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GPKOW Gene

protein-coding   GIFtS: 50
GCID: GC0XM048970

G Patch Domain And KOW Motifs

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
G Patch Domain And KOW Motifs1 2     G Patch Domain Containing 51
Protein MOS2 Homolog2 3     Spp22
GPATC52 3     G Patch Domain And KOW Motifs-Containing Protein2
GPATCH52 3     G Patch Domain-Containing Protein 53
T542 3     Protein T543

External Ids:    HGNC: 306771   Entrez Gene: 272382   Ensembl: ENSG000000683947   UniProtKB: Q929173   

Export aliases for GPKOW gene to outside databases

Previous GC identifers: GC0XM047997 GC0XM048726 GC0XM048857 GC0XM046625


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for GPKOW Gene:
This gene encodes a putative RNA-binding protein containing G-patch and KOW (Kyprides, Ouzounis, Woese) domains.
The encoded protein interacts directly with protein kinase A and protein kinase X and is also found associated
with the spliceosome. (provided by RefSeq, Aug 2013)

GeneCards Summary for GPKOW Gene:
GPKOW (G patch domain and KOW motifs) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000023.10  NC_018934.2  NT_079573.5  
Regulatory elements:
   Regulatory transcription factor binding sites in the GPKOW gene promoter:
         Elk-1   Tal-1   AML1a   GATA-3   RelA   NF-kappaB   YY1   E47   ZID   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidGPKOW promoter sequence
   Search Chromatin IP Primers for GPKOW

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat GPKOW


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: Xp11.23   Ensembl cytogenetic band:  Xp11.23   HGNC cytogenetic band: Xp11.23

GPKOW Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GPKOW gene location

GeneLoc information about chromosome X         GeneLoc Exon Structure

GeneLoc location for GC0XM048970:  view genomic region     (about GC identifiers)

Start:
48,969,022 bp from pter      End:
48,980,151 bp from pter
Size:
11,130 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: GPKOW_HUMAN, Q92917 (See protein sequence)
Recommended Name: G patch domain and KOW motifs-containing protein  
Size: 476 amino acids; 52229 Da
Subunit: Interacts with PRKX
Sequence caution: Sequence=AAB18640.1; Type=Frameshift; Positions=Several;
Secondary accessions: Q59EK5 Q9BQA8

Explore the universe of human proteins at neXtProt for GPKOW: NX_Q92917

Explore proteomics data for GPKOW at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys192, Lys299, Lys315, Lys372
  • Modification sites at PhosphoSitePlus

  • See GPKOW Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_056513.2  
    ENSEMBL proteins: 
     ENSP00000156109  

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    antibodies-online proteins for GPKOW (4 products) 

     
    antibodies-online peptides for GPKOW

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    GPATCH: G patch domain containing

    2 InterPro protein domains:
     IPR005824 KOW
     IPR000467 G_patch_dom

    Graphical View of Domain Structure for InterPro Entry Q92917

    ProtoNet protein and cluster: Q92917

    1 Blocks protein domain: IPB006646 KOW (Kyprides

    UniProtKB/Swiss-Prot: GPKOW_HUMAN, Q92917
    Similarity: Belongs to the MOS2 family
    Similarity: Contains 1 G-patch domain
    Similarity: Contains 2 KOW domains


    Find genes that share domains with GPKOW           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003676nucleic acid binding IEA--
    GO:0005515protein binding IPI16491121
         
    Find genes that share ontologies with GPKOW           About GenesLikeMe


    Phenotypes:
         5 GenomeRNAi human phenotypes for GPKOW:
     G0/1 arrest  Increased G1 DNA content  Increased HPV18 LCR reporter a  Increased cell size 
     Increased gamma-H2AX phosphory 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for GPKOW

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    Selected qRT-PCR Assays for microRNAs that regulate GPKOW (see all 10):
    hsa-miR-203 hsa-miR-1224-3p hsa-miR-522 hsa-miR-1260b hsa-miR-1260 hsa-miR-224* hsa-miR-382 hsa-miR-3654
    SwitchGear 3'UTR luciferase reporter plasmidGPKOW 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    GPKOW_HUMAN, Q92917: Nucleus (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    cytosol3
    endoplasmic reticulum1
    mitochondrion1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730NOT nucleolus IDA--

    Find genes that share ontologies with GPKOW           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for GPKOW
    Interactions:

        Search GeneGlobe Interaction Network for GPKOW

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for GPKOW (Q929171, 2, 3 ENSP000001561094) via UniProtKB, MINT, STRING, and/or I2D (see all 35)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    BUD13Q9BRD01, 2, ENSP000002602104EBI-746309,EBI-2561235 MINT-8337376 MINT-8331547 STRING: ENSP00000260210
    PRPF4O431721, 2, ENSP000003633134EBI-746309,EBI-718395 MINT-8336496 MINT-8331745 STRING: ENSP00000363313
    PRPF8Q6P2Q91, 2, ENSP000003043504EBI-746309,EBI-538479 MINT-8336056 MINT-8331877 STRING: ENSP00000304350
    NINLQ9Y2I62, 3, ENSP000002788864MINT-66821 I2D: score=5 STRING: ENSP00000278886
    DHX16O602311, 2EBI-746309,EBI-311446 MINT-8337662 MINT-8331646
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with GPKOW           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for GPKOW



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for GPKOW gene: 
    NM_015698.5  

    Unigene Cluster for GPKOW:

