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Aliases for GPR173 Gene

Aliases for GPR173 Gene

  • G Protein-Coupled Receptor 173 2 3 5
  • Super Conserved Receptor Expressed In Brain 3 3 4
  • SREB3 3 4
  • G-Protein Coupled Receptor 173 2
  • G Protein Coupled Receptor 173 2

External Ids for GPR173 Gene

Previous GeneCards Identifiers for GPR173 Gene

  • GC0XP052961
  • GC0XP053095
  • GC0XP050140

Summaries for GPR173 Gene

Entrez Gene Summary for GPR173 Gene

  • This gene encodes a member of the G-protein coupled receptor 1 family. This protein contains 7 transmembrane domains and conserved cysteine residues. [provided by RefSeq, Nov 2009]

GeneCards Summary for GPR173 Gene

GPR173 (G Protein-Coupled Receptor 173) is a Protein Coding gene. Among its related pathways are Peptide ligand-binding receptors. GO annotations related to this gene include G-protein coupled receptor activity and gonadotropin-releasing hormone receptor activity. An important paralog of this gene is HTR2C.

UniProtKB/Swiss-Prot for GPR173 Gene

  • Orphan receptor.

Gene Wiki entry for GPR173 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPR173 Gene

Genomics for GPR173 Gene

Regulatory Elements for GPR173 Gene

Promoters for GPR173 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around GPR173 on UCSC Golden Path with GeneCards custom track

Genomic Location for GPR173 Gene

Chromosome:
X
Start:
53,049,091 bp from pter
End:
53,080,615 bp from pter
Size:
31,525 bases
Orientation:
Plus strand

Genomic View for GPR173 Gene

Genes around GPR173 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPR173 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPR173 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPR173 Gene

Proteins for GPR173 Gene

  • Protein details for GPR173 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NS66-GP173_HUMAN
    Recommended name:
    Probable G-protein coupled receptor 173
    Protein Accession:
    Q9NS66
    Secondary Accessions:
    • B1B0A5

    Protein attributes for GPR173 Gene

    Size:
    373 amino acids
    Molecular mass:
    41481 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GPR173 Gene

Proteomics data for GPR173 Gene at MOPED

Post-translational modifications for GPR173 Gene

  • Glycosylation at Asn 3 and Asn 184
  • Modification sites at PhosphoSitePlus

Other Protein References for GPR173 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Santa Cruz Biotechnology (SCBT) Antibodies for GPR173

No data available for DME Specific Peptides for GPR173 Gene

Domains & Families for GPR173 Gene

Gene Families for GPR173 Gene

Protein Domains for GPR173 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GPR173 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NS66

UniProtKB/Swiss-Prot:

GP173_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with GPR173: view

Function for GPR173 Gene

Molecular function for GPR173 Gene

UniProtKB/Swiss-Prot Function:
Orphan receptor.
genes like me logo Genes that share phenotypes with GPR173: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GPR173 Gene

Localization for GPR173 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPR173 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GPR173 Gene COMPARTMENTS Subcellular localization image for GPR173 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for GPR173 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA,IBA --
genes like me logo Genes that share ontologies with GPR173: view

Pathways & Interactions for GPR173 Gene

SuperPathways for GPR173 Gene

genes like me logo Genes that share pathways with GPR173: view

Pathways by source for GPR173 Gene

1 BioSystems pathway for GPR173 Gene

Interacting Proteins for GPR173 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000331600%0d%0a9606.ENSP00000349238%0d%0a9606.ENSP00000386444%0d%0a
Selected Interacting proteins: ENSP00000331600 for GPR173 Gene via STRING

Gene Ontology (GO) - Biological Process for GPR173 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0097211 cellular response to gonadotropin-releasing hormone IEA --
genes like me logo Genes that share ontologies with GPR173: view

No data available for SIGNOR curated interactions for GPR173 Gene

Drugs & Compounds for GPR173 Gene

No Compound Related Data Available

Transcripts for GPR173 Gene

mRNA/cDNA for GPR173 Gene

Unigene Clusters for GPR173 Gene

G protein-coupled receptor 173:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GPR173 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b
SP1:
SP2: -

