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Aliases for GRAMD1A Gene

Aliases for GRAMD1A Gene

  • GRAM Domain Containing 1A 2 3 5
  • KIAA1533 2 3 4
  • GRAM Domain-Containing Protein 1A 3

External Ids for GRAMD1A Gene

Previous HGNC Symbols for GRAMD1A Gene

  • KIAA1533

Previous GeneCards Identifiers for GRAMD1A Gene

  • GC19P040174
  • GC19P035486
  • GC19P031999
  • GC19P035533
  • GC19P035679
  • GC19P035789
  • GC19P035952
  • GC19P034995
  • GC19P035094
  • GC19P035200
  • GC19P035264

Summaries for GRAMD1A Gene

GeneCards Summary for GRAMD1A Gene

GRAMD1A (GRAM Domain Containing 1A) is a Protein Coding gene. An important paralog of this gene is GRAMD1B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GRAMD1A Gene

Genomics for GRAMD1A Gene

Regulatory Elements for GRAMD1A Gene

Enhancers for GRAMD1A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F034994 1.8 FANTOM5 Ensembl ENCODE 37.5 +6.1 6148 13.5 HDGF PKNOX1 MLX ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 SLC30A9 TMEM147-AS1 KMT2B ZNF792 LSM14A GRAMD1A HAUS5 RBM42 ENSG00000267049 KIAA0355 ENSG00000269086
GH19F034972 1.8 FANTOM5 Ensembl ENCODE 31.2 -20.3 -20286 3.4 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF302 LSM14A KMT2B KIAA0355 TMEM147-AS1 ZNF792 SCN1B ENSG00000267049 HAUS5 RBM42 GRAMD1A
GH19F035010 1.2 Ensembl ENCODE 23.6 +18.3 18323 5.0 HDGF ARID4B SIN3A ZNF48 ZNF121 ZNF143 ZNF263 YY2 MXD4 REST GRAMD1A ENSG00000271049 TMEM147-AS1 HAUS5 ZNF30 ENSG00000269303 ENSG00000271032
GH19F035037 1.4 Ensembl ENCODE 13.9 +46.0 46011 6.4 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B DMAP1 YY1 ZNF302 FOS GRAMD1A ENSG00000271032 ENSG00000232680 HPN LOC100421064
GH19F035008 0.7 ENCODE 18.6 +14.7 14692 1.5 BCOR SMARCA5 ZNF639 ZMYM3 ZIC2 ZNF121 GLIS2 ZNF366 POLR2A KDM1A GRAMD1A ENSG00000269303 ENSG00000271032
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GRAMD1A on UCSC Golden Path with GeneCards custom track

Genomic Location for GRAMD1A Gene

Chromosome:
19
Start:
34,994,784 bp from pter
End:
35,026,471 bp from pter
Size:
31,688 bases
Orientation:
Plus strand

Genomic View for GRAMD1A Gene

Genes around GRAMD1A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GRAMD1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GRAMD1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GRAMD1A Gene

Proteins for GRAMD1A Gene

  • Protein details for GRAMD1A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96CP6-GRM1A_HUMAN
    Recommended name:
    GRAM domain-containing protein 1A
    Protein Accession:
    Q96CP6
    Secondary Accessions:
    • A6NKY7
    • Q8NC77
    • Q9P1Z5

    Protein attributes for GRAMD1A Gene

    Size:
    724 amino acids
    Molecular mass:
    80680 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GRAMD1A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GRAMD1A Gene

Post-translational modifications for GRAMD1A Gene

  • Ubiquitination at Lys 87, Lys 513, and Lys 655
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for GRAMD1A Gene

Domains & Families for GRAMD1A Gene

Gene Families for GRAMD1A Gene

Protein Domains for GRAMD1A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GRAMD1A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96CP6

UniProtKB/Swiss-Prot:

GRM1A_HUMAN :
  • Contains 1 GRAM domain.
Domain:
  • Contains 1 GRAM domain.
  • Contains 1 VASt domain.
genes like me logo Genes that share domains with GRAMD1A: view

Function for GRAMD1A Gene

Gene Ontology (GO) - Molecular Function for GRAMD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with GRAMD1A: view

Phenotypes for GRAMD1A Gene

GenomeRNAi human phenotypes for GRAMD1A:
genes like me logo Genes that share phenotypes with GRAMD1A: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GRAMD1A Gene

