Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GPRC5C Gene

Aliases for GPRC5C Gene

  • G Protein-Coupled Receptor Class C Group 5 Member C 2 3
  • G Protein-Coupled Receptor, Class C, Group 5, Member C 2 3 5
  • G Protein-Coupled Receptor, Family C, Group 5, Member C 2 3
  • Retinoic Acid-Induced Gene 3 Protein 3 4
  • RAIG-3 3 4
  • RAIG3 3 4
  • Retinoic Acid Responsive Gene Protein 3
  • Orphan G-Protein Coupled Receptor 3

External Ids for GPRC5C Gene

Previous GeneCards Identifiers for GPRC5C Gene

  • GC17M072433
  • GC17P075486
  • GC17P072891
  • GC17P073025
  • GC17P073024
  • GC17P069938
  • GC17P072427
  • GC17P067838

Summaries for GPRC5C Gene

Entrez Gene Summary for GPRC5C Gene

  • The protein encoded by this gene is a member of the type 3 G protein-coupled receptor family. Members of this superfamily are characterized by a signature 7-transmembrane domain motif. The specific function of this protein is unknown; however, this protein may mediate the cellular effects of retinoic acid on the G protein signal transduction cascade. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for GPRC5C Gene

GPRC5C (G Protein-Coupled Receptor Class C Group 5 Member C) is a Protein Coding gene. Among its related pathways are GPCRs, Class C Metabotropic glutamate, pheromone. GO annotations related to this gene include G-protein coupled receptor activity. An important paralog of this gene is GPRC5B.

UniProtKB/Swiss-Prot for GPRC5C Gene

  • This retinoic acid-inducible G-protein coupled receptor provide evidence for a possible interaction between retinoid and G-protein signaling pathways.

Gene Wiki entry for GPRC5C Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPRC5C Gene

Genomics for GPRC5C Gene

Regulatory Elements for GPRC5C Gene

Genomic Location for GPRC5C Gene

Chromosome:
17
Start:
74,424,503 bp from pter
End:
74,451,658 bp from pter
Size:
27,156 bases
Orientation:
Plus strand

Genomic View for GPRC5C Gene

Genes around GPRC5C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRC5C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRC5C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRC5C Gene

Proteins for GPRC5C Gene

  • Protein details for GPRC5C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQ84-GPC5C_HUMAN
    Recommended name:
    G-protein coupled receptor family C group 5 member C
    Protein Accession:
    Q9NQ84
    Secondary Accessions:
    • B5BUN4
    • Q2NL85
    • Q9NZG5

    Protein attributes for GPRC5C Gene

    Size:
    441 amino acids
    Molecular mass:
    48193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH16860.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI10849.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI25081.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI25082.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAG54752.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAC00633.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for GPRC5C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GPRC5C Gene

Proteomics data for GPRC5C Gene at MOPED

Post-translational modifications for GPRC5C Gene

  • Glycosylation at Asn 191
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for GPRC5C Gene

Domains & Families for GPRC5C Gene

Gene Families for GPRC5C Gene

Protein Domains for GPRC5C Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GPRC5C Gene

Graphical View of Domain Structure for InterPro Entry

Q9NQ84

UniProtKB/Swiss-Prot:

GPC5C_HUMAN :
  • Belongs to the G-protein coupled receptor 3 family.
Family:
  • Belongs to the G-protein coupled receptor 3 family.
genes like me logo Genes that share domains with GPRC5C: view

Function for GPRC5C Gene

Molecular function for GPRC5C Gene

UniProtKB/Swiss-Prot Function:
This retinoic acid-inducible G-protein coupled receptor provide evidence for a possible interaction between retinoid and G-protein signaling pathways.
UniProtKB/Swiss-Prot Induction:
By all-trans retinoic acid (ATRA).
genes like me logo Genes that share phenotypes with GPRC5C: view

Animal Models for GPRC5C Gene

MGI Knock Outs for GPRC5C:

Animal Model Products

  • Taconic Biosciences Mouse Models for GPRC5C

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for GPRC5C Gene

Localization for GPRC5C Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPRC5C Gene

Cell membrane; Multi-pass membrane protein. Cytoplasmic vesicle membrane; Multi-pass membrane protein. Note=Localized in the plasma membrane and perinuclear vesicles.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GPRC5C Gene COMPARTMENTS Subcellular localization image for GPRC5C gene
Compartment Confidence
extracellular 5
plasma membrane 5
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for GPRC5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 10783259
GO:0043235 receptor complex IDA 23382219
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with GPRC5C: view

Pathways & Interactions for GPRC5C Gene

genes like me logo Genes that share pathways with GPRC5C: view

Pathways by source for GPRC5C Gene

1 BioSystems pathway for GPRC5C Gene

Interacting Proteins for GPRC5C Gene

Gene Ontology (GO) - Biological Process for GPRC5C Gene

None

No data available for SIGNOR curated interactions for GPRC5C Gene

Drugs & Compounds for GPRC5C Gene

No Compound Related Data Available

Transcripts for GPRC5C Gene

Unigene Clusters for GPRC5C Gene

G protein-coupled receptor, family C, group 5, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GPRC5C Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10
SP1: - - - - -
SP2: - - -
SP3: - - - -
SP4: - - - - -
SP5: - -
SP6:
SP7: -

Relevant External Links for GPRC5C Gene

GeneLoc Exon Structure for
GPRC5C
ECgene alternative splicing isoforms for
GPRC5C

Expression for GPRC5C Gene

mRNA expression in normal human tissues for GPRC5C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GPRC5C Gene

This gene is overexpressed in Stomach (x5.2) and Liver (x4.6).

