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GPR88 Gene

protein-coding   GIFtS: 50
GCID: GC01P101003

G Protein-Coupled Receptor 88

(Previous names: G-protein coupled receptor 88, G protein coupled receptor...)
  Search for GPR88
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
G Protein-Coupled Receptor 881 2
G Protein Coupled Receptor 881 2
G-Protein Coupled Receptor 881 2
Striatum-Specific G-Protein Coupled Receptor2 3
STRG2 3
Probable G-Protein Coupled Receptor 882

External Ids:    HGNC: 45391   Entrez Gene: 541122   Ensembl: ENSG000001816567   OMIM: 6074685   UniProtKB: Q9GZN03   

Export aliases for GPR88 gene to outside databases

Previous GC identifers: GC01P101794 GC01P100184 GC01P100294 GC01P100466 GC01P100715 GC01P100776 GC01P099128


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for GPR88 Gene:
GPR88 (G protein-coupled receptor 88) is a protein-coding gene. GO annotations related to this gene include G-protein coupled receptor activity.

UniProtKB/Swiss-Prot: GPR88_HUMAN, Q9GZN0
Function: Orphan receptor

Gene Wiki entry for GPR88 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000001.10  NC_018912.2  NT_032977.10  
Regulatory elements:
   Regulatory transcription factor binding sites in the GPR88 gene promoter:
         p53   LCR-F1   HNF-1A   Meis-1b   S8   POU2F1   HNF-1   Meis-1a   En-1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidGPR88 promoter sequence
   Search Chromatin IP Primers for GPR88

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat GPR88


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p21.3   Ensembl cytogenetic band:  1p21.2   HGNC cytogenetic band: 1p21.3

GPR88 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GPR88 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P101003:  view genomic region     (about GC identifiers)

Start:
101,003,693 bp from pter      End:
101,007,583 bp from pter
Size:
3,891 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: GPR88_HUMAN, Q9GZN0 (See protein sequence)
Recommended Name: Probable G-protein coupled receptor 88  
Size: 384 amino acids; 40246 Da
Secondary accessions: Q29S24 Q6VN48

Explore the universe of human proteins at neXtProt for GPR88: NX_Q9GZN0

Explore proteomics data for GPR88 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn3
  • Modification sites at PhosphoSitePlus

  • See GPR88 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_071332.2  
    ENSEMBL proteins: 
     ENSP00000314223  

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    Search eBioscience for ELISAs for GPR88 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    GPCRAO: GPCR / Class A : Orphans

    IUPHAR Guide to PHARMACOLOGY protein family classification: GPR88
    Class A Orphans

    2 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q9GZN0

    ProtoNet protein and cluster: Q9GZN0

    UniProtKB/Swiss-Prot: GPR88_HUMAN, Q9GZN0
    Similarity: Belongs to the G-protein coupled receptor 1 family


    Find genes that share domains with GPR88           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: GPR88_HUMAN, Q9GZN0
    Function: Orphan receptor

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
         
    Find genes that share ontologies with GPR88           About GenesLikeMe


    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Gpr88):
     no phenotypic analysis 

    Find genes that share phenotypes with GPR88           About GenesLikeMe

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for GPR88
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for GPR88

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for GPR88
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    miRNA
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    Block miRNA regulation of human, mouse, rat GPR88 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate GPR88 (see all 39):
    hsa-miR-607 hsa-miR-15a hsa-miR-503 hsa-miR-424 hsa-miR-3658 hsa-miR-28-5p hsa-miR-330-3p hsa-miR-15b
    SwitchGear 3'UTR luciferase reporter plasmidGPR88 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat GPR88

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    Addgene plasmids for GPR88 

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GPR88


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    GPR88_HUMAN, Q9GZN0: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    nucleus1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005886plasma membrane IEA--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with GPR88           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for GPR88 About    
    See pathways by source

    SuperPathContained pathways About
    1GPCRs, Other
    GPCRs, Other


    1 BioSystems Pathway for GPR88
        GPCRs, Other


        Pathway & Disease-focused RT2 Profiler PCR Array including GPR88: 
              G Protein Coupled Receptors 384HT in human mouse rat

    Interactions:

        Search GeneGlobe Interaction Network for GPR88

    Gene Ontology (GO): 4 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway NAS11056049
    GO:0007626locomotory behavior IEA--
    GO:0019228neuronal action potential IEA--
    GO:0050885neuromuscular process controlling balance IEA--

    Find genes that share ontologies with GPR88           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for GPR88



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for GPR88 gene: 
    NM_022049.2  

    Unigene Cluster for GPR88:

    G protein-coupled receptor 88
    Hs.170053  [show with all ESTs]
    Unigene Representative Sequence: AB042410
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000315033(uc001dth.3)
    miRNA
    Products:
         
