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Aliases for GMIP Gene

Aliases for GMIP Gene

  • GEM Interacting Protein 2 3
  • GEM-Interacting Protein 3
  • ARHGAP46 3

External Ids for GMIP Gene

Previous GeneCards Identifiers for GMIP Gene

  • GC19M020131
  • GC19M019585
  • GC19M019602
  • GC19M019603
  • GC19M019604
  • GC19M019740
  • GC19M019302

Summaries for GMIP Gene

Entrez Gene Summary for GMIP Gene

  • This gene encodes a member of the ARHGAP family of Rho/Rac/Cdc42-like GTPase activating proteins. The encoded protein interacts with the Ras-related protein Gem through its N-terminal domain. Separately, it interacts with RhoA through a RhoGAP domain, and stimulates RhoA-dependent GTPase activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

GeneCards Summary for GMIP Gene

GMIP (GEM Interacting Protein) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Rho GTPase cycle. An important paralog of this gene is HMHA1.

UniProtKB/Swiss-Prot for GMIP Gene

  • Stimulates, in vitro and in vivo, the GTPase activity of RhoA.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GMIP Gene

Genomics for GMIP Gene

Regulatory Elements for GMIP Gene

Genomic Location for GMIP Gene

Start:
19,629,473 bp from pter
End:
19,643,667 bp from pter
Size:
14,195 bases
Orientation:
Minus strand

Genomic View for GMIP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GMIP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GMIP Gene

Proteins for GMIP Gene

  • Protein details for GMIP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P107-GMIP_HUMAN
    Recommended name:
    GEM-interacting protein
    Protein Accession:
    Q9P107
    Secondary Accessions:
    • A0AVN9
    • B7ZLZ0

    Protein attributes for GMIP Gene

    Size:
    970 amino acids
    Molecular mass:
    106683 Da
    Quaternary structure:
    • Interacts with GEM through its N-terminal.

    Three dimensional structures from OCA and Proteopedia for GMIP Gene

    Alternative splice isoforms for GMIP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GMIP Gene

Proteomics data for GMIP Gene at MOPED

Post-translational modifications for GMIP Gene

  • Ubiquitination at Lys624 and Lys672
  • Modification sites at PhosphoSitePlus

Other Protein References for GMIP Gene

No data available for DME Specific Peptides for GMIP Gene

Domains for GMIP Gene

Gene Families for GMIP Gene

HGNC:
  • ARHGAP :Rho GTPase activating proteins

Protein Domains for GMIP Gene

Suggested Antigen Peptide Sequences for GMIP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9P107

UniProtKB/Swiss-Prot:

GMIP_HUMAN :
  • Q9P107
Domain:
  • Contains 1 F-BAR domain.
  • Contains 1 Rho-GAP domain.
Similarity:
  • Contains 1 phorbol-ester/DAG-type zinc finger.
genes like me logo Genes that share domains with GMIP: view

Function for GMIP Gene

Molecular function for GMIP Gene

UniProtKB/Swiss-Prot Function: Stimulates, in vitro and in vivo, the GTPase activity of RhoA.

Gene Ontology (GO) - Molecular Function for GMIP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005096 GTPase activator activity IDA 12093360
GO:0005515 protein binding IPI 12093360
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with GMIP: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for GMIP Gene

Localization for GMIP Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GMIP Gene COMPARTMENTS Subcellular localization image for GMIP gene
Compartment Confidence
cytosol 4
nucleus 3
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for GMIP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IC 12093360
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with GMIP: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for GMIP Gene

Pathways for GMIP Gene

genes like me logo Genes that share pathways with GMIP: view

Pathways by source for GMIP Gene

Gene Ontology (GO) - Biological Process for GMIP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002230 positive regulation of defense response to virus by host IMP 22020285
GO:0007165 signal transduction --
GO:0007264 small GTPase mediated signal transduction TAS --
GO:0034260 negative regulation of GTPase activity IDA 12093360
GO:0035556 intracellular signal transduction IDA 12093360
genes like me logo Genes that share ontologies with GMIP: view

