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Aliases & Descriptions for GPC3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DGSX 1, 2 | | GTR2-2 3 | | MXR7 3 | | OCI-5 1, 2 | | OCI5 3 | | OTTHUMP00000024058 2 | | OTTHUMP00000062492 2 | | SDYS 2, 5 | | SGB 1, 2 | | SGBS 1, 2 | | SGBS1 1, 2, 5 |
| | | Descriptions |
|---|
| Intestinal protein OCI-5 3 | | glypican 3 2 | | glypican proteoglycan 3 2 |
|
| | Search outside databases for aliases for GPC3 genePrevious GC identifers: GC0XM127315 GC0XM129515 GC0XM130614 GC0XM131375 GC0XM132395 |
Summaries for GPC3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GPC3: Cell surface heparan sulfate proteoglycans are composed of a membrane-associated protein core substituted with a variable number of heparan sulfate chains. Members of the glypican-related integral membrane proteoglycan family (GRIPS) contain a core protein anchored to the cytoplasmic membrane via a glycosyl phosphatidylinositol linkage. These proteins may play a role in the control of cell division and growth regulation. Deletion mutations in this gene are associated with Simpson-Golabi-Behmel syndrome. [provided by RefSeq] UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654Function: Cell surface proteoglycan that bears heparan sulfate. May be involved in the suppression/modulation of growth in the predominantly mesodermal tissues and organs. May play a role in the modulation of IGF2 interactions with its receptor and thereby modulate its function. May regulate growth and tumor predispositionGene Wiki entry for GPC3 (Glypican_3) |
Genomic Location for GPC3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GPC3 gene 
Entrez Gene cytogenetic band: Xq26.1 Ensembl cytogenetic band: Xq26.2 HGNC cytogenetic band: Xq26GPC3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XM132497:
(about GC identifiers)
Start:
|
132,497,439 bp from pter |
End:
|
132,947,332 bp from pter |
Size:
|
449,894 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000023.9 NT_011786.15
| Proteins for GPC3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654 (See
protein sequence)Recommended Name: Glypican-3 precursor Size: 580 amino acids; 65563 Da
Subcellular location: Cell membrane; Lipid-anchor, GPI-anchor; Extracellular side (By similarity)
Subcellular location: Secreted glypican-3: Secreted, extracellular space (By similarity)REFSEQ proteins: NP_004475.1
ENSEMBL proteins: ENSP00000377836 ENSP00000359854 ENSP00000385307
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for GPC3: Assays for GPC3: | Protein
Domains/ Families for GPC3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P51654
ProtoNet protein and cluster: P51654 1 Blocks protein family: IPB001863 Glypican
UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654Similarity: Belongs to the glypican family | Gene Function for GPC3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004484
Applied Biosystems Silencer® siRNAs for GPC3
Sigma-Aldrich siRNA and siRNA Panels for GPC3  Sigma-Aldrich shRNA Panels and shRNA for GPC3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004484                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004484                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004484 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004484
UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654Function: Cell surface proteoglycan that bears heparan sulfate. May be involved in the suppression/modulation of growth in the predominantly mesodermal tissues and organs. May play a role in the modulation of IGF2 interactions with its receptor and thereby modulate its function. May regulate growth and tumor predispositionGenatlas biochemistry entry for GPC3:glypican 3,60kDa,putative extracellular proteoglycan,involved in growth control in embryonic mesodermal tissues,complexing with and putative modulator of IGF2,juxtaposed to GPC4,with tumor suppression activity15/17 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Gpc3) (see all 17
):
| Pathways & Interactions for GPC3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for GPC3 
5/17 Interacting proteins for GPC3 (ENSP000003598543) via UniProtKB, MINT, and/or STRING (see all 17
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0009653 | anatomical structure morphogenesis |
TAS | 8589713 | About this table
|
Drugs & Compounds for GPC3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for GPC3 3 Novoseek chemical compound relationships for GPC3 gene
About this table
|
Transcripts for GPC3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004484
Sigma-Aldrich siRNA and siRNA Panels for GPC3  Sigma-Aldrich shRNA Panels and shRNA for GPC3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004484 REFSEQ mRNAs for GPC3 gene: NM_004484.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004484               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004484                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004484                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004484  Additional cDNA sequence: AK222761.1 AK222766.1 AK300168.1 AK310196.1 AK310689.1 BC035972.1 CR593041.1 CR594389.1 CR600770.1 CR611970.1 CR620091.1 CR624507.1 DQ349136.1 DQ349137.1 DQ349138.1 L47125.1 L47176.1 U50410.1 Z37987.1 15 DOTS entries: DT.452188 DT.100884054 DT.100884058 DT.121306095 DT.95311297 DT.100026089 DT.91768760 DT.91768767 DT.95227507 DT.100697690 DT.100884069 DT.119635 DT.95311282 DT.100884067 DT.91768761 24/452 AceView cDNA sequences (see all 452
