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Aliases for GPRC5D Gene

Aliases for GPRC5D Gene

  • G Protein-Coupled Receptor Class C Group 5 Member D 2 3 5
  • G Protein-Coupled Receptor, Family C, Group 5, Member D 2
  • G Protein-Coupled Receptor, Class C, Group 5, Member D 2

External Ids for GPRC5D Gene

Previous GeneCards Identifiers for GPRC5D Gene

  • GC12M012824
  • GC12M013238
  • GC12M012993
  • GC12M012985
  • GC12M012986
  • GC12M012987
  • GC12M013093

Summaries for GPRC5D Gene

Entrez Gene Summary for GPRC5D Gene

  • The protein encoded by this gene is a member of the G protein-coupled receptor family; however, the specific function of this gene has not yet been determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for GPRC5D Gene

GPRC5D (G Protein-Coupled Receptor Class C Group 5 Member D) is a Protein Coding gene. Among its related pathways are GPCRs, Class C Metabotropic glutamate, pheromone. GO annotations related to this gene include G-protein coupled receptor activity. An important paralog of this gene is GPRC5A.

Gene Wiki entry for GPRC5D Gene

Additional gene information for GPRC5D Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPRC5D Gene

Genomics for GPRC5D Gene

Regulatory Elements for GPRC5D Gene

Enhancers for GPRC5D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H013193 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -223.6 -223576 19 TBP PKNOX1 NFIB KLF17 SIN3A FEZF1 BATF RAD21 RFX5 YY1 HTR7P1 MIR614 GSG1 DDX47 GPRC5D-AS1 ENSG00000255621 HEBP1 ENSG00000221611 LOH12CR2 ENSG00000256011
GH12H012895 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +83.2 83241 1 ZNF362 ZBTB21 JUN CEBPB ZEB2 EP300 ZNF121 JUND PRDM6 ZNF629 ENSG00000256011 GPRC5D GPRC5A DUSP16 GC12P012921
GH12H012834 1.5 Ensembl ENCODE dbSUPER 10.5 +140.9 140934 8 PKNOX1 SIN3A FEZF1 BRCA1 ZNF2 GTF3C2 ZNF121 GLIS2 KLF7 FOS DDX47 RPL13AP20 GPRC5A LOC100506248 MIR614 ENSG00000256011 GPRC5D-AS1 GPRC5D LRP6 GC12P012833
GH12H012924 1.3 ENCODE dbSUPER 11.4 +52.9 52923 3 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 TCF12 ATF7 MXD4 REST GPRC5D-AS1 GPRC5D ENSG00000256011 GPRC5A MIR614
GH12H012921 1 FANTOM5 Ensembl ENCODE 10.6 +57.6 57565 1 POLR2A CEBPB MAFK GPRC5D ENSG00000256011 GPRC5D-AS1 MIR614
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GPRC5D on UCSC Golden Path with GeneCards custom track

Genomic Location for GPRC5D Gene

Chromosome:
12
Start:
12,940,554 bp from pter
End:
12,979,517 bp from pter
Size:
38,964 bases
Orientation:
Minus strand

Genomic View for GPRC5D Gene

Genes around GPRC5D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRC5D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRC5D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRC5D Gene

Proteins for GPRC5D Gene

  • Protein details for GPRC5D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZD1-GPC5D_HUMAN
    Recommended name:
    G-protein coupled receptor family C group 5 member D
    Protein Accession:
    Q9NZD1
    Secondary Accessions:
    • Q3KNV3
    • Q7Z5J9
    • Q8TDS6

    Protein attributes for GPRC5D Gene

    Size:
    345 amino acids
    Molecular mass:
    38791 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GPRC5D Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GPRC5D Gene

Post-translational modifications for GPRC5D Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GPRC5D Gene

No data available for DME Specific Peptides for GPRC5D Gene

Domains & Families for GPRC5D Gene

Gene Families for GPRC5D Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for GPRC5D Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GPRC5D Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NZD1

UniProtKB/Swiss-Prot:

GPC5D_HUMAN :
  • Belongs to the G-protein coupled receptor 3 family.
Family:
  • Belongs to the G-protein coupled receptor 3 family.
genes like me logo Genes that share domains with GPRC5D: view

Function for GPRC5D Gene

Phenotypes From GWAS Catalog for GPRC5D Gene

Gene Ontology (GO) - Molecular Function for GPRC5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
genes like me logo Genes that share ontologies with GPRC5D: view
genes like me logo Genes that share phenotypes with GPRC5D: view

Animal Model Products

  • Taconic Biosciences Mouse Models for GPRC5D

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for GPRC5D
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GPRC5D Gene

Localization for GPRC5D Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPRC5D Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GPRC5D gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for GPRC5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane NAS 11311935
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with GPRC5D: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for GPRC5D Gene

Pathways & Interactions for GPRC5D Gene

genes like me logo Genes that share pathways with GPRC5D: view

Pathways by source for GPRC5D Gene

1 BioSystems pathway for GPRC5D Gene

Interacting Proteins for GPRC5D Gene

Gene Ontology (GO) - Biological Process for GPRC5D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with GPRC5D: view

