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Aliases for GORAB Gene

Aliases for GORAB Gene

  • Golgin, RAB6-Interacting 2 3
  • N-Terminal Kinase-Like-Binding Protein 1 3 4
  • SCY1-Like 1 Binding Protein 1 2 3
  • SCY1-Like 1-Binding Protein 1 3 4
  • SCYL1-Binding Protein 1 3 4
  • NTKL-Binding Protein 1 3 4
  • SCYL1-BP1 3 4
  • HNTKL-BP1 3 4
  • SCYL1BP1 3 4
  • NTKLBP1 3 4
  • Gerodermia Osteodysplastica 2
  • NTKL-BP1 4
  • GO 3

External Ids for GORAB Gene

Previous HGNC Symbols for GORAB Gene

  • SCYL1BP1

Previous GeneCards Identifiers for GORAB Gene

  • GC01P168768
  • GC01P141724

Summaries for GORAB Gene

Entrez Gene Summary for GORAB Gene

  • This gene encodes a member of the golgin family, a group of coiled-coil proteins localized to the Golgi. The encoded protein may function in the secretory pathway. The encoded protein, which also localizes to the cytoplasm, was identified by interactions with the N-terminal kinase-like protein, and thus it may function in mitosis. Mutations in this gene have been associated with geroderma osteodysplastica. Alternatively spliced transcript variants have been described. [provided by RefSeq, Mar 2009]

GeneCards Summary for GORAB Gene

GORAB (Golgin, RAB6-Interacting) is a Protein Coding gene. Diseases associated with GORAB include geroderma osteodysplastica and geroderma osteodysplasticum.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GORAB Gene

Genomics for GORAB Gene

Regulatory Elements for GORAB Gene

Genomic Location for GORAB Gene

Chromosome:
1
Start:
170,532,122 bp from pter
End:
170,553,834 bp from pter
Size:
21,713 bases
Orientation:
Plus strand

Genomic View for GORAB Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GORAB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GORAB Gene

Proteins for GORAB Gene

  • Protein details for GORAB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T7V8-GORAB_HUMAN
    Recommended name:
    RAB6-interacting golgin
    Protein Accession:
    Q5T7V8
    Secondary Accessions:
    • Q49A22
    • Q6P1P9
    • Q9HAE6
    • Q9Y350

    Protein attributes for GORAB Gene

    Size:
    394 amino acids
    Molecular mass:
    44993 Da
    Quaternary structure:
    • Interacts with SCYL1 (By similarity). Interacts with RCHY1 and RAB6A/RAB6.

    Alternative splice isoforms for GORAB Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GORAB Gene

Proteomics data for GORAB Gene at MOPED

Post-translational modifications for GORAB Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GORAB Gene

No data available for DME Specific Peptides for GORAB Gene

Domains & Families for GORAB Gene

Protein Domains for GORAB Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GORAB Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T7V8

UniProtKB/Swiss-Prot:

GORAB_HUMAN :
  • Belongs to the GORAB family.
Family:
  • Belongs to the GORAB family.
genes like me logo Genes that share domains with GORAB: view

No data available for Gene Families for GORAB Gene

Function for GORAB Gene

Gene Ontology (GO) - Molecular Function for GORAB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 15781263
genes like me logo Genes that share ontologies with GORAB: view

Phenotypes for GORAB Gene

genes like me logo Genes that share phenotypes with GORAB: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GORAB

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for GORAB Gene

Localization for GORAB Gene

Subcellular locations from UniProtKB/Swiss-Prot for GORAB Gene

Cytoplasm. Golgi apparatus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GORAB Gene COMPARTMENTS Subcellular localization image for GORAB gene
Compartment Confidence
golgi apparatus 5
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for GORAB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm ISS --
GO:0005794 Golgi apparatus IDA --
genes like me logo Genes that share ontologies with GORAB: view

Pathways & Interactions for GORAB Gene

SuperPathways for GORAB Gene

No Data Available

Gene Ontology (GO) - Biological Process for GORAB Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GORAB Gene

Drugs & Compounds for GORAB Gene

No Compound Related Data Available

Transcripts for GORAB Gene

Unigene Clusters for GORAB Gene

Golgin, RAB6-interacting:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GORAB

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GORAB Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d ^ 7
SP1: -
SP2: - - -
SP3: -
SP4: - - - - -
SP5: - -
SP6: - -
SP7: - - -

Relevant External Links for GORAB Gene

GeneLoc Exon Structure for
GORAB
ECgene alternative splicing isoforms for
GORAB

Expression for GORAB Gene

mRNA expression in normal human tissues for GORAB Gene

Protein differential expression in normal tissues from HIPED for GORAB Gene

This gene is overexpressed in Testis (21.7), Placenta (19.1), Stomach (14.6), and Blymphocyte (11.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for GORAB Gene



SOURCE GeneReport for Unigene cluster for GORAB Gene Hs.183702

genes like me logo Genes that share expression patterns with GORAB: view

Protein tissue co-expression partners for GORAB Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GORAB Gene

Orthologs for GORAB Gene

This gene was present in the common ancestor of animals.

