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Aliases for GPD2 Gene

Aliases for GPD2 Gene

  • Glycerol-3-Phosphate Dehydrogenase 2 2 3 5
  • Glycerol-3-Phosphate Dehydrogenase 2 (Mitochondrial) 2 3
  • EC 1.1.5.3 4 63
  • GPDH-M 3 4
  • GPD-M 3 4
  • MtGPD 3 4
  • Mitochondrial Glycerophosphate Dehydrogenase 3
  • Testicular Tissue Protein Li 76 3
  • MGPDH 3
  • GDH2 3
  • GPDM 3

External Ids for GPD2 Gene

Previous GeneCards Identifiers for GPD2 Gene

  • GC02P155224
  • GC02P155821
  • GC02P157255
  • GC02P157495
  • GC02P157481
  • GC02P157118
  • GC02P156988
  • GC02P157291
  • GC02P149177

Summaries for GPD2 Gene

Entrez Gene Summary for GPD2 Gene

  • The protein encoded by this gene localizes to the inner mitochondrial membrane and catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate, using FAD as a cofactor. Along with GDP1, the encoded protein constitutes the glycerol phosphate shuttle, which reoxidizes NADH formed during glycolysis. Two transcript variants encoding the same protein have been found for this gene.[provided by RefSeq, Jan 2010]

GeneCards Summary for GPD2 Gene

GPD2 (Glycerol-3-Phosphate Dehydrogenase 2) is a Protein Coding gene. Diseases associated with GPD2 include Diabetes Mellitus, Noninsulin-Dependent and Methylmalonic Acidemia. Among its related pathways are glycerol degradation and Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha). GO annotations related to this gene include calcium ion binding and glycerol-3-phosphate dehydrogenase activity.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPD2 Gene

Genomics for GPD2 Gene

Regulatory Elements for GPD2 Gene

Enhancers for GPD2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around GPD2 on UCSC Golden Path with GeneCards custom track

Promoters for GPD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around GPD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for GPD2 Gene

Chromosome:
2
Start:
156,435,290 bp from pter
End:
156,613,735 bp from pter
Size:
178,446 bases
Orientation:
Plus strand

Genomic View for GPD2 Gene

Genes around GPD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GPD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GPD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPD2 Gene

Proteins for GPD2 Gene

  • Protein details for GPD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P43304-GPDM_HUMAN
    Recommended name:
    Glycerol-3-phosphate dehydrogenase, mitochondrial
    Protein Accession:
    P43304
    Secondary Accessions:
    • A8K4V0
    • B3KSA9
    • Q59FR1
    • Q9HAP9

    Protein attributes for GPD2 Gene

    Size:
    727 amino acids
    Molecular mass:
    80853 Da
    Cofactor:
    Name=FAD; Xref=ChEBI:CHEBI:57692;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAD92636.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for GPD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GPD2 Gene

Proteomics data for GPD2 Gene at MOPED

Post-translational modifications for GPD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains & Families for GPD2 Gene

Gene Families for GPD2 Gene

Suggested Antigen Peptide Sequences for GPD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P43304

UniProtKB/Swiss-Prot:

GPDM_HUMAN :
  • Contains 2 EF-hand domains.
  • Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
Domain:
  • Contains 2 EF-hand domains.
Family:
  • Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
genes like me logo Genes that share domains with GPD2: view

Function for GPD2 Gene

Molecular function for GPD2 Gene

GENATLAS Biochemistry:
glycerol-3-phosphate dehydrogenase,tightly linked to D2S141,FAD dependent,mitochondrial,intermembrane space predominantly expressed in islet cell
UniProtKB/Swiss-Prot CatalyticActivity:
sn-glycerol 3-phosphate + a quinone = glycerone phosphate + a quinol.
UniProtKB/Swiss-Prot EnzymeRegulation:
Calcium-binding enhance the activity of the enzyme.

Enzyme Numbers (IUBMB) for GPD2 Gene

Gene Ontology (GO) - Molecular Function for GPD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with GPD2: view
genes like me logo Genes that share phenotypes with GPD2: view

Animal Models for GPD2 Gene

MGI Knock Outs for GPD2:

Animal Model Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for GPD2 Gene

Localization for GPD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GPD2 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GPD2 Gene COMPARTMENTS Subcellular localization image for GPD2 gene
Compartment Confidence
mitochondrion 5
cytosol 1
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for GPD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with GPD2: view

Pathways & Interactions for GPD2 Gene

genes like me logo Genes that share pathways with GPD2: view

Pathways by source for GPD2 Gene

UniProtKB/Swiss-Prot P43304-GPDM_HUMAN

  • Pathway: Polyol metabolism; glycerol degradation via glycerol kinase pathway; glycerone phosphate from sn-glycerol 3-phosphate (anaerobic route): step 1/1.

