GP6 Gene
protein-coding GIFtS : 62
GCID: GC19 M055525
glycoprotein VI (platelet)
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Aliasesfor GP6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Glycoprotein VI (Platelet) 1 2 BDPLT112 GPVI1 2 3 Platelet Collagen Receptor2 Glycoprotein 62 3 Platelet Glycoprotein VI2 GPIV2 5
Export aliases for GP6 gene to outside databases Previous GC identifers: GC19M056387 GC19M055949 GC19M060201 GC19M060216 GC19M051846
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Summariesfor GP6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for GP6 : This gene encodes a platelet membrane glycoprotein of the immunoglobulin superfamily. The encoded protein is a receptor for collagen and plays a critical role in collagen-induced platelet aggregation and thrombus formation. The encoded protein forms a complex with the Fc receptor gamma-chain that initiates the platelet activation signaling cascade upon collagen binding. Mutations in this gene are a cause of platelet-type bleeding disorder-11 (BDPLT11). Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. (provided by RefSeq, Dec 2011) UniProtKB/Swiss-Prot: GPVI_HUMAN, Q9HCN6 Function : Collagen receptor involved in collagen-induced platelet adhesion and activation. Plays a key role in plateletprocoagulant activity and subsequent thrombin and fibrin formation. This procoagulant function may contribute to arterial and venous thrombus formation. The signaling pathway involves the FcR gamma-chain, the Src kinases (likely Fyn/Lyn), the adapter protein LAT and leads to the activation of phospholipase C gamma2 Gene Wiki entry for GP6 (GPVI)
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Genomic Viewsfor GP6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000019.9 NC_018930.1 NT_011109.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GP6 gene promoter: HOXA9B HOXA9 Sp1 NRSF form 1 AP-4 NRSF form 2 GATA-1 Meis-1a Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for GP6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GP6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 19q13.4 Ensembl cytogenetic band: 19q13.42 HGNC cytogenetic band: 19q13.4 GP6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M055525: view genomic region
(about GC identifiers )
Start:
55,525,073 bp from pter
End:
55,549,632 bp from pter
Size:
24,560 bases
Orientation:
minus strand
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Proteinsfor GP6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: GPVI_HUMAN, Q9HCN6 (See
protein sequence )Recommended Name: Platelet glycoprotein VI precursor Size : 339 amino acids; 36866 Da
Subunit : Associated with Fc receptor gamma chain. The GPVI-FcRgamma complex is associated with the Src kinase familyFyn and Lyn
Subcellular location : Isoform 1: Cell membrane; Single-pass membrane protein
Subcellular location : Isoform 2: Cell membrane; Single-pass membrane protein
1 PDB 3D structure from and Proteopedia for GP6 :2GI7 (3D)
 
Secondary accessions : Q9HCN7 Q9UIF2Alternative splicing : 3 isoforms : Q9HCN6-1 Q9HCN6-2 Q9HCN6-3 (Has no transmembrane domain. Does not interact with Fc receptor gamma chain. Does not bind to collagen-like peptides. Ref.1 (BAB12247) sequence is in conflict in positions: 314:P->A, 323:K->T, 573:R->G, 606:F->L)Explore the universe of human proteins at neXtProt for GP6: NX_Q9HCN6 Post-translational modifications:
N-linked glycosylation at Asn-92 is not required for the cell surface expression, but contributes to maximal adhesion to type I collagen, collagen-related peptide (CRP), and, to a lesser extent, to the snake venom C-type lectin convulxin (CVX)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9HCN6 GP6 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (3 alternative transcripts):
NP_001077368.1 NP_001242946.1 NP_057447.4 ENSEMBL proteins: ENSP00000394922 ENSP00000308782 ENSP00000334552 ENSP00000464922 Reactome Protein details: Q9HCN6 Human Recombinant Protein Products for GP6: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005886 plasma membrane
TAS -- GO:0005887 integral to plasma membrane
IEA --
GP6 for ontologies About GeneDecksing GP6 Antibody Products: Assay Products for GP6:
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Protein
Domains / Familiesfor GP6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GP6 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9HCN6 ProtoNet protein and cluster: Q9HCN6
1 Blocks protein family : IPB003599 Immunoglobulin subtype UniProtKB/Swiss-Prot: GPVI_HUMAN, Q9HCN6 Similarity : Contains 2 Ig-like C2-type (immunoglobulin-like) domains
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Functionfor GP6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: GPVI_HUMAN, Q9HCN6 Function : Collagen receptor involved in collagen-induced platelet adhesion and activation. Plays a key role in plateletprocoagulant activity and subsequent thrombin and fibrin formation. This procoagulant function may contribute to arterial and venous thrombus formation. The signaling pathway involves the FcR gamma-chain, the Src kinases (likely Fyn/Lyn), the adapter protein LAT and leads to the activation of phospholipase C gamma2
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
GP6 for ontologies About GeneDecksing Phenotypes: 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Gp6) :
GP6 for phenotypes About GeneDecksing Animal Models: Mouse knock-out Gp6 tm1Ware for GP6Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GP6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GP6 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): GP6 (NM_016363 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GP6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GP6
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GP6
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Pathways & Interactionsfor GP6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/7 super-pathways (see all 7 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Platelet activation, signaling and aggregation 2 GPVI-mediated activation cascade 3 Platelet Aggregation Inhibitor Pathway, Pharmacodynamics 4 ECM-receptor interaction 5 Cell surface interactions at the vascular wall
Pathway sources See GeneCards unified pathways Show all pathways 1 R&D Systems Pathway for GP6 5/6
Reactome Pathways for GP6 (see all 6 )1 PharmGKB Pathway for GP6 1
Kegg Pathway (Kegg details for GP6) :
GP6 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GP6 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/46 Interacting proteins for GP6 (Q9HCN6 1 , 2 , 3 ENSP00000308782 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 46 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
GP6 for ontologies About GeneDecksing
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Drugs & Compoundsfor GP6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
GP6 for compounds About GeneDecksing Browse Tocris compounds for GP6 10/30 Novoseek chemical compound relationships for GP6 gene (see all 30 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
convulxin
97.6
101
12881531 (5), 9341142 (4), 16014566 (3), 10666318 (3) (see all 43 )
lotrafiban
80.5
1
15370101 (1)
jararhagin
74.1
12
10666318 (3), 10727949 (1), 15320694 (1)
echicetin
71.9
2
15320694 (1)
adp
71.7
26
15939050 (3), 15231520 (2), 17096705 (2), 12842985 (1) (see all 17 )
tyrosine
64
56
14656219 (4), 9295288 (2), 10666318 (2), 20040043 (2) (see all 30 )
thromboxane a2
63.9
7
9468482 (2), 17362227 (1), 11964287 (1), 10066433 (1) (see all 5 )
fibrinogen
62
12
15934989 (1), 11722284 (1), 15231520 (1), 11964287 (1) (see all 9 )
go 6976
48
1
15583006 (1)
ristocetin
44.5
1
17539777 (1)
Search CenterWatch for drugs/clinical trials and news about GP6 / GPVI
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Transcriptsfor GP6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for GP6 gene (3 alternative transcripts): NM_001083899.1 NM_001256017.1 NM_016363.4 Unigene Cluster for GP6:
Glycoprotein VI (platelet) Hs.661752 [show with all ESTs ] Unigene Representative Sequence: NM_001083899 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000417454 (uc002qik.3 ) ENST00000310373 (uc002qil.3 ) ENST00000333884 (uc010esq.3 )ENST00000465648 ENST00000468239 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GP6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GP6 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): GP6 (NM_016363 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GP6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GP6
Additional cDNA sequence: AB035073.1 AB043819.1 AB043820.1 AB043821.1 BC069485.1 BC104832.1 BC111963.1
2 DOTS entries : DT.91715542 DT.91715543
24/29 AceView cDNA sequences (see all 29 ):
AB043820 BX283866 BF353861 BF204121 AA494446 BE294264 BC069485 AA308708 BF353841 BF353862 BF353858 BV189301 AB043819 NM_016363 AB043821 BF353843 BF353827 BF353837 BF353842 BF353812 BQ216894 AB035073 BF205319 BF353835 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for GP6 About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b SP1 :         -           SP2 :         -           SP3 :                  
ECgene alternative splicing isoforms for GP6
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Expression for GP6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GP6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TACTGCAATAAbout this image GP6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Brain Blood Brain Barrier Endothelial Cells Blood Brain Barrier, Endothelium Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See GP6 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for GP6 SOURCE GeneReport for Unigene cluster: Hs.661752 UniProtKB/Swiss-Prot: GPVI_HUMAN, Q9HCN6 Tissue specificity : Megakaryocytes and platelets SABiosciences Custom PCR Arrays for GP6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for GP6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat GP6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat GP6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat GP6 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GP6
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Orthologsfor GP6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for GP6 gene from 2/6 species (see all 6 ) About this table
ENSEMBL Gene Tree for GP6 (if available)TreeFam Gene Tree for GP6 (if available)
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Paralogsfor GP6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for GP6 gene KIR2DL4 2 LILRB4 2 LILRB1 2 LILRA6 2 IGSF1 2 LILRA5 2 KIR3DL1 2 OSCAR 2 NCR1 2 LILRA4 2 ENSG00000217792 2 TARM1 2 KIR3DX1 2 LILRA3 2 LILRB5 2 KIR3DL3 2 LILRA1 2 KIR2DL1 2 A1BG 2 LILRB2 2 KIR2DL2 2 LILRA2 2 KIR3DL2 2 KIR2DL3 2 FCAR 2 LILRB3 2 18/33 SIMAP similar genes for GP6 using alignment to 2 protein entries: GPVI_HUMAN (see all proteins )
(see all similar genes ):LILRB3 LAIR1 KIR-G1 LAIR2 p58 p140 KIR-K36 KIR-G2 KIR-K9 KIR-K15 KIR-K3 KIR-K78 KIR3DL1 KIR-K65 KIR-K64 FCAR KIR-K61 KIR3DX1
GP6 for paralogs About GeneDecksing
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Genomic Variantsfor GP6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 19 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More