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Aliases & Descriptions for GNB3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions G protein, beta-3 subunit 2 GTP-binding regulatory protein beta-3 chain 2 Transducin beta chain 3 2 , 3 guanine nucleotide binding protein (G protein), beta polypeptide 3 2 guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 3 2 guanine nucleotide-binding protein, beta-3 subunit 2 hypertension associated protein 2
Search outside databases for aliases for GNB3 genePrevious GC identifers: GC12M007019 GC12M007103 GC12P006828
Summaries for GNB3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GNB3 : Heterotrimeric guanine nucleotide-binding proteins (G proteins), which integrate signals betweenreceptors and effector proteins, are composed of an alpha, a beta, and a gamma subunit. Thesesubunits are encoded by families of related genes. This gene encodes a beta subunit. Beta subunitsare important regulators of alpha subunits, as well as of certain signal transduction receptorsand effectors. A single-nucleotide polymorphism (C825T) in this gene is associated with essentialhypertension and obesity. This polymorphism is also associated with the occurrence of the splicevariant GNB3-s, which appears to have increased activity. GNB3-s is an example of alternativesplicing caused by a nucleotide change outside of the splice donor and acceptor sites. Additionalsplice variants may exist for this gene, but they have not been fully described. [provided byRefSeq] UniProtKB/Swiss-Prot: GBB3_HUMAN, P16520 Function : Guanine nucleotide-binding proteins (G proteins) are involved as a modulator ortransducer in various transmembrane signaling systems. The beta and gamma chains are required forthe GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction
Genomic Location for GNB3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GNB3 gene Entrez Gene cytogenetic band: 12p13 Ensembl cytogenetic band: 12p13.31 HGNC cytogenetic band: 12p13 GNB3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P006819:
(about GC identifiers )
Start:
6,819,636 bp from pter
End:
6,826,818 bp from pter
Size:
7,183 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000012.10 NT_009759.15 Proteins for GNB3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GBB3_HUMAN, P16520 (See
protein sequence )Recommended Name: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 Size : 340 amino acids; 37221 Da
Subunit : G proteins are composed of 3 units, alpha, beta and gamma
Secondary accessions : Q9BQC0
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_002066.1 ENSEMBL proteins: ENSP00000229264 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for GNB3: Assays for GNB3:
Protein
Domains/ Families for GNB3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P16520 ProtoNet protein and cluster: P16520
2 Blocks protein families : IPB001632 Beta G-protein (transducin) signature IPB001680 G-protein beta WD-40 repeat signature UniProtKB/Swiss-Prot: GBB3_HUMAN, P16520 Similarity : Belongs to the WD repeat G protein beta familySimilarity : Contains 7 WD repeats
Gene Function for GNB3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002075 Applied Biosystems Silencer ® siRNAs for GNB3 Sigma-Aldrich siRNA and siRNA Panels for GNB3 Sigma-Aldrich shRNA for GNB3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_002075                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_002075                                  untagged cDNA clone in CMV expression vector: NM_002075  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002075 UniProtKB/Swiss-Prot: GBB3_HUMAN, P16520 Function : Guanine nucleotide-binding proteins (G proteins) are involved as a modulator ortransducer in various transmembrane signaling systems. The beta and gamma chains are required forthe GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction
Genatlas biochemistry entry for GNB3 :guanine nucleotide binding protein (G protein),beta,polypeptide 3,with a shortened splice variantGNB3-s associated with essential hypertension and susceptibility factor in obesity in Inuits withthe 825TT variant 1 MGI phenotypic allele for Gnb3 (no phenotypes)2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for GNB3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/21 Sigma-Aldrich "Your Favorite Gene" Pathways for GNB3 (Your Favorite Gene powered by Ingenuity) (see all 21
) Gene Network CentralTM Interacting Genes and Proteins Network for GNB3 5/60 Interacting proteins for GNB3 (ENSP00000229264 3 ) via UniProtKB, MINT, and/or STRING (see all 60
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for GNB3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for GNB3 available from Tocris Bioscience Compound Action
CAS
number Gallein Inhibitor of betagamma signaling [2103-64-2]
About this table 8 Novoseek chemical compound relationships for GNB3 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
nppa
65.20
2
17036337 (1), 15699455 (1)
sodium
31.28
4
9886871 (1), 11259340 (1), 16002097 (1), 17642146 (1)
cholesterol
10.60
4
10701813 (2), 11434508 (1), 15042113 (1)
glucose
7.64
5
12890290 (1), 12165748 (1), 15042113 (1), 12930636 (1) (see all 5 )
lipid
0.98
1
12930636 (1)
potassium
0.00
4
10701813 (2), 15389246 (1), 16002097 (1)
nitric oxide
0.00
8
11434508 (2), 18551105 (2), 19145770 (1), 16497648 (1)
lithium
0.00
1
11992559 (1)
About this table 4 PharmGKB drug compound relationships for GNB3 gene About this table
Transcripts for GNB3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002075 Sigma-Aldrich siRNA and siRNA Panels for GNB3 Sigma-Aldrich shRNA for GNB3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002075
REFSEQ mRNAs for GNB3 gene: NM_002075.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002075