No data available for SIGNOR curated interactions for GPRC5D Gene

Drugs & Compounds for GPRC5D Gene

No Compound Related Data Available

Transcripts for GPRC5D Gene

mRNA/cDNA for GPRC5D Gene

(4) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GPRC5D Gene

G protein-coupled receptor, family C, group 5, member D:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for GPRC5D
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for GPRC5D Gene

No ASD Table

Relevant External Links for GPRC5D Gene

GeneLoc Exon Structure for
GPRC5D
ECgene alternative splicing isoforms for
GPRC5D

Expression for GPRC5D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GPRC5D Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GPRC5D Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x33.9) and Skin - Sun Exposed (Lower leg) (x6.0).

Protein differential expression in normal tissues from HIPED for GPRC5D Gene

This gene is overexpressed in Hair follicle (45.2) and Serum (23.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GPRC5D Gene



Protein tissue co-expression partners for GPRC5D Gene

NURSA nuclear receptor signaling pathways regulating expression of GPRC5D Gene:

GPRC5D

SOURCE GeneReport for Unigene cluster for GPRC5D Gene:

Hs.644599

mRNA Expression by UniProt/SwissProt for GPRC5D Gene:

Q9NZD1-GPC5D_HUMAN
Tissue specificity: Widely expressed in the peripheral system. Expression pattern is high in pancreas, medium in kidney, small intestine, spleen and testis, low in lung, colon, leukocyte, prostate and thymus and not detectable in brain, heart, liver, placenta, skeletal muscle and ovary.

Evidence on tissue expression from TISSUES for GPRC5D Gene

  • Skin(4.2)
genes like me logo Genes that share expression patterns with GPRC5D: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for GPRC5D Gene

Orthologs for GPRC5D Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPRC5D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPRC5D 33 34
  • 99.13 (n)
dog
(Canis familiaris)
Mammalia GPRC5D 34 33
  • 88.21 (n)
OneToOne
cow
(Bos Taurus)
Mammalia GPRC5D 33 34
  • 85.46 (n)
mouse
(Mus musculus)
Mammalia Gprc5d 33 16 34
  • 84.45 (n)
rat
(Rattus norvegicus)
Mammalia Gprc5d 33
  • 83.53 (n)
oppossum
(Monodelphis domestica)
Mammalia GPRC5D 34
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 56 (a)
OneToMany
-- 34
  • 44 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 34
  • 47 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 45 (a)
ManyToMany
-- 34
  • 38 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii GPRC5A 34
  • 29 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 19 (a)
OneToMany
Species where no ortholog for GPRC5D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPRC5D Gene

ENSEMBL:
Gene Tree for GPRC5D (if available)
TreeFam:
Gene Tree for GPRC5D (if available)

Paralogs for GPRC5D Gene

Paralogs for GPRC5D Gene

(3) SIMAP similar genes for GPRC5D Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GPRC5D: view

Variants for GPRC5D Gene

Sequence variations from dbSNP and Humsavar for GPRC5D Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000064075 -- 12,943,032(+) CTGGC(C/T)TCAAA intron-variant
rs1000168465 -- 12,948,551(+) TTACA(A/T)ATTAG intron-variant
rs1000399523 -- 12,947,958(+) GAGAT(G/T)GGTTT intron-variant
rs1000505118 -- 12,947,299(+) AAGTT(A/G)TTGTT intron-variant
rs1000682054 -- 12,941,679(+) GTCTT(C/T)ACAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GPRC5D Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV deletion 23290073
nsv520173 CNV loss 19592680
nsv832333 CNV gain 17160897

Variation tolerance for GPRC5D Gene

Residual Variation Intolerance Score: 39.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.25; 40.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GPRC5D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRC5D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPRC5D Gene

Disorders for GPRC5D Gene

Relevant External Links for GPRC5D

Genetic Association Database (GAD)
GPRC5D
Human Genome Epidemiology (HuGE) Navigator
GPRC5D
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GPRC5D

No disorders were found for GPRC5D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPRC5D Gene

Publications for GPRC5D Gene

  1. Cloning and characterization of a human orphan family C G-protein coupled receptor GPRC5D. (PMID: 11311935) Bräuner-Osborne H … O'Hara P (Biochimica et biophysica acta 2001) 3 4 22 60
  2. L-type voltage-dependent calcium channel alpha subunit 1C is a novel candidate gene associated with secondary hyperparathyroidism: an application of haplotype-based analysis for multiple linked single nucleotide polymorphisms. (PMID: 20424473) Yokoyama K … Hosoya T (Nephron. Clinical practice 2010) 3 45 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. Identification of G protein-coupled receptor genes from the human genome sequence. (PMID: 12044878) Takeda S … Mitaku S (FEBS letters 2002) 3 4 60
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60

Products for GPRC5D Gene

Sources for GPRC5D Gene

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