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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

GRAPL Gene

protein-coding   GIFtS: 36
GCID: GC17P019030

GRB2-Related Adaptor Protein-Like

  Search for GRAPL
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
GRB2-Related Adaptor Protein-Like1 2
GRB2-Related Adapter Protein LOC4005812
GRB2-Related Adapter Protein-Like2

External Ids:    HGNC: 372401   Entrez Gene: 4005812   Ensembl: ENSG000001891527   UniProtKB: Q8TC173   

Export aliases for GRAPL gene to outside databases

Previous GC identifer: GC17P018972


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for GRAPL Gene: 
GRAPL (GRB2-related adaptor protein-like) is a protein-coding gene. An important paralog of this gene is GRAP.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.2  NT_010718.16  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for GRAPL
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GRAPL


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p11.2   Ensembl cytogenetic band:  17p11.2   HGNC cytogenetic band: 17p11.2

GRAPL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GRAPL gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P019030:  view genomic region     (about GC identifiers)

Start:
19,030,782 bp from pter      End:
19,062,489 bp from pter
Size:
31,708 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: GRAPL_HUMAN, Q8TC17 (See protein sequence)
Recommended Name: GRB2-related adapter protein-like  
Size: 118 amino acids; 13442 Da
Secondary accessions: B2RXI8
Alternative splicing: 2 isoforms:  Q8TC17-1   Q8TC17-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for GRAPL: NX_Q8TC17

GRAPL Protein expression data from MOPED1, PaxDb2 and MAXQB3 : --

REFSEQ proteins: NP_001123250.1  
ENSEMBL proteins: 
 ENSP00000437409   ENSP00000466091   ENSP00000465788   ENSP00000459618   ENSP00000464934  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
SH2D: SH2 domain containing

2 InterPro protein domains:
 IPR001452 SH3_domain
 IPR000980 SH2

Graphical View of Domain Structure for InterPro Entry Q8TC17

ProtoNet protein and cluster: Q8TC17

UniProtKB/Swiss-Prot: GRAPL_HUMAN, Q8TC17
Similarity: Belongs to the GRB2/sem-5/DRK family
Similarity: Contains 1 SH2 domain
Similarity: Contains 1 SH3 domain


GRAPL for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
     
GRAPL for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GRAPL

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for GRAPL

Search CenterWatch for drugs/clinical trials and news about GRAPL

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for GRAPL gene: 
NM_001129778.1  

Unigene Clusters for GRAPL:

GRB2-related adaptor protein-like
Hs.661470  [show with all ESTs], Hs.677674  [show with all ESTs]
Unigene Representative Sequences: BC060883, BM925205
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000344415(uc010cqk.1) ENST00000577213 ENST00000437957 ENST00000574324
ENST00000583540
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Additional mRNA sequence: 

BC026233.1 BC157869.1 

6 DOTS entries:

DT.108652  DT.120923553  DT.100831755  DT.92026222  DT.400143  DT.91821104 

3 AceView cDNA sequences:

BG541579 BC026233 BX405191 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for GRAPL    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1:                              
SP2:              -               


ECgene alternative splicing isoforms for GRAPL

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

GRAPL expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAGGATGACC
GRAPL Expression
About this image


Genevestigator expression for GRAPL

SOURCE GeneReport for Unigene clusters: Hs.661470 Hs.677674
    SABiosciences Custom PCR Arrays for GRAPL
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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GRAPL

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for GRAPL gene from 4/10 species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves GRAP6
Uncharacterized protein
38(a)
1 → many
14(5158279-5162171)
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
37(a)
1 → many
GL343618.1(349579-368900)
zebrafish
(Danio rerio)
Actinopterygii grapb6
grapa6
GRB2-related adaptor protein a
32(a)
31(a)
many ↔ many
many ↔ many
1(7192320-7219398)
3(39625712-39642803)
worm
(Caenorhabditis elegans)
Secernentea nck-16
Protein NCK-1, isoform a
12(a)
possible ortholog
X(4148649-4153443)
        Species with no ortholog for GRAPL

ENSEMBL Gene Tree for GRAPL (if available)
TreeFam Gene Tree for GRAPL (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for GRAPL gene
GRAP2  NCK12  NCK22  GRAP22  GRB22  
18/32 SIMAP similar genes for GRAPL using alignment to 5 protein entries:     GRAPL_HUMAN (see all proteins) (see all similar genes):
GRAP    GRB2    ITSN1    SH3RF3    GRAP2    ARHGEF7
CRK    SH3RF1    ITSN2    ABL1    YES1    SH3GL1
BCR/ABL fusion    BTK    HCK    FYN    LCK    SH3GL2

GRAPL for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10 SNPs in GRAPL are shown    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 17 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs2017831141,2
--19042674(+) AGACA-/TGGGTC 1 -- int10--------
rs2003817081,2
--19042675(+) GACAG-/TGGTCA 1 -- int10--------
rs1855864021,2
C--19045947(+) GAGCCA/CTTGAC 1 -- int10--------
rs3687717401,2
C--19050505(+) AGTGGC/TATCCT 1 -- int10--------
rs3745278271,2
----19049849(+) TACTCA/GGAAGG 1 -- int10--------
rs3756539041,2
----19050330(+) GTAGG-/GTTGTGT 1 -- int10--------
rs2021839001,2
----19050364(+) TGTGT-/GCG   
   CGCGC
GCGCG
1 -- int10--------
rs2015785071,2
----19050363(+) GTGTGC/TGCGCG 1 -- int10--------
rs2000375971,2
----19050909(+) GGGGGC/GCACAG 1 -- int10--------
rs3777520251,2
----19034362(+) AGAGTA/GTGCCA 1 -- int10--------

HapMap Linkage Disequilibrium report for GRAPL (19030782 - 19062489 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10/34 variations for GRAPL (see all 34):    About this table     
Variant IDTypeSubtypePubMed ID
dgv3090n71CNV Loss21882294
nsv907844CNV Loss21882294
nsv907825CNV Loss21882294
nsv2001CNV Loss18451855
dgv3082n71CNV Loss21882294
dgv3083n71CNV Loss21882294
dgv3088n71CNV Loss21882294
dgv3098n71CNV Loss21882294
nsv833391CNV Loss17160897
dgv3094n71CNV Loss21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for GRAPL gene integrated from 9 sources:
(articles sorted by number of sources associating them with GRAPL)
    Utopia: connect your pdf to the dynamic
world of online information

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)2 Zody M.C.... Nusbaum C. (2006)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  4. Identification of differential protein expression associated with development of unstable human carotid plaques. (PubMed id 16507914)9 Slevin M....Gaffney J. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 400581 HGNC: 37240 AceView: LOC400581 Ensembl:ENSG00000189152 euGenes: HUgn400581
ECgene: GRAPL H-InvDB: GRAPL

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for GRAPL Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for GRAPL gene:
Search GeneIP for patents involving GRAPL

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GRAPL
 inGenious Targeting Laboratory - Custom generated mouse model solutions for GRAPL
 inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for GRAPL
Customized:
 lentivirus for stable overexpression of GRAPL
 lentivirus expression plasmids for stable overexpression of GRAPL
 adenovirus for overexpression of GRAPL
 Search LSBio for Antibodies for GRAPL
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
       
GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

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