489168 XM_848305.1 XP_853398.1
chimpanzee (Pan troglodytes)
GRIA11
--
glutamate receptor, ionotropic, AMPA 1
98.31(n) 99.01(a)
471714 XM_527092.2 XP_527092.2
mouse (Mus musculus)
Gria11 , 5
11 (31.00 cM) 5
glutamate receptor, ionotropic, AMPA1 (alpha 1)1, 5
90.25(n) 1 98.68(a) 1
14799 1 NM_008165.2 1 NP_032191.2 1 AI853806 5 AK013661 5 (see all 17 )
chicken (Gallus gallus)
GRIA11
--
glutamate receptor, ionotropic, AMPA 1
82.71(n) 93.02(a)
414893 NM_001001774.1 NP_001001774.1
zebrafish (Danio rerio)
AF525742.12
--
--
77.18(n)
AF525742.1
About this table Species with no ortholog for GRIA1 ENSEMBL Gene Tree for GRIA1 Paralogs for GRIA1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GRIA1 gene GRIA2 2 GRIA4 2 GRIA3 2
SNPs/Variants for GRIA1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GRIA1 (up to first 250kb)
Disorders & Mutations for GRIA1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 138248 10/11 Novoseek disease relationships for GRIA1 gene (see all 11
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
schizophrenia
26.88
12
17942280 (3), 16526023 (3), 7609609 (2), 9099808 (1) (see all 5 )
alzheimers disease
25.89
10
10588576 (3), 7969894 (2), 7542540 (2), 9466422 (1) (see all 5 )
bipolar disorder
24.70
2
17942280 (1), 18484081 (1)
drug withdrawal
21.30
2
9832144 (1), 16616767 (1)
epilepsy
20.60
4
9455976 (2), 8985700 (2)
neurofibrillary tangles
19.65
1
7542540 (1)
brain diseases
18.30
2
7969894 (1), 7542540 (1)
amyotrophic lateral sclerosis
18.10
1
8981413 (1)
inflammation
4.75
1
19116032 (1)
necrosis
0.00
5
10868778 (2), 12460558 (2), 9367294 (1)
About this table Human Genome Epidemiology Navigator: GRIA1 (7 documents)
Medical News for GRIA1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GRIA1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/236 PubMed articles for GRIA1 gene (see all 236
): Molecular cloning and chromosomal localization of one of the human glutamate receptor genes. (PubMed id 1652753) 2, 3, 4 Puckett C.... Hood L.E. (1991) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The human glutamate receptor cDNA GluR1: cloning, sequencing, expression and localization to chromosome 5. (PubMed id 1320959) 3, 4 Potier M.-C.... Carter N.P. (1992) Chromosomal localization of human glutamate receptor genes. (PubMed id 1319477) 2, 3 McNamara J.O....Heinemann S.F. (1992) Molecular cloning, chromosomal mapping, and functional expression of human brain glutamate receptors. (PubMed id 1311100) 3, 4 Sun W.... Montal M. (1992) Glutamate AMPA receptor subunit 1 gene (GRIA1) and DSM-IV-TR schizophrenia: a pilot case-control association study in an Italian sample. (PubMed id 16526023) 1, 3 Magri C....Barlati S. (2006) Synapse-associated protein 97 selectively associates with a subset of AMPA receptors early in their biosynthetic pathway. (PubMed id 11567040) 1, 3 Sans N....Wenthold R.J. (2001) Identification of the Ca2+/calmodulin-dependent protein kinase II regulatory phosphorylation site in the alpha-amino-3-hydroxyl-5-methyl-4-isoxazole-propionate-type glutamate receptor. (PubMed id 9407043) 1, 3 Barria A....Soderling T. (1997) Polymorphisms in the GRIA1 gene region in psychotic bipolar disorder. (PubMed id 18484081) 1, 3 Kerner B....Freimer N.B. (2008) A novel anterograde trafficking signal present in the N-terminal extracellular domain of ionotropic glutamate receptors. (PubMed id 12368290) 1, 3 Xia H....Malenka R.C. (2002)
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Genome Databases showing GRIA1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GRIA1
(According to HUGE )
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Specialized Databases showing GRIA1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GRIA1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GRIA1:
Tocris compounds for GRIA1
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Aliases for GRIA1
Databases for GRIA1
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Drugs/Compounds for GRIA1
Expression for GRIA1
Function for GRIA1
Location for GRIA1
Medical News for GRIA1
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Pathways/Interactions for GRIA1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009