    G patch domain and KOW motifs
    Hs.503666  [show with all ESTs]
    Unigene Representative Sequence: NM_015698
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000156109(uc004dmr.3)
    miRNA
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    hsa-miR-203 hsa-miR-1224-3p hsa-miR-522 hsa-miR-1260b hsa-miR-1260 hsa-miR-224* hsa-miR-382 hsa-miR-3654
    SwitchGear 3'UTR luciferase reporter plasmidGPKOW 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat GPKOW
      QuantiFast Probe-based Assays in human, mouse, rat GPKOW

    Additional mRNA sequence: 

    AB209806.1 BC000397.2 BC003148.1 U66359.1 

    6 DOTS entries:

    DT.414038  DT.92439717  DT.40127266  DT.75135273  DT.86846319  DT.100793452 

    Selected AceView cDNA sequences (see all 252):

    BQ669176 BI820804 CR619819 AL526273 BM764683 CA428345 CB161020 CA309452 
    BM470226 BI913231 BM561017 CR607315 AI692852 BE382627 BU855613 BU844472 
    CB159894 BF439135 CR613138 AA971581 BQ896643 CR592275 BQ014756 BM468480 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    GPKOW expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGACTCCTCC
    GPKOW Expression
    About this image


    GPKOW expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 7) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Ovary (Reproductive System)    fully expand to see all 2 entries
             Ovarian Mesenchymal Stroma Cells Ovary Interstitium
             Oviduct
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Pancreas (Endocrine System)
             Islets of Langerhans
     
     Testis (Reproductive System)
             Leydig Cells Testis Interstitium
    GPKOW Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    GPKOW Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.503666
        Custom PCR Arrays for GPKOW
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for GPKOW gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Gpkow1 , 5 G patch domain and KOW motifs1, 5 80.23(n)1
    76.87(a)1
      X (3.47 cM)5
    2094161  NM_173747.31  NP_776108.21 
     76971315 
    lizard
    (Anolis carolinensis)
    Reptilia GPKOW6
    G patch domain and KOW motifs
    49(a)
    1 ↔ 1
    GL343326.1(778191-791467)
    African clawed frog
    (Xenopus laevis)
    Amphibia CD328700.12   -- 74.46(n)    CD328700.1 
    zebrafish
    (Danio rerio)
    Actinopterygii mpzf637-1-0016552 mpzf637-1-001655 74.52(n)   387023  CK363436.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG103246
    --
    19(a)
    1 ↔ 1
    3R(12470794-12472726)
    worm
    (Caenorhabditis elegans)
    Secernentea R11A8.21 R11A8.2 41.14(n)
    32.44(a)
      177923  NM_069509.1  NP_501910.1 


    ENSEMBL Gene Tree for GPKOW (if available)
    TreeFam Gene Tree for GPKOW (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for GPKOW (see all 244)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr X posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1838288541,2
    --48888126(+) CAATAC/TAGTGA 1 -- ds50010--------
    rs2011202171,2
    --48888169(+) TATTT-/AAAAAA 1 -- ds50010--------
    rs1896635671,2
    --48888170(+) TATTTA/TAAAAA 1 -- ds50010--------
    rs78832751,2
    C,F--48888177(+) aaaaaA/Tttttt 1 -- ds50013Minor allele frequency- T:0.40NA WA CSA 5
    rs1868260091,2
    --48888535(+) ACTGCC/TGCAAG 1 -- ds50010--------
    rs1445563381,2
    C--48888589(+) AACACC/TGCACA 1 -- ds50010--------
    rs1915100491,2
    --48888921(+) TGGCAC/TGGGGA 1 -- ut310--------
    rs1493966511,2
    C--48889059(+) GAGAA-/AGGAGGAG 1 -- cds10--------
    rs1477665791,2
    --48889106(+) GAAATA/GGACTA 1 -- ut310--------
    rs1816184881,2
    --48889308(+) GAGGAA/GGACCC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for GPKOW (48969022 - 48980151 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for GPKOW:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv1526582CNV Insertion17803354
    nsv528292CNV Gain19592680
    esv32909CNV Gain+Loss17666407
    nsv204OTHER Inversion15895083
    nsv7442OTHER Inversion18451855

    Locus Specific Mutation Databases (LSDB): GPKOW

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for GPKOW gene, integrated from 10 sources (see all 28):
    (articles sorted by number of sources associating them with GPKOW)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Dynamic protein-protein interaction wiring of the human spliceosome. (PubMed id 22365833)1, 3 Hegele A....Stelzl U. (Mol. Cell 2012)
    2. G-patch domain and KOW motifs-containing protein, GPKOW; a nuclear RNA-binding protein regulated by protein kinase A. (PubMed id 21880142)1, 3 Aksaas A.K....SkAYlhegg B.S. (J Mol Signal 2011)
    3. Smad6 is a protein kinase X phosphorylation substrate and is required for HL-60 cell differentiation. (PubMed id 16491121)1, 2 Glesne D. and Huberman E. (Oncogene 2006)
    4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (Cell 2006)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Long-range map of a 3.5-Mb region in Xp11.23-22 with a sequence-ready map from a 1.1-Mb gene-rich interval. (PubMed id 8938429)1, 2 Schindelhauer D.... Meindl A. (Genome Res. 1996)
    7. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PubMed id 23824909)1 Chen Y....Ge F. (amp 2013)
    8. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    9. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
    10. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 27238 HGNC: 30677 AceView: GPKOW Ensembl:ENSG00000068394 euGenes: HUgn27238
    ECgene: GPKOW H-InvDB: GPKOW

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for GPKOW Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for GPKOW gene:
    Search GeneIP for patents involving GPKOW

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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