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_002075                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_002075                                  untagged cDNA clone in CMV expression vector: NM_002075  
Additional cDNA sequence: AB209283.1 AF501884.1 AK313091.1 BC000115.1 BC002454.2 BC015920.1 BT009800.1 M31328.1 U47930.1
9 DOTS entries : DT.121170390 DT.112163 DT.95155927 DT.121170335 DT.100779698 DT.40115198 DT.40265129 DT.95155920 DT.102841594
9 AceView cDNA sequences :BC002454 NM_002075 U47930 BC000115 U47931 BC015920 M31328 AF501884 BT009800
highest scoring ESTs for GNB3 :M31328 AF501884 BC000115 BC002454 BT009800 AA136399 AA318037 AA365083 AA505020 AB209283
Unigene Cluster for GNB3: Guanine nucleotide binding protein (G protein), beta polypeptide 3 Hs.631657 [show with all ESTs ] Unigene Representative Sequence: AB209283 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for GNB3 (see all 7
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12 SP1 :               -   -                 -         SP2 :               -   -                 -   -       SP3 :               -   -                 -         SP4 :               -   -                         SP5 :               -                          
About this scheme ECgene alternative splicing isoforms for GNB3 1 Ensembl transcript including schematic representation : ENST00000229264
Expression for GNB3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GNB3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GNB3 1 / 2 / 3
6 probe-sets matching GNB3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTTTCTCCTTSOURCE GeneReport for Unigene cluster: Hs.631657 Expression variation in blood from EXPOLDB for GNB3
Orthologs for GNB3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GNB3 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for GNB3 ENSEMBL Gene Tree for GNB3 Paralogs for GNB3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GNB3 gene GNB2 2 GNB1 2 GNB4 2
SNPs/Variants for GNB3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GNB3 (up to first 250kb)
Disorders & Mutations for GNB3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 139130 disorders : 145500
10/31 Novoseek disease relationships for GNB3 gene (see all 31
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
essential hypertension
79.05
34
10817859 (2), 15042113 (2), 17278960 (1), 10713907 (1) (see all 25 )
obesity
61.41
52
15090636 (3), 12730030 (3), 19065529 (2), 10713907 (2) (see all 27 )
hypertension arterial
48.88
8
11230982 (3), 11816511 (1), 12439636 (1), 15332573 (1) (see all 6 )
genetic susceptibility
48.86
1
10713907 (1)
ventricular hypertrophy
42.77
2
12011775 (1), 15332573 (1)
thyroid adenoma
40.13
1
17136758 (1)
insulin resistance
34.49
10
12930636 (3), 11121369 (1), 12624279 (1), 17161225 (1) (see all 6 )
major depression
31.56
10
14647404 (2), 16302021 (1), 17943025 (1), 12476328 (1) (see all 7 )
mood disorders
30.22
3
11586049 (2), 11992559 (1)
schizophrenia
28.87
4
16139171 (1), 16141801 (1), 16964080 (1), 10884039 (1)
About this table 5 PharmGKB disease relationships for GNB3 gene About this table Human Gene Mutation Database : GNB3 Genetic Association Database: GNB3 Human Genome Epidemiology Navigator: GNB3 (219 documents)
Medical News for GNB3 (Possibly Related Articles in
Doctor's Guide )
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Publications for GNB3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/306 PubMed articles for GNB3 gene (see all 306
): Associations of a human G protein beta3 subunit dimorphism with insulin resistance and carotid atherosclerosis. (PubMed id 12624279) 1, 3, 6, 7 Wascher T.C....Renner W. (2003) The 825C>T polymorphism of the G-protein beta-3 subunit gene (GNB3) and breast cancer. (PubMed id 15019160) 1, 3, 6 Krippl P....Samonigg H. (2004) G protein beta 3 gene: structure, promoter, and additional polymorphisms. (PubMed id 10904009) 1, 3, 4 Rosskopf D.... Siffert W. (2000) [Association between G-protein beta3 subunit (GNB(3)) gene C825T polymorphism, hypertension, insulin resistance and obesity] (PubMed id 12930636) 1, 3, 6 Chen Y.Y....Hui R.T. (2003) Heterogeneity in hand veins responses to acetylcholine is not associated with polymorphisms in the G-protein beta3-subunit (C825T) and endothelial nitric oxide synthase (G894T) genes but with serum low density lipoprotein cholesterol. (PubMed id 11434508) 1, 3, 6 Grossmann M....Kirch W. (2001) Association of G-protein beta-3 subunit gene (GNB3) T825 allele with Type II diabetes. (PubMed id 15855877) 1, 3, 6 Kiani J.G....Frossard P.M. (2005) Association between a G-protein beta 3 subunit gene polymorphism and the symptomatology and treatment responses of major depressive disorders. (PubMed id 14647404) 1, 3, 6 Lee H.J....Lee M.S. (2004) G protein beta3 gene variant, vascular function, and insulin sensitivity in type 2 diabetes. (PubMed id 12511541) 1, 3, 6 Fernandez-Real J.M....Ricart W. (2003) Association between a polymorphism in the G protein beta3 subunit gene (GNB3) with arterial hypertension but not with myocardial infarction. (PubMed id 11230982) 1, 3, 6 Hengstenberg C....Holmer S.R. (2001) [Absence of an association between the C825T polymorphism of the G-protein beta 3 subunit and salt-sensitivity in essential arterial hypertension] (PubMed id 11816511) 1, 3, 6 Gonzalez-Nunez D....Poch E. (2001)
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Genome Databases showing GNB3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GNB3
(According to HUGE )
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--
Specialized Databases showing GNB3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GNB3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GNB3:
Recombinant Proteins (GNB3 ) Antibodies (GNB3 )
Tocris compounds for GNB3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009