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Aliases for GPRC5C Gene

Aliases for GPRC5C Gene

  • G Protein-Coupled Receptor Class C Group 5 Member C 2 3 5
  • Retinoic Acid-Induced Gene 3 Protein 3 4
  • RAIG-3 3 4
  • RAIG3 3 4
  • G Protein-Coupled Receptor, Family C, Group 5, Member C 2
  • G Protein-Coupled Receptor, Class C, Group 5, Member C 2
  • G-Protein Coupled Receptor Family C Group 5 Member C 3
  • Retinoic Acid Responsive Gene Protein 3
  • Orphan G-Protein Coupled Receptor 3

External Ids for GPRC5C Gene

Previous GeneCards Identifiers for GPRC5C Gene

  • GC17M072433
  • GC17P075486
  • GC17P072891
  • GC17P073025
  • GC17P073024
  • GC17P069938
  • GC17P072427
  • GC17P067838

Summaries for GPRC5C Gene

Entrez Gene Summary for GPRC5C Gene

  • The protein encoded by this gene is a member of the type 3 G protein-coupled receptor family. Members of this superfamily are characterized by a signature 7-transmembrane domain motif. The specific function of this protein is unknown; however, this protein may mediate the cellular effects of retinoic acid on the G protein signal transduction cascade. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for GPRC5C Gene

GPRC5C (G Protein-Coupled Receptor Class C Group 5 Member C) is a Protein Coding gene. Among its related pathways are GPCRs, Class C Metabotropic glutamate, pheromone. GO annotations related to this gene include G-protein coupled receptor activity. An important paralog of this gene is GPRC5B.

UniProtKB/Swiss-Prot for GPRC5C Gene

  • This retinoic acid-inducible G-protein coupled receptor provide evidence for a possible interaction between retinoid and G-protein signaling pathways.

Gene Wiki entry for GPRC5C Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPRC5C Gene

Genomics for GPRC5C Gene

Regulatory Elements for GPRC5C Gene

Enhancers for GPRC5C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F074477 1.3 FANTOM5 Ensembl ENCODE 25.5 +54.4 54410 3.7 ESRRA MXI1 ZNF140 MAX ZMYM3 EBF1 ZNF664 CTBP1 POLR2A KLF4 GPRC5C NAT9 CD300LB CD300E NUP85 CD300C BTBD17 CD300LD CD300LF TMEM104
GH17F074426 1.7 FANTOM5 Ensembl ENCODE 18.6 +6.1 6123 8.5 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 GPRC5C ENSG00000266765 LINC02092 ENSG00000265927 ENSG00000265935 NAT9 MRPL58 DNAI2 GC17M074409
GH17F074442 1.3 Ensembl ENCODE 21.7 +20.6 20557 5.7 PKNOX1 MLX ARID4B DMAP1 YY1 SLC30A9 SP3 SP5 ZHX2 MXD4 GPRC5C CD300A GPR142 CD300E CD300LD NT5C GC17M074409 GC17P074445
GH17F074635 1.7 FANTOM5 Ensembl ENCODE 9.8 +214.7 214723 8.3 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 SLC30A9 SP5 NFYC MXD4 CD300E CD300C CD300LB RAB37 TMEM104 CD300LF CD300LD ENSG00000236770 MIR3615 SLC9A3R1
GH17F074394 1.3 FANTOM5 Ensembl ENCODE 12 -29.3 -29336 1.9 ZIC2 ZNF316 GATA3 ZFHX2 POLR2A NFE2 FOSL2 FOS MAFK EGR2 RAB37 GPR142 GPRC5C CD300A CD300E CD300LD GRIN2C FADS6 GC17M074418 RNA5SP448
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GPRC5C on UCSC Golden Path with GeneCards custom track

Genomic Location for GPRC5C Gene

Chromosome:
17
Start:
74,424,503 bp from pter
End:
74,451,658 bp from pter
Size:
27,156 bases
Orientation:
Plus strand

