Aliases for GPR4 Gene
External Ids for GPR4 Gene
- HGNC: 4497
- Entrez Gene: 2828
- Ensembl: ENSG00000177464
- OMIM: 600551
- UniProtKB: P46093
Previous GeneCards Identifiers for GPR4 Gene
- GC19M046736
- GC19M046483
- GC19M050769
- GC19M050784
- GC19M046093
- GC19M042522
Summaries for GPR4 Gene
GeneCards Summary for GPR4 Gene
GPR4 (G Protein-Coupled Receptor 4) is a Protein Coding gene. Diseases associated with GPR4 include Central Hypoventilation Syndrome, Congenital. Among its related pathways are Peptide ligand-binding receptors and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity. An important paralog of this gene is GPR68.
UniProtKB/Swiss-Prot for GPR4 Gene
-
Proton-sensing receptor coupled to several G-proteins, including G(s), G(13) and G(q)/G(11) proteins, leading to cAMP production.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPR4 Gene
Genomics for GPR4 Gene
GeneHancer (GH) Regulatory Elements for GPR4 Gene
Promoters and enhancers for GPR4 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around GPR4 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for GPR4 Gene
Genomic Locations for GPR4 Gene
- chr19:45,589,764-45,602,208
- (GRCh38/hg38)
- Size:
- 12,445 bases
- Orientation:
- Minus strand
- chr19:46,093,022-46,105,466
- (GRCh37/hg19)
Genomic View for GPR4 Gene
Genes around GPR4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.32 by Ensembl
- 19q13.32 by Entrez Gene
- 19q13.32 by HGNC
GPR4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for GPR4 Gene
Proteins for GPR4 Gene
-
Protein details for GPR4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P46093-GPR4_HUMAN
- Recommended name:
- G-protein coupled receptor 4
- Protein Accession:
- P46093
- A8K3T3
- B0M0K1
- Q6NWM4
Protein attributes for GPR4 Gene
- Size:
- 362 amino acids
- Molecular mass:
- 40982 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAA63180.1; Type=Frameshift; Positions=347; Evidence={ECO:0000305};
Protein Expression for GPR4 Gene
Post-translational modifications for GPR4 Gene
- Glycosylation at isoforms=3 and isoforms=164
Other Protein References for GPR4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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Protein Products
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Abcam proteins for GPR4
Assay Products
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No data available for DME Specific Peptides for GPR4 Gene
Domains & Families for GPR4 Gene
Gene Families for GPR4 Gene
- HGNC:
- IUPHAR :
- Human Protein Atlas (HPA):
-
- G-protein coupled receptors
- Predicted membrane proteins
Protein Domains for GPR4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for GPR4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P46093- Family:
-
- Belongs to the G-protein coupled receptor 1 family.
Function for GPR4 Gene
Molecular function for GPR4 Gene
- GENATLAS Biochemistry:
- G protein coupled receptor 4,with homology to the platelet-activating factor receptor (PTAFR),expressed in kidney,heart and lung
- UniProtKB/Swiss-Prot Function:
- Proton-sensing receptor coupled to several G-proteins, including G(s), G(13) and G(q)/G(11) proteins, leading to cAMP production.
Phenotypes From GWAS Catalog for GPR4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004930 | G-protein coupled receptor activity | TAS,IBA | -- |
Phenotypes for GPR4 Gene
- MGI mutant phenotypes for GPR4:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for GPR4:
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-
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CRISPR Products
-
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-
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miRNA for GPR4 Gene
- miRTarBase miRNAs that target GPR4
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No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for GPR4 Gene
Localization for GPR4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for GPR4 Gene
- Cell membrane; Multi-pass membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 5 |
| extracellular | 2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | TAS | -- |
| GO:0005887 | integral component of plasma membrane | TAS | 8595909 |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from the Human Protein Atlas (HPA) for GPR4 Gene
Pathways & Interactions for GPR4 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Peptide ligand-binding receptors | ||
| 2 | Signaling by GPCR | ||
| 3 | RET signaling | ||
Pathways by source for GPR4 Gene
1 BioSystems pathway for GPR4 Gene
Interacting Proteins for GPR4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007165 | signal transduction | IEA | -- |
| GO:0007186 | G-protein coupled receptor signaling pathway | TAS | -- |
| GO:0010447 | response to acidic pH | IEA | -- |
| GO:0016525 | negative regulation of angiogenesis | IEA | -- |
| GO:0035025 | positive regulation of Rho protein signal transduction | IBA | -- |
No data available for SIGNOR curated interactions for GPR4 Gene
Transcripts for GPR4 Gene
mRNA/cDNA for GPR4 Gene
- (3) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (43) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for GPR4 Gene
CRISPR Products
-
OriGene CRISPR knockouts for GPR4
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-
Vectors and viruses for KO, Activation, Repression, and more
-
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Inhibitory RNA Products
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Clone Products
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-
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Expression for GPR4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
- Endothelium (Cardiovascular System)
mRNA differential expression in normal tissues according to GTEx for GPR4 Gene
This gene is overexpressed in Adipose - Visceral (Omentum) (x4.7).
