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GNRH2 Gene

protein-coding GIFtS: 51

GC20P002972

gonadotropin-releasing hormone 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
GnRH-II ^²
LH-RHII ^²
OTTHUMP00000030075 ^²
OTTHUMP00000030076 ^²
OTTHUMP00000030077 ^²
OTTHUMP00000030078 ^²

Descriptions
Progonadoliberin II ^², ³
gonadotropin-releasing hormone 2 ^²
luliberin II ^²
luteinizing hormone-releasing hormone II ^²

External Ids
HGNC: 4420¹
Entrez Gene: 2797²
UniProtKB: O43555³
Ensembl: ENSG00000125787⁷

Search outside databases for aliases for GNRH2 gene

Previous GC identifers: GC20P003012 GC20P003019

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for GNRH2:

The protein encoded by this gene is a preproprotein that is cleaved to form a secreted 10 aa

peptide hormone. The secreted decapeptide regulates reproduction in females by stimulating the

secretion of both luteinizing- and follicle-stimulating hormones. Three transcript variants that

encode unique proproteins but the same peptide hormone have been found for this gene. [provided by

RefSeq]

UniProtKB/Swiss-Prot: GON2_HUMAN, O43555

Function: Stimulates the secretion of gonadotropins; it stimulates the secretion of both

luteinizing and follicle-stimulating hormones

Gene Wiki entry for GNRH2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the GNRH2 gene

Entrez Gene cytogenetic band: 20p13 Ensembl cytogenetic band: 20p13 HGNC cytogenetic band: 20p13

GNRH2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure

GeneLoc location for GC20P002972: (about GC identifiers)

Start:	2,972,268 bp from pter
End:	2,974,393 bp from pter
Size:	2,126 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000020.9 NT_011387.8

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: GON2_HUMAN, O43555 (See protein sequence)

Recommended Name: Progonadoliberin-2 precursor

Size: 120 amino acids; 12918 Da

Subcellular location: Secreted

Secondary accessions: Q14C68 Q9BYN9 Q9BYP0

Alternative splicing: 3 isoforms: O43555-1 O43555-2 O43555-3 (Experimental confirmation may be lacking for some isoforms)

REFSEQ proteins (3 alternative transcripts):

NP_001492.1 NP_847901.1 NP_847902.1

ENSEMBL proteins:

ENSP00000369704 ENSP00000245983 ENSP00000369705 ENSP00000352003 ENSP00000353077

Human Recombinant Proteins

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	Human Recombinant Proteins from Abnova (GNRH2)

OriGene Purified Recombinant Human Protein: GNRH2

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	IEA	--
GO:0005625	soluble fraction	TAS	9419371

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Antibodies for GNRH2:

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	Monoclonal and Polyclonal Antibodies from Abnova (GNRH2)
	Search Novus for antibodies for GNRH2

Assays for GNRH2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry O43555

ProtoNet protein and cluster: O43555

UniProtKB/Swiss-Prot: GON2_HUMAN, O43555

Similarity: Belongs to the GnRH family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (GNRH2)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001501

Applied Biosystems Silencer® siRNAs for GNRH2

Sigma-Aldrich siRNA for GNRH2

Browse shRNA at Sigma-Aldrich

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for GNRH2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001501
Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001501
untagged cDNA clones in CMV expression vector (see all 3): NM_001501

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_001501

UniProtKB/Swiss-Prot: GON2_HUMAN, O43555

Function: Stimulates the secretion of gonadotropins; it stimulates the secretion of both

luteinizing and follicle-stimulating hormones

Genatlas biochemistry entry for GNRH2:

gonadotropin releasing hormone 2,mesencephalic form,expressed in midbrain,kidney,bone marrow

prostate,including a GNRH-associated peptide

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005179	hormone activity	TAS	9419371

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for GNRH2 (Your Favorite Gene powered by Ingenuity)

GNRH Signaling
Melatonin Signaling

GeneDecks GNRH2 for the pathways selected above

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Gene Network Central^TM Interacting Genes and Proteins Network for GNRH2

5/13 Interacting proteins for GNRH2 (ENSP00000245983³) via UniProtKB, MINT, and/or STRING (see all 13 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
GNRHR	ENSP00000226413³	STRING (score=.991)
GNRH1	ENSP00000276414³	STRING (score=.987)
MMP2	ENSP00000219070³	STRING (score=.856)
MMP9	ENSP00000361405³	STRING (score=.84)
TIMP1	ENSP00000218388³	STRING (score=.84)

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2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007165	signal transduction	TAS	9419371
GO:0007275	multicellular organismal development	IEA	--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for GNRH2
3 Novoseek chemical compound relationships for GNRH2 gene