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    Selected qRT-PCR Assays for microRNAs that regulate GPR88 (see all 39):
    hsa-miR-607 hsa-miR-15a hsa-miR-503 hsa-miR-424 hsa-miR-3658 hsa-miR-28-5p hsa-miR-330-3p hsa-miR-15b
    SwitchGear 3'UTR luciferase reporter plasmidGPR88 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat GPR88
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      QuantiTect SYBR Green Assays in human, mouse, rat GPR88
      QuantiFast Probe-based Assays in human, mouse, rat GPR88

    Additional mRNA sequence: 

    AB042410.1 AF086060.1 AK225748.1 BC036775.1 BC113861.1 

    1 DOTS entry:

    DT.40112762 

    12 AceView cDNA sequences:

    BC036775 AW072585 AI261343 BM546570 BF432673 N48080 AB042410 NM_022049 
    AF086060 BP340529 AW023850 N53278 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    GPR88 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CACCATTTCT
    GPR88 Expression
    About this image


    GPR88 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 3 entries
             Metencephalon
     
     Bone (Muscoskeletal System)
             Zeugopod Epiphyseal End
     
     Brain (Nervous System)
             Cerebellum
    GPR88 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    GPR88 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.170053

    UniProtKB/Swiss-Prot: GPR88_HUMAN, Q9GZN0
    Tissue specificity: Expressed almost exclusively in striatum

        Pathway & Disease-focused RT2 Profiler PCR Array including GPR88: 
              G Protein Coupled Receptors 384HT in human mouse rat

    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GPR88

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for GPR88 gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Gpr881 , 5 G-protein coupled receptor 881, 5 90.28(n)1
    95.57(a)1
      3 (50.23 cM)5
    643781  NM_022427.21  NP_071872.11 
     1162496545 
    chicken
    (Gallus gallus)
    Aves GPR881 G protein-coupled receptor 88 74.88(n)
    74.31(a)
      769393  XM_004936915.1  XP_004936972.1 
    lizard
    (Anolis carolinensis)
    Reptilia GPR886
    G protein-coupled receptor 88
    61(a)
    1 ↔ 1
    4(87618199-87619260)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia gpr881 G protein-coupled receptor 88 57.04(n)
    53.43(a)
      100488777  XM_002934143.2  XP_002934189.1 
    zebrafish
    (Danio rerio)
    Actinopterygii gpr881 G protein-coupled receptor 88 54.87(n)
    48.74(a)
      100002845  XM_001342493.5  XP_001342529.1 


    ENSEMBL Gene Tree for GPR88 (if available)
    TreeFam Gene Tree for GPR88 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for GPR88 (see all 171)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs605076181,2
    C--101001755(+) ATGCAC/TTCAAA 1 -- us2k10--------
    rs2004683141,2
    C--101001771(+) AATAAG/TGNNNN 1 -- us2k10--------
    rs1878787371,2
    --101001785(+) GCAATA/TGGCAA 1 -- us2k10--------
    rs1918102081,2
    C--101001808(+) AAATAC/GTCATC 1 -- us2k10--------
    rs1381919131,2
    --101001857(+) CCTCTC/GAATAG 1 -- us2k10--------
    rs1828445601,2
    --101001893(+) TTCCCC/GCTCCG 1 -- us2k10--------
    rs1875130441,2
    --101002077(+) AACATC/TGCTCT 1 -- us2k10--------
    rs66919231,2
    C,F--101002078(+) ACATTG/ACTCTT 1 -- us2k14Minor allele frequency- A:0.12NA WA 124
    rs1439264311,2
    C--101002096(+) TATGAC/TCCAGA 1 -- us2k10--------
    rs1472807851,2
    C--101002311(+) GTGCTG/TCAACC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for GPR88 (101003693 - 101007583 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for GPR88:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv22185CNV Loss19812545
    nsv823653CNV Loss20364138
    nsv830826CNV Gain17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing GPR88
    DNA2.0 Custom Variant and Variant Library Synthesis for GPR88

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 607468    OMIM disorders: --


    Find genes that share disorders with GPR88           About GenesLikeMe

    Genetic Association Database (GAD): GPR88

    Export disorders for GPR88 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for GPR88 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with GPR88)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel G-protein-coupled receptor gene expressed in striatum. (PubMed id 11056049)1, 2 Mizushima K.... Ito T. (Genomics 2000)
    2. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PubMed id 17903300)4 Fox C.S....Atwood L.D. (BMC Med. Genet. 2007)
    3. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (Nature 2006)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)1 Maruyama K. and Sugano S. (Gene 1994)
    7. Region-specific transcriptional changes following the three antidepressant treatments electro convulsive therapy, sleep deprivation and fluoxetine. (PubMed id 17033635)9 Conti B....Bartfai T. (Mol. Psychiatry 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 54112 HGNC: 4539 AceView: GPR88 Ensembl:ENSG00000181656 euGenes: HUgn54112
    ECgene: GPR88 H-InvDB: GPR88

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for GPR88 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for GPR88 gene:
    Search GeneIP for patents involving GPR88

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Block miRNA regulation of human, mouse, rat GPR88 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing GPR88
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     Addgene plasmids for GPR88
      Search eBioscience for proteins for GPR88
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      eBioscience FlowRNA Probe Sets
           
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