This gene is overexpressed in Esophagus (27.8), Liver (16.0), Ovary (9.4), Urinary Bladder (6.2), and Prostate (6.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for GPR4 Gene
NURSA nuclear receptor signaling pathways regulating expression of GPR4 Gene:
GPR4SOURCE GeneReport for Unigene cluster for GPR4 Gene:
Hs.17170Evidence on tissue expression from TISSUES for GPR4 Gene
- Nervous system(4.4)
- Lung(4.3)
- Heart(2)
Primer Products
-
OriGene qPCR primer pairs for GPR4
-
OriGene qPCR primer pairs and template standards for GPR4
No data available for Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for GPR4 Gene
Orthologs for GPR4 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| dog (Canis familiaris) |
Mammalia | GPR4 33 34 |
|
||
| cow (Bos Taurus) |
Mammalia | GPR4 33 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Gpr4 33 |
|
||
| mouse (Mus musculus) |
Mammalia | Gpr4 33 16 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 34 |
|
ManyToMany | |
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
ManyToMany | |
| zebrafish (Danio rerio) |
Actinopterygii | LOC563762 33 |
|
||
| gpr4 34 |
|
OneToOne |
- Species where no ortholog for GPR4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for GPR4 Gene
Paralogs for GPR4 Gene
(11) SIMAP similar genes for GPR4 Gene using alignment to 1 proteins:
Variants for GPR4 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000116765 | -- | 45,602,359(-) | T/G | upstream_transcript_variant | |
| rs1000314680 | -- | 45,591,220(-) | C/A | coding_sequence_variant, missense_variant | |
| rs1000475905 | -- | 45,598,113(-) | C/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000487173 | -- | 45,602,779(-) | TTTTTT/TTTTTTT | upstream_transcript_variant | |
| rs1000590080 | -- | 45,597,853(-) | T/A | genic_upstream_transcript_variant, intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1941589 | CNV | deletion | 18987734 |
| esv2718633 | CNV | deletion | 23290073 |
| esv2718634 | CNV | deletion | 23290073 |
| nsv833848 | CNV | loss | 17160897 |
Residual Variation Intolerance Score:
12.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.13;
2.87% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for GPR4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- GPR4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPR4 Gene
Disorders for GPR4 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| central hypoventilation syndrome, congenital |
|
|
Search GPR4 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for GPR4
No data available for UniProtKB/Swiss-Prot and Genatlas for GPR4 Gene
Publications for GPR4 Gene
- Proton-sensing G-protein-coupled receptors. (PMID: 12955148) Ludwig MG … Seuwen K (Nature 2003) 3 4 22 58
- Isolation of a novel G protein-coupled receptor (GPR4) localized to chromosome 19q13.3. (PMID: 8595909) Mahadevan MS … Korneluk RG (Genomics 1995) 2 3 4 58
- Previously postulated "ligand-independent" signaling of GPR4 is mediated through proton-sensing mechanisms. (PMID: 17462861) Tobo M … Okajima F (Cellular signalling 2007) 3 4 58
- A novel lysophospholipid- and pH-sensitive receptor, GPR4, in brain endothelial cells regulates monocyte transmigration. (PMID: 17364894) Huang F … Lum H (Endothelium : journal of endothelial cell research 2007) 3 22 58
- Lysophosphatidylcholine impairs endothelial barrier function through the G protein-coupled receptor GPR4. (PMID: 16461426) Qiao J … Lum H (American journal of physiology. Lung cellular and molecular physiology 2006) 3 22 58
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Sources for GPR4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
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- (125) NCBI Bookshelf
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- (128) ViGene Biosciences
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- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew