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Aliases for GPR39 Gene

Aliases for GPR39 Gene

  • G Protein-Coupled Receptor 39 2 3

External Ids for GPR39 Gene

Summaries for GPR39 Gene

GeneCards Summary for GPR39 Gene

GPR39 (G Protein-Coupled Receptor 39) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity. An important paralog of this gene is TRHR.

UniProtKB/Swiss-Prot for GPR39 Gene

  • Zn(2+) acts as a agonist. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated mainly through G(q)-alpha and G(12)/G(13) proteins. Involved in regulation of body weight, gastrointestinal mobility, hormone secretion and cell death (By similarity).

Gene Wiki entry for GPR39 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPR39 Gene

Genomics for GPR39 Gene

Genomic Location for GPR39 Gene

Start:
132,416,574 bp from pter
End:
132,646,596 bp from pter
Size:
230,023 bases
Orientation:
Plus strand

Genomic View for GPR39 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GPR39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPR39 Gene

Regulatory Elements for GPR39 Gene

Proteins for GPR39 Gene

  • Protein details for GPR39 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43194-GPR39_HUMAN
    Recommended name:
    G-protein coupled receptor 39
    Protein Accession:
    O43194
    Secondary Accessions:
    • B2RC12
    • B6V9G4
    • Q08AS2
    • Q53R01

    Protein attributes for GPR39 Gene

    Size:
    453 amino acids
    Molecular mass:
    51329 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GPR39 Gene

Proteomics data for GPR39 Gene at MOPED

Post-translational modifications for GPR39 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn192, Asn206, and Asn212

Other Protein References for GPR39 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for GPR39 Gene

Domains for GPR39 Gene

Gene Families for GPR39 Gene

HGNC:
  • GPCRAO :GPCR / Class A : Orphans
IUPHAR :

Protein Domains for GPR39 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

GPR39_HUMAN
Family:
  • Belongs to the G-protein coupled receptor 1 family.:
    • O43194
genes like me logo Genes that share domains with GPR39: view

Function for GPR39 Gene

Molecular function for GPR39 Gene

GENATLAS Biochemistry: G protein coupled receptor 39,with two forms generated by alternative polyadenylation sites,highly homolog to growth hormone,secretagogue receptor (GSHR) and neurotensin receptors,expressed in the brain and other tissues
UniProtKB/Swiss-Prot Function: Zn(2+) acts as a agonist. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. Its effect is mediated mainly through G(q)-alpha and G(12)/G(13) proteins. Involved in regulation of body weight, gastrointestinal mobility, hormone secretion and cell death (By similarity).

Gene Ontology (GO) - Molecular Function for GPR39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with GPR39: view
genes like me logo Genes that share phenotypes with GPR39: view

Animal Models for GPR39 Gene

MGI Knock Outs for GPR39:

miRNA for GPR39 Gene

miRTarBase miRNAs that target GPR39

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for GPR39 Gene

Localization for GPR39 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPR39 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GPR39 Gene COMPARTMENTS Subcellular localization image for GPR39 gene
Compartment Confidence
plasma membrane 5
extracellular 1

Gene Ontology (GO) - Cellular Components for GPR39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane TAS 9441746
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with GPR39: view

Pathways for GPR39 Gene

genes like me logo Genes that share pathways with GPR39: view

Pathways by source for GPR39 Gene

Gene Ontology (GO) - Biological Process for GPR39 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
genes like me logo Genes that share ontologies with GPR39: view

Compounds for GPR39 Gene

(1) IUPHAR Ligand for GPR39 Gene

Ligand Type Action Affinity Pubmed IDs
Zn2+ Channel blocker None 6
genes like me logo Genes that share compounds with GPR39: view

Transcripts for GPR39 Gene

mRNA/cDNA for GPR39 Gene

Unigene Clusters for GPR39 Gene

G protein-coupled receptor 39:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GPR39 Gene

No ASD Table

Relevant External Links for GPR39 Gene

GeneLoc Exon Structure for
GPR39
ECgene alternative splicing isoforms for
GPR39

Expression for GPR39 Gene

mRNA expression in normal human tissues for GPR39 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GPR39 Gene

This gene is overexpressed in Colon - Transverse (8.4), Stomach (5.4), Bladder (4.9), Liver (4.2), and Pancreas (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GPR39 Gene

SOURCE GeneReport for Unigene cluster for GPR39 Gene Hs.744392

mRNA Expression by UniProt/SwissProt for GPR39 Gene

O43194-GPR39_HUMAN
Tissue specificity: Expressed in many tissues, including the stomach, intestine and hypothalamus.
genes like me logo Genes that share expressions with GPR39: view

Orthologs for GPR39 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPR39 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPR39 36
  • 99.41 (n)
  • 99.12 (a)
GPR39 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GPR39 36
  • 83.81 (n)
  • 82.12 (a)
GPR39 37
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GPR39 36
  • 82.28 (n)
  • 79.16 (a)
GPR39 37
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gpr39 36
  • 80.21 (n)
  • 81.68 (a)
Gpr39 16
Gpr39 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GPR39 37
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gpr39 36
  • 79.18 (n)
  • 80.79 (a)
chicken
(Gallus gallus)
Aves GPR39 36
  • 67.49 (n)
  • 63.29 (a)
GPR39 37
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 64 (a)
OneToMany
-- 37
  • 55 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii gpr39 36
  • 57.73 (n)
  • 50.78 (a)
gpr39 37
  • 43 (a)
OneToOne
zgc64187 36
Species with no ortholog for GPR39:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPR39 Gene

ENSEMBL:
Gene Tree for GPR39 (if available)
TreeFam:
Gene Tree for GPR39 (if available)

Paralogs for GPR39 Gene

Paralogs for GPR39 Gene

Selected SIMAP similar genes for GPR39 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for GPR39 Gene

genes like me logo Genes that share paralogs with GPR39: view

Variants for GPR39 Gene

Sequence variations from dbSNP and Humsavar for GPR39 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs223 -- 132,615,083(-) AAGCA(A/T)CCAAG intron-variant
rs817 -- 132,615,085(-) CAAAG(A/C/T)AACCA intron-variant
rs714546 -- 132,545,630(-) TATAA(A/G)ATGGT intron-variant
rs717434 -- 132,545,655(-) CACAC(A/G)CCCAT intron-variant
rs764716 -- 132,490,751(-) CCCAC(C/T)CAGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GPR39 Gene

Variant ID Type Subtype PubMed ID
dgv1247e1 CNV Complex 17122850
essv21727 CNV CNV 17122850
nsv526029 CNV Gain 19592680
esv4378 CNV Complex 18987735
nsv2929 CNV Insertion 18451855
nsv875136 CNV Gain 21882294
nsv875137 CNV Gain 21882294
nsv834378 CNV Loss 17160897
nsv10192 CNV Loss 18304495
dgv732e199 CNV Deletion 23128226
nsv471734 CNV Loss 16327809
esv22729 CNV Loss 19812545
esv2720834 CNV Deletion 23290073
nsv459429 CNV Loss 19166990
nsv508106 CNV Loss 20534489
esv24608 CNV Loss 19812545
esv2675998 CNV Deletion 23128226
dgv1262e1 CNV Complex 17122850
dgv228n21 CNV Gain 19592680
dgv34n64 CNV Gain 17921354
dgv1263e1 CNV Complex 17122850
nsv10193 CNV Gain 18304495
esv259482 OTHER Complex 20981092
esv259844 OTHER Complex 20981092
esv29562 CNV Gain 19812545
esv2422046 CNV Duplication 20811451
nsv433356 CNV Gain 18776910
nsv459441 CNV Gain 19166990
nsv442835 CNV CNV 18776908
dgv1264e1 CNV Complex 17122850
nsv2930 CNV Insertion 18451855
nsv10194 CNV Loss 18304495
nsv213758 CNV Loss 16902084
esv2659330 CNV Deletion 23128226
esv28074 CNV Loss 19812545

Relevant External Links for GPR39 Gene

HapMap Linkage Disequilibrium report
GPR39

Disorders for GPR39 Gene

Relevant External Links for GPR39

Genetic Association Database (GAD)
GPR39
Human Genome Epidemiology (HuGE) Navigator
GPR39
genes like me logo Genes that share disorders with GPR39: view

No data available for UniProtKB/Swiss-Prot for GPR39 Gene

Publications for GPR39 Gene

  1. Cloning and characterization of two human G protein-coupled receptor genes (GPR38 and GPR39) related to the growth hormone secretagogue and neurotensin receptors. (PMID: 9441746) McKee K.K. … van der Ploeg L.H.T. (Genomics 1997) 2 3 4 23
  2. Molecular mechanism of Zn2+ agonism in the extracellular domain of GPR39. (PMID: 18588883) Storjohann L. … Schwartz T.W. (FEBS Lett. 2008) 3 4 23
  3. Obestatin does not activate orphan G protein-coupled receptor GPR39. (PMID: 17054911) Lauwers E. … Luyten W. (Biochem. Biophys. Res. Commun. 2006) 3 23
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4

Products for GPR39 Gene

Sources for GPR39 Gene

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