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Aliases & Descriptions for GPLD1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 3.1.4.50 3 GPI-PLD 3 GPIPLD 2 , 5 GPIPLDM 2 MGC22590 2 OTTHUMP00000017721 2 OTTHUMP00000017722 2 OTTHUMP00000039407 2 PIGPLD 2 , 5 PIGPLD1 2 , 3
Descriptions GPI-specific phospholipase D 2 , 3 Glycoprotein phospholipase D 2 , 3 Glycosyl-phosphatidylinositol-specific phospholipase D 3 PI-G PLD 3 glycosylphosphatIdylinositol-specific phospholipase D 2 glycosylphosphatidylinositol specific phospholipase D1 2 glycosylphosphatidylinositol specific phospholipase D1, isoform 2 2 phospholipase D, phosphatidylinositol-glycan-specific 2
Search outside databases for aliases for GPLD1 genePrevious GC identifer: GC06M024485
Summaries for GPLD1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GPLD1 : Many proteins are tethered to the extracellular face of eukaryotic plasma membranes by aglycosylphosphatidylinositol (GPI) anchor. The GPI-anchor is a glycolipid found on many bloodcells. The protein encoded by this gene is a GPI degrading enzyme. Glycosylphosphatidylinositolspecific phospholipase D1 hydrolyzes the inositol phosphate linkage in proteins anchored byphosphatidylinositol glycans, thereby releasing the attached protein from the plasma membrane.[provided by RefSeq] UniProtKB/Swiss-Prot: PHLD_HUMAN, P80108 Function : This protein hydrolyzes the inositol phosphate linkage in proteins anchored byphosphatidylinositol glycans (GPI-anchor) thus releasing these proteins from the membrane
Gene Wiki entry for GPLD1
Genomic Location for GPLD1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GPLD1 gene Entrez Gene cytogenetic band: 6p22.3-p22.2 Ensembl cytogenetic band: 6p22.2 HGNC cytogenetic band: 6p22.1 GPLD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M024536:
(about GC identifiers )
Start:
24,536,384 bp from pter
End:
24,597,829 bp from pter
Size:
61,446 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000006.10 NT_007592.14 Proteins for GPLD1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PHLD_HUMAN, P80108 (See
protein sequence )Recommended Name: Phosphatidylinositol-glycan-specific phospholipase D precursor Size : 840 amino acids; 92336 Da
Subunit : Monomer (Potential)
Subcellular location : Secreted
Sequence caution : Sequence=AAA36444.1; Type=Miscellaneous discrepancy; Note=This sequence hasnumerous of conflicts with the human genome;
Secondary accessions : Q15127 Q15128 Q2M2F2 Q5T3Y0 Q7Z6T8 Q8TCV0 Q8WW82 Q96ID6 Q9H167 Q9H4M1 Q9UJC9Alternative splicing : 2 isoforms : P80108-1 P80108-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001494.2 NP_803436.1 ENSEMBL proteins: ENSP00000230036 ENSP00000367489 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
About this table Antibodies for GPLD1: Assays for GPLD1:
Protein
Domains/ Families for GPLD1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P80108 ProtoNet protein and cluster: P80108
1 Blocks protein family : IPB001028 Phospholipase D signature UniProtKB/Swiss-Prot: PHLD_HUMAN, P80108 Similarity : Belongs to the GPLD1 familySimilarity : Contains 4 FG-GAP repeats
Gene Function for GPLD1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_177483 Applied Biosystems Silencer ® siRNAs for GPLD1 Sigma-Aldrich siRNA and siRNA Panels for GPLD1 Sigma-Aldrich shRNA for GPLD1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001503                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001503                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001503  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001503 UniProtKB/Swiss-Prot: PHLD_HUMAN, P80108 Function : This protein hydrolyzes the inositol phosphate linkage in proteins anchored byphosphatidylinositol glycans (GPI-anchor) thus releasing these proteins from the membrane Catalytic activity : 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + H(2)O =6-(alpha-D-glucosaminyl)-1D-myo-inositol + phosphatidate Enzyme Number (IUBMB): EC 3.1.4.50
2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004621 glycosylphosphatidylinositol phospholipase D activity
IEA -- GO:0016787 hydrolase activity
IEA --
About this table
Pathways & Interactions for GPLD1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5 Sigma-Aldrich "Your Favorite Gene" Pathways for GPLD1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GPLD1 5/14 Interacting proteins for GPLD1 (ENSP00000230036 3 ) via UniProtKB, MINT, and/or STRING (see all 14
)About this table
Drugs & Compounds for GPLD1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for GPLD1 10/12 Novoseek chemical compound relationships for GPLD1 gene (see all 12
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
sodium nitrite
62.80
4
1708886 (1), 1378620 (1), 8300589 (1), 9144552 (1)
1,10-phenanthroline
54.77
4
17467053 (1), 14611645 (1), 7512501 (1), 15893415 (1)
phosphatidylinositol
36.72
3
1313004 (1), 8917344 (1), 15620691 (1)
agarose
20.53
1
8081252 (1)
lipid
20.11
6
1396675 (1), 17761367 (1), 14611645 (1), 7908190 (1) (see all 5 )
sialic acid
16.22
2
7670541 (1)
polyacrylamide
15.50
1
