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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

GPR82 Gene

protein-coding   GIFtS: 43
GCID: GC0XP041583

G protein-coupled receptor 82
  Search for GPR82
in
MalaCards
our new
 Human Malady Compendium 
Biological research products
for GPR82    

Aliases
for GPR82 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
G Protein-Coupled Receptor 821 2
Probable G-Protein Coupled Receptor 822

External Ids:    HGNC: 45331   Entrez Gene: 271972   Ensembl: ENSG000001716577   OMIM: 3007485   UniProtKB: Q96P673   

Export aliases for GPR82 gene to outside databases

Previous GC identifers: GC0XP039612 GC0XP039832 GC0XP040428 GC0XP040614 GC0XP041339 GC0XP041468 GC0XP039314


Summaries
for GPR82 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
Entrez Gene summary for GPR82:
The protein encoded by this gene is an orphan G protein-coupled receptor of unknown function. The encoded protein is a
member of a family of proteins that contain seven transmembrane domains and transduce extracellular signals through
heterotrimeric G proteins. (provided by RefSeq, Sep 2011)

UniProtKB/Swiss-Prot: GPR82_HUMAN, Q96P67
Function: Orphan receptor

Gene Wiki entry for GPR82


Genomic Views
for GPR82 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000023.10  NC_018934.1  NT_079573.4  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the GPR82 gene promoter:
         GR   AML1a   AP-1   POU3F2 (N-Oct-5b)   POU3F2 (N-Oct-5a)   POU3F2   Evi-1   E47   Hand1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: GPR82 promoter sequence
   Search SABiosciences Chromatin IP Primers for GPR82

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GPR82


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.4   Ensembl cytogenetic band:  Xp11.4   HGNC cytogenetic band: Xp11.4

GPR82 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GPR82 gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XP041583:  view genomic region     (about GC identifiers)

Start:
 41,583,408 bp from pter      End:
 41,589,388 bp from pter
Size:
 5,981 bases      Orientation:
 plus strand

Proteins
for GPR82 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: GPR82_HUMAN, Q96P67 (See protein sequence)
Recommended Name: Probable G-protein coupled receptor 82  
Size: 336 amino acids; 38409 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q5VT13

Explore the universe of human proteins at neXtProt for GPR82: NX_Q96P67

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96P67

    • GPR82 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_543007.1  
    ENSEMBL proteins: 
     ENSP00000303549  

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    Uscn Proteins for GPR82

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane IEA--
    GO:0016021integral to membrane IEA--


    GPR82 for ontologies           About GeneDecksing



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    Protein Domains /
    Families
    for GPR82 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    GPR82 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q96P67

    ProtoNet protein and cluster: Q96P67

    UniProtKB/Swiss-Prot: GPR82_HUMAN, Q96P67
    Similarity: Belongs to the G-protein coupled receptor 1 family


    Function
    for GPR82 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: GPR82_HUMAN, Q96P67
    Function: Orphan receptor

    miRNA
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--


    GPR82 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for GPR82:
     Increased gamma-H2AX phosphory 

    Animal Models:
         Mouse knock-out Gpr82tm1Lex for GPR82
         1 MGI mutant phenotype (inferred from 1 allele) (MGI details for Gpr82):
     normal 

    GPR82 for phenotypes           About GeneDecksing


    Pathways & Interactions
    for GPR82 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GPR82

    Drugs & Compounds
    for GPR82 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for GPR82
    Search CenterWatch for drugs/clinical trials and news about GPR82 

    Transcripts
    for GPR82 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
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    About This Section
    REFSEQ mRNAs for GPR82 gene: 
    NM_080817.4  

    Unigene Cluster for GPR82:

    G protein-coupled receptor 82
    Hs.567457  [show with all ESTs]
    Unigene Representative Sequence: NM_080817
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000302548(uc004dfu.1 uc004dft.3) ENST00000497180

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    hsa-miR-579 hsa-miR-1290 hsa-miR-1283 hsa-miR-876-5p hsa-miR-340 hsa-miR-548aa hsa-miR-888* hsa-miR-664
    SwitchGear 3'UTR luciferase reporter plasmid: GPR82 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for GPR82 (see all 4)
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    Clone
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    Primer
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    Additional cDNA sequence: 

    AJ319076.1 AK122626.1 AK313702.1 BC070180.1 

    3 DOTS entries:

    DT.100666997  DT.100000981  DT.40118022 

    14 AceView cDNA sequences:

    AJ319076 AL832460 AK122626 CB985246 AA923209 BX438968 BX503542 AA282067 
    NM_080817 AW768359 BC070180 AI819140 CB955669 BF664534 

    GeneLoc Exon Structure


    Expression
    for GPR82 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    GPR82 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TCACAGCTTG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image
    See GPR82 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for GPR82

    SOURCE GeneReport for Unigene cluster: Hs.567457
        SABiosciences Expression via Pathway-Focused PCR Array including GPR82: 
              G Protein Coupled Receptors 384HT in human mouse rat

    Primer
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GPR82

    Orthologs
    for GPR82 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    		   --

    ENSEMBL Gene Tree for GPR82 (if available)
    TreeFam Gene Tree for GPR82 (if available) 

    Paralogs
    for GPR82 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for GPR82 gene
    P2RY132  GPR1712  GPR342  GPR872  P2RY142  P2RY122  
    1 SIMAP similar gene for GPR82 using alignment to 1 protein entry:     GPR82_HUMAN:
    GPCR

    GPR82 for paralogs           About GeneDecksing



    Genomic Variants
    for GPR82 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for GPR82
         1 CNV: 7787
    Locus Specific Mutation Databases (LSDB): GPR82
    SABiosciences Cancer Mutation PCR Assays
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    Disorders / Diseases
    for GPR82 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    GPR82 for disorders           About MalaCards

    GPR82 for disorders           About GeneDecksing

    OMIM gene information: 300748    OMIM disorders: --


    Export disorders for GPR82 gene to outside databases

    Publications
    for GPR82 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for GPR82 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with GPR82)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Discovery and mapping of ten novel G protein-coupled receptor genes. (PubMed id 11574155)1, 2, 3 Lee D.K....O'Dowd B.F. (2001)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Identification of G protein-coupled receptor genes from the human genome sequence. (PubMed id 12044878)1, 2 Takeda S.... Mitaku S. (2002)
    4. A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. (PubMed id 19377476)1 Tarpey P.S.... Stratton M.R. (2009)
    5. The DNA sequence of the human X chromosome. (PubMed id 15772651)2 Ross M.T.... Bentley D.R. (2005)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    External Searches for GPR82 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing GPR82 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 27197 HGNC: 4533 AceView: GPR82 Ensembl:ENSG00000171657 euGenes: HUgn27197
    ECgene: GPR82 H-InvDB: GPR82

    Other Databases showing GPR82 gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing GPR82 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for GPR82 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for GPR82 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for GPR82 gene:
    Search GeneIP for patents involving GPR82

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

     
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