Genomic View for GPRC5C Gene

Genes around GPRC5C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPRC5C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPRC5C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPRC5C Gene

Proteins for GPRC5C Gene

  • Protein details for GPRC5C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQ84-GPC5C_HUMAN
    Recommended name:
    G-protein coupled receptor family C group 5 member C
    Protein Accession:
    Q9NQ84
    Secondary Accessions:
    • B5BUN4
    • Q2NL85
    • Q9NZG5

    Protein attributes for GPRC5C Gene

    Size:
    441 amino acids
    Molecular mass:
    48193 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH16860.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI10849.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI25081.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI25082.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAG54752.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAC00633.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for GPRC5C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GPRC5C Gene

Post-translational modifications for GPRC5C Gene

  • Glycosylation at Asn 191
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for GPRC5C Gene

Domains & Families for GPRC5C Gene

Gene Families for GPRC5C Gene

Protein Domains for GPRC5C Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GPRC5C Gene

Graphical View of Domain Structure for InterPro Entry

Q9NQ84

UniProtKB/Swiss-Prot:

GPC5C_HUMAN :
  • Belongs to the G-protein coupled receptor 3 family.
Family:
  • Belongs to the G-protein coupled receptor 3 family.
genes like me logo Genes that share domains with GPRC5C: view

Function for GPRC5C Gene

Molecular function for GPRC5C Gene

UniProtKB/Swiss-Prot Function:
This retinoic acid-inducible G-protein coupled receptor provide evidence for a possible interaction between retinoid and G-protein signaling pathways.
UniProtKB/Swiss-Prot Induction:
By all-trans retinoic acid (ATRA).

Gene Ontology (GO) - Molecular Function for GPRC5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
genes like me logo Genes that share ontologies with GPRC5C: view
genes like me logo Genes that share phenotypes with GPRC5C: view

Animal Models for GPRC5C Gene

MGI Knock Outs for GPRC5C:

Animal Model Products

  • Taconic Biosciences Mouse Models for GPRC5C

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for GPRC5C Gene

Localization for GPRC5C Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPRC5C Gene

Cell membrane; Multi-pass membrane protein. Cytoplasmic vesicle membrane; Multi-pass membrane protein. Note=Localized in the plasma membrane and perinuclear vesicles.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GPRC5C gene
Compartment Confidence
plasma membrane 5
extracellular 5
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for GPRC5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0005887 integral component of plasma membrane TAS 10783259
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0030659 cytoplasmic vesicle membrane IEA --
genes like me logo Genes that share ontologies with GPRC5C: view

Pathways & Interactions for GPRC5C Gene

genes like me logo Genes that share pathways with GPRC5C: view

Pathways by source for GPRC5C Gene

1 BioSystems pathway for GPRC5C Gene

Interacting Proteins for GPRC5C Gene

Gene Ontology (GO) - Biological Process for GPRC5C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with GPRC5C: view

No data available for SIGNOR curated interactions for GPRC5C Gene

Transcripts for GPRC5C Gene

Unigene Clusters for GPRC5C Gene

G protein-coupled receptor, family C, group 5, member C:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPRC5C Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10
SP1: - - - - -
SP2: - - -
SP3: - - - -
SP4: - - - - -
SP5: - -
SP6:
SP7: -

Relevant External Links for GPRC5C Gene

GeneLoc Exon Structure for
GPRC5C
ECgene alternative splicing isoforms for
GPRC5C

Expression for GPRC5C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for GPRC5C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GPRC5C Gene

This gene is overexpressed in Stomach (x5.2) and Liver (x4.6).