Protein differential expression in normal tissues from HIPED for GPRC5C Gene

This gene is overexpressed in Urine (61.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for GPRC5C Gene



SOURCE GeneReport for Unigene cluster for GPRC5C Gene Hs.446438

mRNA Expression by UniProt/SwissProt for GPRC5C Gene

Q9NQ84-GPC5C_HUMAN
Tissue specificity: Expression is highest in the periphery, particularly in the stomach, but also in the kidney, liver, pancreas, and prostate. In brain, levels of expression are generally lower than in the periphery, with the exception of cerebellum, spinal cord, and dorsal root ganglia (DRG).
genes like me logo Genes that share expression patterns with GPRC5C: view

Protein tissue co-expression partners for GPRC5C Gene

Primer Products

In Situ Assay Products

Orthologs for GPRC5C Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPRC5C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GPRC5C 35
  • 87.6 (n)
  • 86.85 (a)
GPRC5C 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GPRC5C 35
  • 89.44 (n)
  • 89.3 (a)
GPRC5C 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gprc5c 35
  • 86.74 (n)
  • 89.77 (a)
Gprc5c 16
Gprc5c 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GPRC5C 35
  • 99.04 (n)
  • 98.89 (a)
GPRC5C 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gprc5c 35
  • 86.36 (n)
  • 90 (a)
oppossum
(Monodelphis domestica)
Mammalia GPRC5C 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPRC5C 36
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves GPRC5C 35
  • 69.48 (n)
  • 65.8 (a)
GPRC5C 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GPRC5C 36
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC496814 35
  • 63.03 (n)
  • 64.72 (a)
Str.16451 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.2244 35
zebrafish
(Danio rerio)
Actinopterygii gprc5c 35
  • 58.02 (n)
  • 53.94 (a)
gprc5c 36
  • 50 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
OneToMany
Species with no ortholog for GPRC5C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPRC5C Gene

ENSEMBL:
Gene Tree for GPRC5C (if available)
TreeFam:
Gene Tree for GPRC5C (if available)

Paralogs for GPRC5C Gene

Paralogs for GPRC5C Gene

(3) SIMAP similar genes for GPRC5C Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with GPRC5C: view

Variants for GPRC5C Gene

Sequence variations from dbSNP and Humsavar for GPRC5C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs6980 -- 74,447,148(-) TTCCA(C/G)ATCTG intron-variant, utr-variant-3-prime
rs1320038 -- 74,433,788(+) GTGAC(A/G)CGCTG intron-variant
rs1320039 -- 74,433,821(+) TCCTT(G/T)GCCCT intron-variant
rs1048367 -- 74,450,469(+) AGGCC(C/T)GTGAG utr-variant-3-prime
rs1996152 -- 74,422,751(-) CAGCC(A/G)TGTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for GPRC5C Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV Duplication 17116639
dgv372n27 CNV Gain 19166990
nsv517569 CNV Gain+Loss 19592680
esv2751770 CNV Gain 17911159
nsv833539 CNV Loss 17160897
esv33995 CNV Loss 17666407
nsv908741 CNV Loss 21882294

Variation tolerance for GPRC5C Gene

Residual Variation Intolerance Score: 75.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.20; 52.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GPRC5C Gene

HapMap Linkage Disequilibrium report
GPRC5C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPRC5C Gene

Disorders for GPRC5C Gene

Relevant External Links for GPRC5C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GPRC5C

No disorders were found for GPRC5C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPRC5C Gene

Publications for GPRC5C Gene

  1. Molecular cloning and characterization of two novel retinoic acid- inducible orphan G-protein-coupled receptors (GPRC5B and GPRC5C). (PMID: 10945465) Robbins M.J. … Pangalos M.N. (Genomics 2000) 2 3 4 23 67
  2. Cloning and characterization of a human orphan family C G-protein coupled receptor GPRC5D. (PMID: 11311935) Braeuner-Osborne H. … O'Hara P. (Biochim. Biophys. Acta 2001) 3 23
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Structural basis for endosomal trafficking of diverse transmembrane cargos by PX-FERM proteins. (PMID: 23382219) Ghai R. … Collins B.M. (Proc. Natl. Acad. Sci. U.S.A. 2013) 3

Products for GPRC5C Gene

Sources for GPRC5C Gene

Back to Top

Content