Relevant External Links for GPR173 Gene

GeneLoc Exon Structure for
GPR173
ECgene alternative splicing isoforms for
GPR173

Expression for GPR173 Gene

mRNA expression in normal human tissues for GPR173 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for GPR173 Gene Hs.193011

mRNA Expression by UniProt/SwissProt for GPR173 Gene

Q9NS66-GP173_HUMAN
Tissue specificity: Expressed at high levels in brain and ovary. Lower levels in small intestine. In brain regions, detected in all regions tested. Highest levels in the cerebellum and cerebral cortex.
genes like me logo Genes that share expression patterns with GPR173: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for GPR173 Gene

Orthologs for GPR173 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPR173 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GPR173 35
  • 98.75 (n)
  • 97.84 (a)
GPR173 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GPR173 36
  • 99 (a)
OneToOne
GPR173 35
  • 95.08 (n)
  • 99.46 (a)
dog
(Canis familiaris)
Mammalia GPR173 35
  • 94.82 (n)
  • 99.73 (a)
GPR173 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gpr173 16
Gpr173 36
  • 99 (a)
OneToOne
Gpr173 35
  • 94.64 (n)
  • 99.46 (a)
oppossum
(Monodelphis domestica)
Mammalia GPR173 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gpr173 35
  • 94.64 (n)
  • 99.46 (a)
chicken
(Gallus gallus)
Aves GPR27 35
  • 73.94 (n)
  • 72.52 (a)
lizard
(Anolis carolinensis)
Reptilia GPR173 36
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gpr173 35
  • 74.12 (n)
  • 82.48 (a)
zebrafish
(Danio rerio)
Actinopterygii gpr173 36
  • 78 (a)
OneToOne
gpr173 35
  • 74.41 (n)
  • 81.08 (a)
Species with no ortholog for GPR173:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GPR173 Gene

ENSEMBL:
Gene Tree for GPR173 (if available)
TreeFam:
Gene Tree for GPR173 (if available)

Paralogs for GPR173 Gene

Paralogs for GPR173 Gene

(2) SIMAP similar genes for GPR173 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GPR173: view

Variants for GPR173 Gene

Sequence variations from dbSNP and Humsavar for GPR173 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs7049463 -- 53,067,622(+) agatc(A/G)agacc intron-variant
rs6650047 -- 53,064,350(+) gattg(C/T)ttgag intron-variant
rs7065011 -- 53,067,237(+) CATGG(C/T)CCCTT intron-variant
rs7473078 -- 53,055,617(+) GTGGT(G/T)TGGAG intron-variant
rs11091720 -- 53,077,683(+) ACTCA(C/T)GCCCC reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for GPR173 Gene

Variant ID Type Subtype PubMed ID
nsv435891 CNV Deletion 17901297
esv2740175 CNV Deletion 23290073
nsv508773 CNV Insertion 20534489
esv24544 CNV Gain 19812545
esv1009949 CNV Insertion 20482838

Variation tolerance for GPR173 Gene

Residual Variation Intolerance Score: 16.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.43; 9.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GPR173 Gene

HapMap Linkage Disequilibrium report
GPR173

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPR173 Gene

Disorders for GPR173 Gene

Relevant External Links for GPR173

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GPR173

No disorders were found for GPR173 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GPR173 Gene

Publications for GPR173 Gene

  1. An evolutionarily conserved G-protein coupled receptor family, SREB, expressed in the central nervous system. (PMID: 10833454) Matsumoto M. … Furuichi K. (Biochem. Biophys. Res. Commun. 2000) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. (PMID: 19377476) Tarpey P.S. … Stratton M.R. (Nat. Genet. 2009) 3
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. A conserved mRNA expression profile of SREB2 (GPR85) in adult human, monkey, and rat forebrain. (PMID: 15893849) Matsumoto M. … Kleinman J.E. (Brain Res. Mol. Brain Res. 2005) 23

Products for GPR173 Gene

Sources for GPR173 Gene

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