8081252 (1)
cholesterol
6.81
7
10486566 (1), 11254757 (1), 17761367 (1), 8081252 (1) (see all 6 )
phospholipid
0.00
1
1835378 (1)
glucose
0.00
4
16114550 (2), 15907827 (1)
About this table
Transcripts for GPLD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_177483 Sigma-Aldrich siRNA and siRNA Panels for GPLD1 Sigma-Aldrich shRNA for GPLD1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001503 NM_177483
REFSEQ mRNAs for GPLD1 gene (2 alternative transcripts): NM_001503.2 NM_177483.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001503 NM_177483
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001503                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001503                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001503  
Additional cDNA sequence: AJ308108.1 AK308639.1 AK310692.1 AY007546.2 BC007614.1 BC020748.1 BC093645.1 BC112001.1 CR593011.1 L11702.1
10 DOTS entries : DT.95089672 DT.95103805 DT.92432297 DT.115600 DT.413838 DT.92432302 DT.40257315 DT.100791420 DT.121374255 DT.431855
24/84 AceView cDNA sequences (see all 84
):AA012836 NM_177483 NM_001503 BM909421 AA001930 AA211064 CA391396 CR593011 BX105085 AY007546 BQ059617 AI298868 BC007614 AJ308108 AI300016 BQ066223 AI797022 BE674158 BM458510 BV200256 BG562713 CD244981 BE468248 BQ642460
highest scoring ESTs for GPLD1 :L11702 AA001730 AI040379 AJ308108 AY007546 BC020748 BG565942 AA001930 AA012836 AA211064
Unigene Cluster for GPLD1: Glycosylphosphatidylinositol specific phospholipase D1 Hs.533291 [show with all ESTs ] Unigene Representative Sequence: NM_001503 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for GPLD1 ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19 ^ 20 ^ SP1 :                 -   -                     -               SP2 :                                                     SP3 :       -                                               SP4 :                                                    
ExUns: 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 SP1 :             SP2 :             SP3 :             SP4 :            
About this scheme ECgene alternative splicing isoforms for GPLD1 2 Ensembl transcripts including schematic representations : ENST00000230036
ENST00000378243
Expression for GPLD1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GPLD1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GPLD1 1 / 2 / 3
14 probe-sets matching GPLD1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.533291 Expression variation in blood from EXPOLDB for GPLD1
Orthologs for GPLD1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GPLD1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for GPLD1 ENSEMBL Gene Tree for GPLD1 Paralogs for GPLD1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for GPLD1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GPLD1 (up to first 250kb)
Disorders & Mutations for GPLD1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602515 8 Novoseek disease relationships for GPLD1 gene
About this table
Medical News for GPLD1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GPLD1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/99 PubMed articles for GPLD1 gene (see all 99
): Structure and expression of the human glycosylphosphatidylinositol phospholipase D1 (GPLD1) gene. (PubMed id 11072085) 1, 2, 3, 4 Schofield J.N. and Rademacher T.W. (2000) Phosphatidylinositol-glycan-specific phospholipase D is an amphiphilic glycoprotein that in serum is associated with high-density lipoproteins. (PubMed id 1606959) 1, 3, 4 Hoener M.C. and Brodbeck U. (1992) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 3, 4 Liu T.... Smith R.D. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404) 3, 4 Mungall A.J.... Beck S. (2003) Phosphorylation decreases trypsin activation and apolipoprotein al binding to glycosylphosphatidylinositol-specific phospholipase D. (PubMed id 11989719) 1, 3 Deeg M.A. and Bowen R.F. (2002) GPI-specific phospholipase D associates with an apoA-I- and apoA-IV-containing complex. (PubMed id 11254757) 1, 3 Deeg M.A....Cheung M.C. (2001) Role of glycosylphosphatidylinositol-specific phospholipase D in the homing of umbilical cord blood, mobilized peripheral blood and bone marrow-derived hematopoietic stem/progenitor cells. (PubMed id 17467053) 1, 3 Song K....Chen F. (2007) Release of GPI-anchored membrane proteins by a cell-associated GPI-specific phospholipase D. (PubMed id 7512501) 1, 3 Metz C.N....Davitz M.A. (1994) [Preliminary study of the gene structure of human glycosylphosphatidylinositol specific phospholipase D] (PubMed id 12536633) 1, 3 Tang J.H....Zhang X.J. (2001)
Search for GPLD1
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Genome Databases showing GPLD1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GPLD1
(According to HUGE )
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Specialized Databases showing GPLD1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GPLD1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GPLD1:
Search Tocris compounds for GPLD1
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