Orthologs for GORAB Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GORAB 35
  • 84.82 (n)
  • 82.2 (a)
GORAB 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GORAB 35
  • 84.66 (n)
  • 78.61 (a)
GORAB 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gorab 35
  • 79.98 (n)
  • 75.27 (a)
Gorab 16
Gorab 36
  • 75 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GORAB 35
  • 99.24 (n)
  • 98.48 (a)
GORAB 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gorab 35
  • 80.62 (n)
  • 74.73 (a)
oppossum
(Monodelphis domestica)
Mammalia GORAB 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GORAB 36
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves GORAB 35
  • 66.97 (n)
  • 65.15 (a)
GORAB 36
  • 58 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GORAB 36
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gorab 35
  • 60.77 (n)
  • 59 (a)
zebrafish
(Danio rerio)
Actinopterygii gorab 35
  • 58.4 (n)
  • 57.36 (a)
zgc64162 35
gorab 36
  • 42 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG33052 36
  • 22 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
OneToOne
Species with no ortholog for GORAB:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GORAB Gene

ENSEMBL:
Gene Tree for GORAB (if available)
TreeFam:
Gene Tree for GORAB (if available)

Paralogs for GORAB Gene

No data available for Paralogs for GORAB Gene

Variants for GORAB Gene

Sequence variations from dbSNP and Humsavar for GORAB Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs913257 - 170,552,235(+) TACAC(A/G/T)AACAA missense, reference, stop-gained, nc-transcript-variant
rs2150027 -- 170,535,285(+) TATTT(C/T)TTAAA intron-variant
rs2150028 -- 170,538,594(+) GATTA(A/G)AGCCT intron-variant
rs2183372 -- 170,534,878(+) GGAAT(A/G)TGATC intron-variant
rs2421325 -- 170,543,136(+) TGAGA(C/T)TCAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GORAB Gene

Variant ID Type Subtype PubMed ID
nsv872543 CNV Gain 21882294
nsv3476 CNV Insertion 18451855

Variation tolerance for GORAB Gene

Residual Variation Intolerance Score: 31.28% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.36; 26.85% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GORAB Gene

HapMap Linkage Disequilibrium report
GORAB
Human Gene Mutation Database (HGMD)
GORAB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GORAB Gene

Disorders for GORAB Gene

MalaCards: The human disease database

(3) MalaCards diseases for GORAB Gene - From: OMIM, ClinVar, GeneTests, Orphanet, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
geroderma osteodysplastica
  • geroderma osteodysplasticum
geroderma osteodysplasticum
  • geroderma osteodysplastica
hypercementosis
  • cementation hyperplasia
- elite association
Search GORAB in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

GORAB_HUMAN
  • Geroderma osteodysplasticum (GO) [MIM:231070]: A rare autosomal recessive disorder characterized by lax, wrinkled skin, joint laxity and a typical face with a prematurely aged appearance. Skeletal signs include severe osteoporosis leading to frequent fractures, malar and mandibular hypoplasia and a variable degree of growth retardation. {ECO:0000269 PubMed:18997784}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for GORAB

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GORAB
genes like me logo Genes that share disorders with GORAB: view

No data available for Genatlas for GORAB Gene

Publications for GORAB Gene

  1. Cloning and characterization of a novel gene which encodes a protein interacting with the mitosis-associated kinase-like protein NTKL. (PMID: 12783284) Di Y. … Huo K. (J. Hum. Genet. 2003) 2 23 67
  2. Gerodermia osteodysplastica is caused by mutations in SCYL1BP1, a Rab-6 interacting golgin. (PMID: 18997784) Hennies H.C. … Mundlos S. (Nat. Genet. 2008) 2 67
  3. A new human gene hNTKL-BP1 interacts with hPirh2. (PMID: 15781263) Zhang L. … Huo K. (Biochem. Biophys. Res. Commun. 2005) 2 67
  4. SCYL1BP1 has tumor-suppressive functions in human lung squamous carcinoma cells by regulating degradation of MDM2. (PMID: 25227860) Yang Z.P. … Wu W.X. (Asian Pac. J. Cancer Prev. 2014) 67
  5. Transcriptional profiling and dynamical regulation analysis identify potential kernel target genes of SCYL1-BP1 in HEK293T cells. (PMID: 25234469) Wang Y. … Huo K. (Mol. Cells 2014) 67

Products for GORAB Gene

Sources for GORAB Gene

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