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Aliases for GOLGA6L3 Gene

Aliases for GOLGA6L3 Gene

  • Golgin A6 Family-Like 3 2 3 5
  • Golgi Autoantigen, Golgin Subfamily A, 6-Like 3 2

External Ids for GOLGA6L3 Gene

Previous GeneCards Identifiers for GOLGA6L3 Gene

  • GC15P083588
  • GC15P085784

Summaries for GOLGA6L3 Gene

GeneCards Summary for GOLGA6L3 Gene

GOLGA6L3 (Golgin A6 Family-Like 3) is a Protein Coding gene. An important paralog of this gene is GOLGA6L9.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA6L3 Gene

Genomics for GOLGA6L3 Gene

Regulatory Elements for GOLGA6L3 Gene

Enhancers for GOLGA6L3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F084714 0.6 ENCODE 24.7 -524.4 -524449 3.4 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 GOLGA6L5P NMB UBE2Q2P1 GOLGA6L4 GOLGA6L3 WDR73 DNM1P51 SEC11A LINC00933 CSPG4P12
GH15F084979 0.2 ENCODE 14.5 -258.6 -258612 4.7 HDGF PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 GOLGA6L4 GOLGA6L5P UBE2Q2P1 LINC00933 ZNF592 CSPG4P12 GOLGA6L3 WDR73 CSPG4P11 ENSG00000259544
GH15F084746 1.1 FANTOM5 ENCODE 12.6 -491.6 -491551 5.2 HDGF CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF263 NMB GOLGA6L4 ENSG00000259270 GOLGA6L5P ZNF592 GOLGA6L3 DNM1P51 WDR73 EFTUD1P1 ENSG00000259683
GH15F084615 0.6 Ensembl ENCODE 12 -623.4 -623393 2.2 BCOR MTA2 TAL1 DPF2 ARID1B ZNF316 NCOR1 IKZF1 ZBTB33 NFE2 GOLGA6L4 GOLGA6L5P GOLGA6L3 ZNF592 LOC105370947 ENSG00000276278
GH15F084739 1 ENCODE 11.5 -499.5 -499502 1.9 PKNOX1 ZBTB17 GOLGA6L5P GOLGA6L3 ENSG00000259683 GC15P084740 GC15P084743
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around GOLGA6L3 on UCSC Golden Path with GeneCards custom track

Genomic Location for GOLGA6L3 Gene

Chromosome:
15
Start:
85,240,410 bp from pter
End:
85,247,187 bp from pter
Size:
6,778 bases
Orientation:
Plus strand

Genomic View for GOLGA6L3 Gene

Genes around GOLGA6L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA6L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA6L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA6L3 Gene

Proteins for GOLGA6L3 Gene

  • Protein details for GOLGA6L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEY3-GG6L3_HUMAN
    Recommended name:
    Putative golgin subfamily A member 6-like protein 3
    Protein Accession:
    A6NEY3

    Protein attributes for GOLGA6L3 Gene

    Size:
    463 amino acids
    Molecular mass:
    55643 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GOLGA6L3 Gene

Post-translational modifications for GOLGA6L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GOLGA6L3 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for GOLGA6L3 Gene

Domains & Families for GOLGA6L3 Gene

Protein Domains for GOLGA6L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GOLGA6L3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NEY3

UniProtKB/Swiss-Prot:

GG6L3_HUMAN :
  • Belongs to the GOLGA6 family.
Family:
  • Belongs to the GOLGA6 family.
genes like me logo Genes that share domains with GOLGA6L3: view

No data available for Gene Families for GOLGA6L3 Gene

Function for GOLGA6L3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA6L3 Gene

Localization for GOLGA6L3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GOLGA6L3 Gene COMPARTMENTS Subcellular localization image for GOLGA6L3 gene
Compartment Confidence
nucleus 3
golgi apparatus 2

Gene Ontology (GO) - Cellular Components for GOLGA6L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with GOLGA6L3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for GOLGA6L3 Gene

Pathways & Interactions for GOLGA6L3 Gene

SuperPathways for GOLGA6L3 Gene

No Data Available

Interacting Proteins for GOLGA6L3 Gene

Gene Ontology (GO) - Biological Process for GOLGA6L3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA6L3 Gene

Transcripts for GOLGA6L3 Gene

mRNA/cDNA for GOLGA6L3 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GOLGA6L3 Gene

Golgin A6 family-like 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA6L3 Gene

No ASD Table

Relevant External Links for GOLGA6L3 Gene

GeneLoc Exon Structure for
GOLGA6L3
ECgene alternative splicing isoforms for
GOLGA6L3

Expression for GOLGA6L3 Gene

mRNA expression in normal human tissues for GOLGA6L3 Gene

mRNA differential expression in normal tissues according to GTEx for GOLGA6L3 Gene

This gene is overexpressed in Testis (x6.0).

Protein differential expression in normal tissues from HIPED for GOLGA6L3 Gene

This gene is overexpressed in Pancreatic juice (44.0) and Peripheral blood mononuclear cells (25.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GOLGA6L3 Gene



Protein tissue co-expression partners for GOLGA6L3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GOLGA6L3 Gene:

GOLGA6L3

SOURCE GeneReport for Unigene cluster for GOLGA6L3 Gene:

Hs.454625
genes like me logo Genes that share expression patterns with GOLGA6L3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for GOLGA6L3 Gene

Orthologs for GOLGA6L3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for GOLGA6L3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC744787 34
  • 98.18 (n)
Species where no ortholog for GOLGA6L3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GOLGA6L3 Gene

ENSEMBL:
Gene Tree for GOLGA6L3 (if available)
TreeFam:
Gene Tree for GOLGA6L3 (if available)

Paralogs for GOLGA6L3 Gene

Paralogs for GOLGA6L3 Gene

(15) SIMAP similar genes for GOLGA6L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with GOLGA6L3: view

Variants for GOLGA6L3 Gene

Sequence variations from dbSNP and Humsavar for GOLGA6L3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs111305056 -- 85,245,830(+) CCTCC(A/G)GGGCA intron-variant
rs111829718 -- 85,238,456(+) GTAAA(A/C)TTTTG upstream-variant-2KB
rs112333068 -- 85,242,375(+) CAGGG(A/G)GCCCA intron-variant
rs112819031 -- 85,247,514(+) TAGCA(C/T)GCATA downstream-variant-500B
rs112917642 -- 85,241,076(+) CTCGG(A/G)CATCG intron-variant

Relevant External Links for GOLGA6L3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA6L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GOLGA6L3 Gene

Disorders for GOLGA6L3 Gene

Relevant External Links for GOLGA6L3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GOLGA6L3

No disorders were found for GOLGA6L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA6L3 Gene

Publications for GOLGA6L3 Gene

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for GOLGA6L3 Gene

Sources for GOLGA6L3 Gene

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