Protein differential expression in normal tissues from HIPED for GPRC5C Gene

This gene is overexpressed in Urine (61.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for GPRC5C Gene



Protein tissue co-expression partners for GPRC5C Gene

NURSA nuclear receptor signaling pathways regulating expression of GPRC5C Gene:

GPRC5C

SOURCE GeneReport for Unigene cluster for GPRC5C Gene:

Hs.446438

mRNA Expression by UniProt/SwissProt for GPRC5C Gene:

Q9NQ84-GPC5C_HUMAN
Tissue specificity: Expression is highest in the periphery, particularly in the stomach, but also in the kidney, liver, pancreas, and prostate. In brain, levels of expression are generally lower than in the periphery, with the exception of cerebellum, spinal cord, and dorsal root ganglia (DRG).
genes like me logo Genes that share expression patterns with GPRC5C: view

Orthologs for GPRC5C Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPRC5C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPRC5C 34 35
  • 99.04 (n)
dog
(Canis familiaris)
Mammalia GPRC5C 34 35
  • 89.44 (n)
cow
(Bos Taurus)
Mammalia GPRC5C 34 35
  • 87.6 (n)
mouse
(Mus musculus)
Mammalia Gprc5c 34 16 35
  • 86.74 (n)
rat
(Rattus norvegicus)
Mammalia Gprc5c 34
  • 86.36 (n)
oppossum
(Monodelphis domestica)
Mammalia GPRC5C 35
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPRC5C 35
  • 74 (a)
OneToOne
chicken
(Gallus gallus)
Aves GPRC5C 34 35
  • 69.48 (n)
lizard
(Anolis carolinensis)
Reptilia GPRC5C 35
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC496814 34
  • 63.03 (n)
Str.16451 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.2244 34
zebrafish
(Danio rerio)
Actinopterygii gprc5c 34 35
  • 58.02 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
OneToMany
Species where no ortholog for GPRC5C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPRC5C Gene

ENSEMBL:
Gene Tree for GPRC5C (if available)
TreeFam:
Gene Tree for GPRC5C (if available)

Paralogs for GPRC5C Gene

Paralogs for GPRC5C Gene

(3) SIMAP similar genes for GPRC5C Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with GPRC5C: view

Variants for GPRC5C Gene

Sequence variations from dbSNP and Humsavar for GPRC5C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1048367 -- 74,450,469(+) AGGCC(C/T)GTGAG utr-variant-3-prime
rs10665430 -- 74,449,700(+) TGTGG(-/TTC)TTCAG utr-variant-3-prime
rs10719088 -- 74,451,710(+) TTTTT(-/T/TT)AATTA downstream-variant-500B
rs111239854 -- 74,447,278(+) CTCCA(A/G)CCAAA intron-variant, utr-variant-3-prime
rs111284468 -- 74,438,418(+) TCCAC(A/G)CCCGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GPRC5C Gene

Variant ID Type Subtype PubMed ID
nsv952366 CNV deletion 24416366
nsv833539 CNV loss 17160897
nsv517569 CNV gain+loss 19592680
esv3641237 CNV gain 21293372
esv3641230 CNV gain 21293372
esv3573820 CNV gain 25503493
esv33995 CNV loss 17666407
esv2761978 CNV gain 21179565
esv2751770 CNV gain 17911159
dgv5774n54 CNV gain 21841781
dgv5768n54 CNV gain 21841781
dgv372n27 CNV gain 19166990
dgv3282n100 CNV gain 25217958
dgv12e196 CNV duplication 17116639

Variation tolerance for GPRC5C Gene

Residual Variation Intolerance Score: 75.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.20; 52.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GPRC5C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GPRC5C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPRC5C Gene

Disorders for GPRC5C Gene

Relevant External Links for GPRC5C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GPRC5C

No disorders were found for GPRC5C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPRC5C Gene

Publications for GPRC5C Gene

  1. Molecular cloning and characterization of two novel retinoic acid- inducible orphan G-protein-coupled receptors (GPRC5B and GPRC5C). (PMID: 10945465) Robbins M.J. … Pangalos M.N. (Genomics 2000) 2 3 4 22 64
  2. Cloning and characterization of a human orphan family C G-protein coupled receptor GPRC5D. (PMID: 11311935) Braeuner-Osborne H. … O'Hara P. (Biochim. Biophys. Acta 2001) 3 4 22 64
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for GPRC5C Gene

Sources for GPRC5C Gene

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