Compound	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
ribonucleic acid	46.17	1	12574197 (1)
progesterone	33.84	14	16860054 (3), 15562029 (2), 11145581 (2), 16728408 (1) (see all 5)
tyrosine	0.00	2	17308117 (1), 14680798 (1)

About this table

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (GNRH2)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_001501

Sigma-Aldrich siRNA for GNRH2

Browse shRNA at Sigma-Aldrich

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_001501 NM_178331 NM_178332

REFSEQ mRNAs for GNRH2 gene (3 alternative transcripts):

NM_001501.1 NM_178331.1 NM_178332.1

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_001501 NM_178331 NM_178332

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_001501
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_001501
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_001501

Additional cDNA sequence:

AF036330.1 AF190640.1 BC069362.1 BC115399.1 BC115400.1

2 DOTS entries:

DT.40282805 DT.92067931

10 AceView cDNA sequences:

AF036330 NM_001501 BF061974 NM_178331 BF062277 AF190640 BC069362 NM_178332

AL732156 AA864512

highest scoring ESTs for GNRH2:

AF036330 BC069362 BF061974 BF062277 AA864512 AF190640 NM_001501 NM_178331 NM_178332 AL732156

Unigene Cluster for GNRH2:

Gonadotropin-releasing hormone 2

Hs.129715 [show with all ESTs]

Unigene Representative Sequence: EL736362

GeneLoc Exon Structure

5 Ensembl transcripts including schematic representations:

ENST00000380346 ENST00000245983 ENST00000380347 ENST00000359100 ENST00000359987

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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GNRH2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for GNRH2

¹ / ² / ³

3 probe-sets matching GNRH2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
31337_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AF036329	0.20	1.00	0.72	1
208519_x_at²^{, 3}	U133-A	2	1.00	0.95	--	--	NM_001501	0.60	1.00	0.82	1
208519_x_at²	U133Plus2	2	1.00	0.95	--	--	--	--	--	--	--

GeneDecks GNRH2 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
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About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.129715
Expression variation in blood from EXPOLDB for GNRH2
UniProtKB/Swiss-Prot: GON2_HUMAN, O43555
Tissue specificity: Midbrain; expressed at significantly higher levels outside the brain (up to
30-fold), particularly in the kidney, bone marrow and prostate

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for GNRH2 gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
cow (Bos taurus)	GNRH2¹	--	gonadotropin-releasing hormone 2	76.77(n) 62.63(a)	788698 XM_001255677.1 XP_001255678.1

About this table Species with no ortholog for GNRH2

ENSEMBL Gene Tree for GNRH2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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10/11 NCBI SNPs in GNRH2 are shown (see all 11 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 40)

AB	SNP ID	Valid	Chr 20 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs6138991^1,2	A,C,F,H	2972070(+)	`GCCTGA/GAGGCT`	3	--	ng5¹		4		EU EA WA	372
	rs3761243^1,2	A,C,F,H	2971022(+)	`AGGCAA/CCCATC`	3	--	ng5¹		11		EA EU WA NA	2488
	rs6138990^1,2	A,C,F,H	2970618(+)	`TTATGC/TTGCAC`	3	--	ng5¹		8		EU EA WA	836
	rs3761244^1,2	A,C,F,H	2971181(+)	`TCCGCA/GTATTT`	3	--	ng5¹		12		EA EU WA NA	2460
	rs6084240^1,2	C,F,H	2972280(+)	`TGCCTG/AAAGGA`	3	--	ut5¹ ese³		4		EU EA WA	420
	rs3761245^1,2	H	2971233(+)	`TTTCCG/AGTCCC`	3	--	ng5¹		4		EU EA WA	420
	rs7363138^1,2	H	2971954(+)	`GGATCA/GGGGAA`	3	--	ng5¹		4		EU EA WA	418
	rs6084239^1,2	H	2970766(+)	`CCCACC/TTGAGT`	3	--	ng5¹		4		EU EA WA	420
	rs6138992^1,2	F,H	2972372(+)	`GCGTAT/CGGTGT`	3	--	int¹		4		EU EA WA	420
	rs35505044^1,2	--	2972103(+)	`AGCATA/GTGTCG`	3	--	ng5¹		0	--	--	--	--

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HapMap Linkage Disequilibrium images for GNRH2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 602352

4 Novoseek disease relationships for GNRH2 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
medulloblastoma	56.47	3	11459794 (1), 15562029 (1), 11931351 (1)
ovarian cancer	51.43	15	17308117 (5), 17906381 (1), 16189183 (1), 11600588 (1) (see all 9)
cancer	0.00	3	17202595 (1), 18222967 (1), 17308117 (1)
tumors	0.00	8	15380810 (2), 17906381 (1), 11600588 (1), 12770744 (1) (see all 6)