Gene Ontology (GO) - Biological Process for GPD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035264 multicellular organism growth IEA --
GO:0044255 cellular lipid metabolic process TAS --
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with GPD2: view

No data available for SIGNOR curated interactions for GPD2 Gene

Drugs & Compounds for GPD2 Gene

(4) Drugs for GPD2 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
FAD Approved Pharma 0
calcium Nutra 0

(11) Additional Compounds for GPD2 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
glycerol 3-phosphate
  • 1-(Dihydrogen phosphate) Glycerol
  • 1-Glycerophosphate
  • 1-Glycerophosphorate
  • 1-Glycerophosphoric acid
  • 3-Glycerophosphate
57-03-4
Dihydroxyacetone phosphate
  • 1,3-Dihydroxy-2-Propanone mono(dihydrogen phosphate)
  • 1,3-Dihydroxy-2-propanone phosphate
  • 1,3-Dihydroxyacetone 1-phosphate
  • 1-Hydroxy-3-(phosphonooxy)-2-Propanone
  • 1-Hydroxy-3-(phosphonooxy)acetone
57-04-5
FADH
  • 1,5-Dihydro-FAD
  • 1,5-Dihydro-P-5-ester with adenosine
  • 1,5-Dihydro-Riboflavin 5'-(trihydrogen diphosphate) P'->5'-ester with adenosine
  • Adenosine 5'-(trihydrogen pyrophosphate), 5'-5'-ester with 5,10-dihydro-7,8-dimethyl-10-(D-ribo-2,3,4,5-tetrahydroxypentyl)alloxazine
  • Adenosine 5'-(trihydrogen pyrophosphate), 5'->5'-ester with 5,10-dihydro-7,8-dimethyl-10-(D-ribo-2,3,4,5-tetrahydroxypentyl)alloxazine
1910-41-4
genes like me logo Genes that share compounds with GPD2: view

Transcripts for GPD2 Gene

Unigene Clusters for GPD2 Gene

Glycerol-3-phosphate dehydrogenase 2 (mitochondrial):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GPD2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20
SP1:
SP2: - - -
SP3: - -
SP4: - - - - - - -

Relevant External Links for GPD2 Gene

GeneLoc Exon Structure for
GPD2
ECgene alternative splicing isoforms for
GPD2

Expression for GPD2 Gene

mRNA expression in normal human tissues for GPD2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for GPD2 Gene

This gene is overexpressed in Nasal epithelium (35.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for GPD2 Gene



SOURCE GeneReport for Unigene cluster for GPD2 Gene Hs.512382

genes like me logo Genes that share expression patterns with GPD2: view

Protein tissue co-expression partners for GPD2 Gene

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GPD2 Gene

Orthologs for GPD2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GPD2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GPD2 35
  • 92.16 (n)
  • 97.11 (a)
GPD2 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GPD2 35
  • 91.18 (n)
  • 94.96 (a)
GPD2 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gpd2 35
  • 86.2 (n)
  • 93.26 (a)
Gpd2 16
Gpd2 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GPD2 35
  • 99.72 (n)
  • 100 (a)
GPD2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gpd2 35
  • 85.14 (n)
  • 91.61 (a)
oppossum
(Monodelphis domestica)
Mammalia GPD2 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPD2 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves GPD2 35
  • 77.99 (n)
  • 82.94 (a)
GPD2 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GPD2 36
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gpd2 35
  • 75.26 (n)
  • 83.31 (a)
Str.20311 35
zebrafish
(Danio rerio)
Actinopterygii gpd2 35
  • 71.47 (n)
  • 82.54 (a)
gpd2 36
  • 79 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta BG:DS08249.2 37
  • 37 (a)
CG2137 37
  • 42 (a)
Gpo-1 35
  • 59.5 (n)
  • 63.47 (a)
CG2137 36
  • 43 (a)
OneToMany
CG7311 36
  • 35 (a)
OneToMany
Gpo-1 36
  • 61 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004437 35
  • 59.17 (n)
  • 63.04 (a)
worm
(Caenorhabditis elegans)
Secernentea Y50E8A.6 37
  • 42 (a)
T25G3.4 35
  • 58.31 (n)
  • 58.68 (a)
T25G3.4 36
  • 57 (a)
OneToMany
Y50E8A.6 36
  • 44 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GUT2 36
  • 40 (a)
OneToOne
GUT2 38
thale cress
(Arabidopsis thaliana)
eudicotyledons SDP6 35
  • 53.38 (n)
  • 53.75 (a)
rice
(Oryza sativa)
Liliopsida Os04g0224900 35
  • 55.52 (n)
  • 51.97 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU05454 35
  • 56.96 (n)
  • 58.44 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 70 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
Species with no ortholog for GPD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GPD2 Gene