Localization for GRAMD1A Gene

Subcellular locations from UniProtKB/Swiss-Prot for GRAMD1A Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GRAMD1A gene
Compartment Confidence
cytosol 3
plasma membrane 2
nucleus 2
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for GRAMD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GRAMD1A: view

Pathways & Interactions for GRAMD1A Gene

SuperPathways for GRAMD1A Gene

No Data Available

Interacting Proteins for GRAMD1A Gene

Gene Ontology (GO) - Biological Process for GRAMD1A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GRAMD1A Gene

Transcripts for GRAMD1A Gene

Unigene Clusters for GRAMD1A Gene

GRAM domain containing 1A:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GRAMD1A Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^
SP1: - - - - - - -
SP2: - - - -
SP3:
SP4: -
SP5:
SP6: - - - - -
SP7:
SP8: -
SP9:
SP10:

ExUns: 19 ^ 20 ^ 21a · 21b ^ 22a · 22b ^ 23
SP1: -
SP2: -
SP3: -
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for GRAMD1A Gene

GeneLoc Exon Structure for
GRAMD1A
ECgene alternative splicing isoforms for
GRAMD1A

Expression for GRAMD1A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GRAMD1A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GRAMD1A Gene

This gene is overexpressed in Whole Blood (x9.0).

Protein differential expression in normal tissues from HIPED for GRAMD1A Gene

This gene is overexpressed in Urine (51.8) and Fetal Brain (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for GRAMD1A Gene



Protein tissue co-expression partners for GRAMD1A Gene

NURSA nuclear receptor signaling pathways regulating expression of GRAMD1A Gene:

GRAMD1A

SOURCE GeneReport for Unigene cluster for GRAMD1A Gene:

Hs.515351
genes like me logo Genes that share expression patterns with GRAMD1A: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for GRAMD1A Gene

Orthologs for GRAMD1A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GRAMD1A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GRAMD1A 34 35
  • 99.49 (n)
dog
(Canis familiaris)
Mammalia GRAMD1A 34 35
  • 91.68 (n)
cow
(Bos Taurus)
Mammalia GRAMD1A 34 35
  • 91.58 (n)
mouse
(Mus musculus)
Mammalia Gramd1a 34 16 35
  • 87.56 (n)
rat
(Rattus norvegicus)
Mammalia Gramd1a 34
  • 86.91 (n)
oppossum
(Monodelphis domestica)
Mammalia GRAMD1A 35
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GRAMD1A 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gramd1a 34
  • 62.11 (n)
zebrafish
(Danio rerio)
Actinopterygii gramd1a 34 35
  • 59.48 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG30284 35
  • 20 (a)
ManyToMany
CG34394 35
  • 18 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea ZC328.3 35
  • 23 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 35
  • 10 (a)
ManyToMany
YSP2 35
  • 10 (a)
ManyToMany
Species where no ortholog for GRAMD1A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GRAMD1A Gene

ENSEMBL:
Gene Tree for GRAMD1A (if available)
TreeFam:
Gene Tree for GRAMD1A (if available)

Paralogs for GRAMD1A Gene

Paralogs for GRAMD1A Gene

(3) SIMAP similar genes for GRAMD1A Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with GRAMD1A: view

Variants for GRAMD1A Gene

Sequence variations from dbSNP and Humsavar for GRAMD1A Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10401496 -- 34,994,197(+) GAAAC(C/T)GTGAC upstream-variant-2KB
rs10401620 -- 34,993,938(+) AGCCA(A/G)AGAAT upstream-variant-2KB
rs10401725 -- 34,994,352(+) CCCTA(C/T)GATGC upstream-variant-2KB
rs10402496 -- 34,994,365(+) GCAGC(A/G)GCTAA upstream-variant-2KB
rs10405544 -- 35,006,937(+) AAGGA(C/T)ATTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GRAMD1A Gene

Variant ID Type Subtype PubMed ID
nsv473828 CNV novel sequence insertion 20440878
esv3644225 CNV loss 21293372

Variation tolerance for GRAMD1A Gene

Residual Variation Intolerance Score: 21.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.43; 77.23% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GRAMD1A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GRAMD1A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GRAMD1A Gene

Disorders for GRAMD1A Gene

Relevant External Links for GRAMD1A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GRAMD1A

No disorders were found for GRAMD1A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GRAMD1A Gene

Publications for GRAMD1A Gene

  1. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 64
  2. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for GRAMD1A Gene

Sources for GRAMD1A Gene

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