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Human Genome Epidemiology Navigator: GNRH2 (2 documents)

(Possibly Related Articles in Doctor's Guide)
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(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/76 PubMed articles for GNRH2 gene (see all 76 ):

Second gene for gonadotropin-releasing hormone in humans. (PubMed id 9419371)^{1, 2, 3, 4} White R.B.... Fernald R.D. (1998)
The neuropeptides GnRH-II and GnRH-I are produced by human T cells and trigger laminin receptor gene expression, adhesion, chemotaxis and homing to specific organs. (PubMed id 12447356)^{1, 2, 3} Chen A....Levite M. (2002)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)^{3, 4} Deloukas P....Rogers J. (2001)
Transcriptional regulation of the human GnRH II gene is mediated by a putative cAMP response element. (PubMed id 11459794)^{1, 3} Chen A....Koch Y. (2001)
Cellular localization of gonadotropin-releasing hormone (GnRH) I and GnRH II in first-trimester human placenta and decidua. (PubMed id 15001648)^{1, 3} Chou C.S....Leung P.C. (2004)
Expression of gonadotropin-releasing hormone type-I (GnRH-I) and type-II (GnRH-II) in human peripheral blood mononuclear cells (PMBCs) and regulation of B-lymphoblastoid cell proliferation by GnRH-I and GnRH-II. (PubMed id 15578334)^{1, 3} Tanriverdi F....Bouloux P.M. (2004)
Multi-factorial role of GnRH-I and GnRH-II in the human ovary. (PubMed id 12770744)^{1, 3} Leung P.C....Zhu X.M. (2003)
Human myometrium and leiomyomas express gonadotropin-releasing hormone 2 and gonadotropin-releasing hormone 2 receptor. (PubMed id 17296196)^{1, 3} Parker J.D....Catherino W.H. (2007)
Differential role of progesterone receptor isoforms in the transcriptional regulation of human gonadotropin-releasing hormone I (GnRH I) receptor, GnRH I, and GnRH II. (PubMed id 15562029)^{1, 3} An B.S....Leung P.C. (2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 2797	HGNC: 4420	AceView: GNRH2	Ensembl:ENSG00000125787	euGenes: HUgn2797
ECgene: GNRH2	H-InvDB: GNRH2

(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for GNRH2
(Available from WIS Yeda, Salk, Tufts)

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Licensable Technologies for GNRH2 gene:

Weizmann Institute:

"Modulation of Neurotransmitter Receptors on T-cell Membranes: a Novel Approach for Treatment of Autoimmune, Infectious and Malignant"

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for GNRH2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for GNRH2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for GNRH2		Antibodies for GNRH2
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GNRH2 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for GNRH2

Summaries
for GNRH2

Genomic Location
for GNRH2

Proteins
for GNRH2

Protein Domains/
Families
for GNRH2

Gene Function
for GNRH2

Pathways & Interactions
for GNRH2

Drugs & Compounds
for GNRH2

Transcripts
for GNRH2

Expression
for GNRH2

Orthologs
for GNRH2

Paralogs
for GNRH2

SNPs/Variants
for GNRH2

Disorders & Mutations
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Medical News
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Publications
for GNRH2

Search for GNRH2

Genome Databases showing GNRH2

Other Databases showing GNRH2

Specialized Databases showing GNRH2

Licensable Technologies
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Services
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

GNRH2 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor GNRH2

Summariesfor GNRH2

Genomic Locationfor GNRH2

Proteinsfor GNRH2

Protein Domains/Familiesfor GNRH2

Gene Functionfor GNRH2

Pathways & Interactionsfor GNRH2

Drugs & Compoundsfor GNRH2

Transcriptsfor GNRH2

Expression for GNRH2

Orthologsfor GNRH2

Paralogsfor GNRH2

SNPs/Variantsfor GNRH2

Disorders & Mutationsfor GNRH2

Medical Newsfor GNRH2

Publicationsfor GNRH2

Search for GNRH2

Genome Databases showing GNRH2

Other Databases showing GNRH2

Specialized Databases showing GNRH2

Licensable Technologiesfor GNRH2

Servicesfor GNRH2

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for GNRH2

Summaries
for GNRH2

Genomic Location
for GNRH2

Proteins
for GNRH2

Protein Domains/
Families
for GNRH2

Gene Function
for GNRH2

Pathways & Interactions
for GNRH2

Drugs & Compounds
for GNRH2

Transcripts
for GNRH2

Expression
for GNRH2

Orthologs
for GNRH2

Paralogs
for GNRH2

SNPs/Variants
for GNRH2

Disorders & Mutations
for GNRH2

Medical News
for GNRH2

Publications
for GNRH2

Licensable Technologies
for GNRH2

Services
for GNRH2