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Aliases for GPATCH2L Gene

Aliases for GPATCH2L Gene

  • G Patch Domain Containing 2-Like 2 3
  • C14orf118 3 4
  • G Patch Domain-Containing Protein 2-Like 3
  • Chromosome 14 Open Reading Frame 118 2
  • KIAA1152 4

External Ids for GPATCH2L Gene

Previous HGNC Symbols for GPATCH2L Gene

  • C14orf118

Previous GeneCards Identifiers for GPATCH2L Gene

  • GC14P076619

Summaries for GPATCH2L Gene

GeneCards Summary for GPATCH2L Gene

GPATCH2L (G Patch Domain Containing 2-Like) is a Protein Coding gene. An important paralog of this gene is GPATCH2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GPATCH2L Gene

Genomics for GPATCH2L Gene

Genomic Location for GPATCH2L Gene

Start:
76,151,885 bp from pter
End:
76,254,342 bp from pter
Size:
102,458 bases
Orientation:
Plus strand

Genomic View for GPATCH2L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GPATCH2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GPATCH2L Gene

No data available for Regulatory Elements for GPATCH2L Gene

Proteins for GPATCH2L Gene

  • Protein details for GPATCH2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWQ4-GPT2L_HUMAN
    Recommended name:
    G patch domain-containing protein 2-like
    Protein Accession:
    Q9NWQ4
    Secondary Accessions:
    • B3KN42
    • Q6PEJ7
    • Q9H3M3
    • Q9NWH0
    • Q9ULR8

    Protein attributes for GPATCH2L Gene

    Size:
    482 amino acids
    Molecular mass:
    54260 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA86466.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=BAA91325.1; Type=Frameshift; Positions=344; Evidence={ECO:0000305}; Sequence=BAA91411.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for GPATCH2L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GPATCH2L Gene

Proteomics data for GPATCH2L Gene at MOPED

Post-translational modifications for GPATCH2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GPATCH2L Gene

Domains for GPATCH2L Gene

Protein Domains for GPATCH2L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GPATCH2L: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GPATCH2L Gene

Function for GPATCH2L Gene

Gene Ontology (GO) - Molecular Function for GPATCH2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23455924
genes like me logo Genes that share ontologies with GPATCH2L: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GPATCH2L

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for GPATCH2L Gene

Localization for GPATCH2L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GPATCH2L Gene

Pathways for GPATCH2L Gene

SuperPathways for GPATCH2L Gene

No Data Available

Gene Ontology (GO) - Biological Process for GPATCH2L Gene

None

No data available for Pathways by source for GPATCH2L Gene

Transcripts for GPATCH2L Gene

Unigene Clusters for GPATCH2L Gene

G patch domain containing 2-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GPATCH2L

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GPATCH2L Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a ·
SP1: - - - -
SP2: - - - - - - -
SP3: - - -
SP4: - - - - -
SP5: - - - -
SP6: -
SP7: - -
SP8:
SP9:

ExUns: 15b · 15c · 15d
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:

Relevant External Links for GPATCH2L Gene

GeneLoc Exon Structure for
GPATCH2L
ECgene alternative splicing isoforms for
GPATCH2L

Expression for GPATCH2L Gene

mRNA expression in normal human tissues for GPATCH2L Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for GPATCH2L Gene

SOURCE GeneReport for Unigene cluster for GPATCH2L Gene Hs.410231

genes like me logo Genes that share expressions with GPATCH2L: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GPATCH2L Gene

Orthologs for GPATCH2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for GPATCH2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C14H14orf118 35
  • 99.93 (n)
  • 100 (a)
C14H14orf118 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GPATCH2L 35
  • 92.49 (n)
  • 98.12 (a)
MGC166084 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GPATCH2L 35
  • 92.48 (n)
  • 94.78 (a)
GPATCH2L 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gpatch2l 35
  • 85.42 (n)
  • 87.9 (a)
Gpatch2l 16
Gpatch2l 36
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GPATCH2L 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GPATCH2L 36
  • 63 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gpatch2l 35
  • 86.77 (n)
  • 88.32 (a)
chicken
(Gallus gallus)
Aves C5H14ORF118 35
  • 77.92 (n)
  • 85.12 (a)
GPATCH2L 36
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GPATCH2L 36
  • 76 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 24 (a)
OneToMany
Species with no ortholog for GPATCH2L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GPATCH2L Gene

ENSEMBL:
Gene Tree for GPATCH2L (if available)
TreeFam:
Gene Tree for GPATCH2L (if available)

Paralogs for GPATCH2L Gene

Paralogs for GPATCH2L Gene

Selected SIMAP similar genes for GPATCH2L Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with GPATCH2L: view

Variants for GPATCH2L Gene

Sequence variations from dbSNP and Humsavar for GPATCH2L Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs8799 -- 76,214,216(+) AAGAA(A/T)AGGAG intron-variant
rs14500 -- 76,177,785(+) CCTTC(C/T)TTGTC intron-variant
rs749074 -- 76,205,608(-) AAGGC(C/T)ATTAT utr-variant-3-prime, nc-transcript-variant, intron-variant
rs935336 -- 76,151,686(+) TGCAG(G/T)GGTCT upstream-variant-2KB
rs935337 -- 76,151,704(+) CGTGG(G/T)GCACC upstream-variant-2KB

Relevant External Links for GPATCH2L Gene

HapMap Linkage Disequilibrium report
GPATCH2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GPATCH2L Gene

Disorders for GPATCH2L Gene

No disorders were found for GPATCH2L Gene.

No data available for UniProtKB/Swiss-Prot for GPATCH2L Gene

Publications for GPATCH2L Gene

  1. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PMID: 10574461) Hirosawa M. … Ohara O. (DNA Res. 1999) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 3

Products for GPATCH2L Gene

Sources for GPATCH2L Gene

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