ENSEMBL:
Gene Tree for GPD2 (if available)
TreeFam:
Gene Tree for GPD2 (if available)

Paralogs for GPD2 Gene

(2) SIMAP similar genes for GPD2 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for GPD2 Gene

genes like me logo Genes that share paralogs with GPD2: view

No data available for Paralogs for GPD2 Gene

Variants for GPD2 Gene

Sequence variations from dbSNP and Humsavar for GPD2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1051916 - 156,570,184(+) AGTAC(A/G)TCTTG reference, missense
rs2116665 - 156,549,737(-) TCACA(C/T)GCACT reference, missense
rs35096779 - 156,569,419(-) AGTTT(G/T)GACAG reference, missense
rs487265 -- 156,524,067(-) agaag(C/T)cccaa intron-variant
rs507701 -- 156,439,901(-) GAATA(A/G)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GPD2 Gene

Variant ID Type Subtype PubMed ID
nsv2987 CNV Loss 18451855
esv2721009 CNV Deletion 23290073
esv2721010 CNV Deletion 23290073
esv1213858 CNV Deletion 17803354
esv2721011 CNV Deletion 23290073
esv2622933 CNV Deletion 19546169
esv2664126 CNV Deletion 23128226
esv2721012 CNV Deletion 23290073
nsv875326 CNV Loss 21882294
nsv214820 CNV Loss 16902084
nsv834431 CNV Loss 17160897

Variation tolerance for GPD2 Gene

Residual Variation Intolerance Score: 37% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.67; 57.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GPD2 Gene

Human Gene Mutation Database (HGMD)
GPD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GPD2 Gene

Disorders for GPD2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GPD2 Gene - From: OMIM, ClinVar, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
diabetes mellitus, noninsulin-dependent
  • diabetes mellitus, noninsulin-dependent, 2
methylmalonic acidemia
  • methylmalonic acidemia, cbla type
- elite association - COSMIC cancer census association via MalaCards
Search GPD2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for GPD2

Genetic Association Database (GAD)
GPD2
Human Genome Epidemiology (HuGE) Navigator
GPD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GPD2
genes like me logo Genes that share disorders with GPD2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GPD2 Gene

Publications for GPD2 Gene

  1. Mitochondrial glycerol-3-phosphate dehydrogenase. Cloning of an alternatively spliced human islet-cell cDNA, tissue distribution, physical mapping, and identification of a polymorphic genetic marker. (PMID: 8549872) Ferrer J. … Permutt M.A. (Diabetes 1996) 3 4 23 67
  2. Haploinsufficiency of the GPD2 gene in a patient with nonsyndromic mental retardation. (PMID: 19011903) Daoud H. … Briault S. (Hum. Genet. 2009) 3 23
  3. High activity of mitochondrial glycerophosphate dehydrogenase and glycerophosphate-dependent ROS production in prostate cancer cell lines. (PMID: 15967408) Chowdhury S.K. … Singh G. (Biochem. Biophys. Res. Commun. 2005) 3 23
  4. Germ cell nuclear factor relieves cAMP-response element modulator tau-mediated activation of the testis-specific promoter of human mitochondrial glycerol-3-phosphate dehydrogenase. (PMID: 15456763) Rajkovic M. … Weitzel J.M. (J. Biol. Chem. 2004) 3 23
  5. Structural organization and mapping of the human mitochondrial glycerol phosphate dehydrogenase-encoding gene and pseudogene. (PMID: 8682323) Brown L.J. … MacDonald M.J. (Gene 1996) 3 23

Products for GPD2 Gene

Sources for GPD2 Gene

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