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Aliases for GOLGA6L3 Gene

Aliases for GOLGA6L3 Gene

  • Golgin A6 Family-Like 3 2 3 5
  • Golgi Autoantigen, Golgin Subfamily A, 6-Like 3 2

External Ids for GOLGA6L3 Gene

Previous GeneCards Identifiers for GOLGA6L3 Gene

  • GC15P083588
  • GC15P085784

Summaries for GOLGA6L3 Gene

GeneCards Summary for GOLGA6L3 Gene

GOLGA6L3 (Golgin A6 Family-Like 3) is a Protein Coding gene. An important paralog of this gene is GOLGA6L9.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GOLGA6L3 Gene

Genomics for GOLGA6L3 Gene

Regulatory Elements for GOLGA6L3 Gene

Enhancers for GOLGA6L3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G084714 1.4 ENCODE dbSUPER 15.4 -524.4 -524449 3.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC TBX21 NMB ALPK3 ENSG00000259683 GOLGA6L3 GOLGA6L5P DNM1P51 CSPG4P12 UBE2Q2L WDR73 LOC103171574
GH15G084746 1.7 FANTOM5 ENCODE dbSUPER 12.6 -491.6 -491551 5.2 HDGF ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 NMB GOLGA6L4 GOLGA6L5P GOLGA6L3 WDR73 ZNF592 ENSG00000259683 RN7SL331P PDE8A ENSG00000259415
GH15G084816 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -419.0 -419003 9.6 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ARID4B DMAP1 YY1 SLC30A9 CBX5 WDR73 ZNF592 ALPK3 NMB GOLGA6L5P ENSG00000200991 SLC28A1 GOLGA6L3 SEC11A ENSG00000259683
GH15G084786 1 dbSUPER 19.6 -450.7 -450726 5.7 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 CBX5 ELK1 ZNF143 DEK NMB GOLGA6L5P WDR73 GOLGA6L4 ALPK3 LINC00933 GOLGA6L3 LOC103171574 UBE2Q2P1 SEC11A
GH15G084723 1.4 Ensembl ENCODE dbSUPER 8.7 -515.6 -515612 3.0 HDGF RARA ZNF121 GATA2 EGR1 RELB IKZF2 ZBTB2 ELF1 GATAD2B NMB GOLGA6L4 GOLGA6L5P GOLGA6L3 SCAND2P GC15P084731 SEC11A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GOLGA6L3 on UCSC Golden Path with GeneCards custom track

Genomic Location for GOLGA6L3 Gene

Chromosome:
15
Start:
85,240,410 bp from pter
End:
85,247,187 bp from pter
Size:
6,778 bases
Orientation:
Plus strand

Genomic View for GOLGA6L3 Gene

Genes around GOLGA6L3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GOLGA6L3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GOLGA6L3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GOLGA6L3 Gene

Proteins for GOLGA6L3 Gene

  • Protein details for GOLGA6L3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEY3-GG6L3_HUMAN
    Recommended name:
    Putative golgin subfamily A member 6-like protein 3
    Protein Accession:
    A6NEY3

    Protein attributes for GOLGA6L3 Gene

    Size:
    463 amino acids
    Molecular mass:
    55643 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GOLGA6L3 Gene

Post-translational modifications for GOLGA6L3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GOLGA6L3 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for GOLGA6L3 Gene

Domains & Families for GOLGA6L3 Gene

Protein Domains for GOLGA6L3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GOLGA6L3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NEY3

UniProtKB/Swiss-Prot:

GG6L3_HUMAN :
  • Belongs to the GOLGA6 family.
Family:
  • Belongs to the GOLGA6 family.
genes like me logo Genes that share domains with GOLGA6L3: view

No data available for Gene Families for GOLGA6L3 Gene

Function for GOLGA6L3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GOLGA6L3 Gene

Localization for GOLGA6L3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GOLGA6L3 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for GOLGA6L3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with GOLGA6L3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for GOLGA6L3 Gene

Pathways & Interactions for GOLGA6L3 Gene

SuperPathways for GOLGA6L3 Gene

No Data Available

Interacting Proteins for GOLGA6L3 Gene

Gene Ontology (GO) - Biological Process for GOLGA6L3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GOLGA6L3 Gene

Drugs & Compounds for GOLGA6L3 Gene

No Compound Related Data Available

Transcripts for GOLGA6L3 Gene

mRNA/cDNA for GOLGA6L3 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GOLGA6L3 Gene

Golgin A6 family-like 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GOLGA6L3 Gene

No ASD Table

Relevant External Links for GOLGA6L3 Gene

GeneLoc Exon Structure for
GOLGA6L3
ECgene alternative splicing isoforms for
GOLGA6L3

Expression for GOLGA6L3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GOLGA6L3 Gene

mRNA differential expression in normal tissues according to GTEx for GOLGA6L3 Gene

This gene is overexpressed in Testis (x6.0).

Protein differential expression in normal tissues from HIPED for GOLGA6L3 Gene

This gene is overexpressed in Pancreatic juice (44.0) and Peripheral blood mononuclear cells (25.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GOLGA6L3 Gene



Protein tissue co-expression partners for GOLGA6L3 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GOLGA6L3 Gene:

GOLGA6L3

SOURCE GeneReport for Unigene cluster for GOLGA6L3 Gene:

Hs.454625
genes like me logo Genes that share expression patterns with GOLGA6L3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GOLGA6L3 Gene

Orthologs for GOLGA6L3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for GOLGA6L3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC744787 34
  • 98.18 (n)
Species where no ortholog for GOLGA6L3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GOLGA6L3 Gene

ENSEMBL:
Gene Tree for GOLGA6L3 (if available)
TreeFam:
Gene Tree for GOLGA6L3 (if available)

Paralogs for GOLGA6L3 Gene

Paralogs for GOLGA6L3 Gene

(15) SIMAP similar genes for GOLGA6L3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with GOLGA6L3: view

Variants for GOLGA6L3 Gene

Sequence variations from dbSNP and Humsavar for GOLGA6L3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000326458 -- 85,246,613(+) CTCTT(A/G)GGCCT intron-variant
rs1000593640 -- 85,247,457(+) TCTCA(C/T)GTTCA downstream-variant-500B
rs1001753063 -- 85,245,152(+) TGGAG(-/A)GGGGG intron-variant
rs1001825028 -- 85,245,737(+) TCCAA(A/G)AAGAT intron-variant
rs1002828470 -- 85,239,043(+) GGGTG(C/G)GGCCT upstream-variant-2KB

Relevant External Links for GOLGA6L3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GOLGA6L3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GOLGA6L3 Gene

Disorders for GOLGA6L3 Gene

Relevant External Links for GOLGA6L3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GOLGA6L3

No disorders were found for GOLGA6L3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GOLGA6L3 Gene

Publications for GOLGA6L3 Gene

  1. Analysis of the DNA sequence and duplication history of human chromosome 15. (PMID: 16572171) Zody M.C. … Nusbaum C. (Nature 2006) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for GOLGA6L3 Gene

Sources for GOLGA6L3 Gene

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