):NM_004484 BQ643589 AU131321 AI052443 AI076178 BM974181 AV686384 BI793159 AA971113 CR620091 BQ647204 L47176 BP374031 BX438697 BC035972 AA340731 Z37987 BU844616 AU117929 AU118103 CR600770 AA953049 CR611970 BI822082
highest scoring ESTs for GPC3:U50410 AU117929 AU118103 AU118820 AU131321 AU135370 AU136239 AU137963 AU138269 AV750925 Unigene Cluster for GPC3: Glypican 3 Hs.644108 [show with all ESTs]Unigene Representative Sequence: NM_004484
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000394299
ENST00000370818
ENST00000406757
|
Expression for GPC3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GPC3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GPC3
1 / 2 / 3 6 probe-sets matching GPC3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GATTTCTTTG
SOURCE GeneReport for Unigene cluster: Hs.644108
Expression variation in blood from EXPOLDB for GPC3 UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654Tissue specificity: Highly expressed in lung, liver and kidney |
Orthologs for GPC3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GPC3 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for GPC3
ENSEMBL Gene Tree for GPC3 | Paralogs for GPC3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GPC3 gene
- GPC52 GPC22
|
SNPs/Variants for GPC3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GPC3 (up to first 250kb)
|
Disorders & Mutations for GPC3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300037 disorders: 312870 194070 UniProtKB/Swiss-Prot: GPC3_HUMAN, P51654
Defects in GPC3 are the cause of Simpson-Golabi-Behmel syndrome (SGBS) [MIM:312870]; also known as Simpson dysmorphia syndrome (SDYS). SGBS is a condition characterized by pre- and postnatal overgrowth (gigantism) with visceral and skeletal anomalies10/39 Novoseek disease relationships for GPC3 gene (see all 39
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| perlman syndrome |
89.13 |
2 |
11477610 (1), 10814714 (1) |
| embryonal tumor |
78.39 |
4 |
11008203 (2), 7909248 (1), 16158429 (1) |
| beckwith-wiedemann syndrome |
74.32 |
5 |
12949968 (1), 11477610 (1), 10814714 (1) |
| gigantism |
69.23 |
3 |
7909248 (1), 9339360 (1), 10814714 (1) |
| hepatocellular carcinoma |
68.41 |
47 |
15920546 (5), 15623647 (3), 16024626 (2), 16698587 (2) (see all 24) |
| sotos syndrome |
66.70 |
1 |
11477610 (1) |
| nipples, supernumerary |
64.27 |
1 |
11477610 (1) |
| wilms tumor |
60.51 |
16 |
12949968 (5), 11878776 (3), 11008203 (2), 17350117 (1) (see all 6) |
| adenoma hepatocellular |
60.41 |
5 |
18976006 (2), 16949914 (1), 15920546 (1), 9371521 (1) |
| mesothelioma |
60.28 |
8 |
11320054 (1), 18404367 (1), 15537637 (1), 11704870 (1) (see all 5) |
About this table
GeneTests: GPC3 Simpson-Golabi-Behmel Syndrome Human Gene Mutation Database: GPC3
|
Medical News for GPC3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GPC3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/129 PubMed articles for GPC3 gene (see all 129
):- Mutations in GPC3, a glypican gene, cause the Simpson-Golabi-Behmel overgrowth syndrome. (PubMed id 8589713)1, 2, 3, 4 Pilia G.... Schlessinger D. (1996)
- Mutational analysis of the GPC3/GPC4 glypican gene cluster on Xq26 in patients with Simpson-Golabi-Behmel syndrome: identification of loss- of-function mutations in the GPC3 gene. (PubMed id 10814714)1, 3, 4 Veugelers M.... David G. (2000)
- GPC4, the gene for human K-glypican, flanks GPC3 on xq26: deletion of the GPC3-GPC4 gene cluster in one family with Simpson-Golabi-Behmel syndrome. (PubMed id 9787072)1, 2, 3 Veugelers M....David G. (1998)
- Analysis of exon/intron structure and 400 kb of genomic sequence surrounding the 5'-promoter and 3'-terminal ends of the human glypican 3 (GPC3) gene. (PubMed id 9339360)1, 3, 4 Huber R.... Pilia G. (1997)
- Cloning and characterization of human cDNAs encoding a protein with high homology to rat intestinal development protein OCI-5. (PubMed id 9133586)1, 3, 4 Lage H. and Dietel M. (1997)
- Mapping of the Simpson-Golabi-Behmel overgrowth syndrome gene (GPC3) to chromosome X in human and rat by fluorescence in situ hybridization. (PubMed id 9021160)1, 3, 4 Shen T....Testa J.R. (1997)
- The DNA sequence of the human X chromosome. (PubMed id 15772651)3, 4 Ross M.T.... Bentley D.R. (2005)
- Oncofetal protein glypican-3 distinguishes yolk sac tumor from clear cell carcinoma of the ovary. (PubMed id 18277882)1, 3 Esheba G.E....Longacre T.A. (2008)
- Expression pattern of glypican-3 (GPC3) during human embryonic and fetal development. (PubMed id 18785116)1, 3 Iglesias B.V....de Kier Joffe E.B. (2008)
- The Simpson-Golabi-Behmel syndrome causative glypican-3, binds to and inhibits the dipeptidyl peptidase activity of CD26. (PubMed id 17549790)1, 3 Davoodi J....MacKenzie A.E. (2007)
|
Search for GPC3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GPC3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GPC3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GPC3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GPC3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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Incremental update: 13 Oct 2009
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