Compounds for GMIP Gene

(843) HMDB Compounds for GMIP Gene

Compound Synonyms Cas Number PubMed IDs
DG(14:0/14:0/0:0)
  • DAG(14:0/14:0)
Not Available
DG(14:0/14:1(9Z)/0:0)
  • DAG(14:0/14:1)
Not Available
DG(14:0/15:0/0:0)
  • Diacylglycerol(29:0)
Not Available
DG(14:0/16:0/0:0)
  • DAG(30:0)
Not Available
DG(14:0/16:1(9Z)/0:0)
  • DG(30:1)
Not Available
genes like me logo Genes that share compounds with GMIP: view

Transcripts for GMIP Gene

Unigene Clusters for GMIP Gene

GEM interacting protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GMIP

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for GMIP

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GMIP Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22
SP1:
SP2:
SP3:
SP4: -
SP5:
SP6:

Relevant External Links for GMIP Gene

GeneLoc Exon Structure for
GMIP
ECgene alternative splicing isoforms for
GMIP

Expression for GMIP Gene

mRNA expression in normal human tissues for GMIP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GMIP Gene

This gene is overexpressed in Whole Blood (25.5) and Spleen (4.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GMIP Gene

SOURCE GeneReport for Unigene cluster for GMIP Gene Hs.49427

genes like me logo Genes that share expressions with GMIP: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for GMIP Gene

Orthologs for GMIP Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GMIP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GMIP 35
  • 99.48 (n)
  • 99.48 (a)
GMIP 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GMIP 35
  • 85.8 (n)
  • 84.56 (a)
GMIP 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GMIP 35
  • 87.25 (n)
  • 88.62 (a)
GMIP 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gmip 35
  • 82.88 (n)
  • 82.47 (a)
Gmip 16
Gmip 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GMIP 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GMIP 36
  • 54 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gmip 35
  • 82.43 (n)
  • 81.43 (a)
chicken
(Gallus gallus)
Aves GMIP 35
  • 58.81 (n)
  • 51.9 (a)
GMIP 36
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GMIP 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gmip 35
  • 54.63 (n)
  • 48.78 (a)
zebrafish
(Danio rerio)
Actinopterygii gmip 36
  • 42 (a)
OneToOne
LOC565801 35
  • 53.12 (n)
  • 44.15 (a)
worm
(Caenorhabditis elegans)
Secernentea spv-1 36
  • 20 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes BAG7 38
RGA1 36
  • 13 (a)
ManyToMany
RGA2 36
  • 13 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 34 (a)
OneToMany
Species with no ortholog for GMIP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GMIP Gene

ENSEMBL:
Gene Tree for GMIP (if available)
TreeFam:
Gene Tree for GMIP (if available)

Paralogs for GMIP Gene

Paralogs for GMIP Gene

Selected SIMAP similar genes for GMIP Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with GMIP: view

Variants for GMIP Gene

Sequence variations from dbSNP and Humsavar for GMIP Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs12003 - 19,634,670(+) GGCGT(C/T)GTAGA missense, reference
rs2043293 -- 19,640,647(+) ACCAG(A/C)CCAGT intron-variant
rs2304128 -- 19,635,342(+) GAAAG(G/T)CTGTA intron-variant
rs2304129 -- 19,635,405(+) TAACC(C/G)AGGCC intron-variant
rs3794995 -- 19,643,073(+) ACGGC(C/T)GGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GMIP Gene

Variant ID Type Subtype PubMed ID
nsv509725 CNV Insertion 20534489
nsv911309 CNV Loss 21882294
nsv911310 CNV Loss 21882294

Relevant External Links for GMIP Gene

HapMap Linkage Disequilibrium report
GMIP
Human Gene Mutation Database (HGMD)
GMIP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GMIP Gene

Disorders for GMIP Gene

Relevant External Links for GMIP

Genetic Association Database (GAD)
GMIP
Human Genome Epidemiology (HuGE) Navigator
GMIP
genes like me logo Genes that share disorders with GMIP: view

No data available for UniProtKB/Swiss-Prot for GMIP Gene

Publications for GMIP Gene

  1. The Gem interacting protein (GMIP) gene is associated with major depressive disorder. (PMID: 16086184) Tadokoro K. … Kunugi H. (Neurogenetics 2005) 2 3 23 48
  2. A novel Rho GTPase-activating-protein interacts with Gem, a member of the Ras superfamily of GTPases. (PMID: 12093360) Aresta S. … de Gunzburg J. (Biochem. J. 2002) 2 3 4
  3. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 48
  4. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3
  5. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3

Products for GMIP Gene

Sources for GMIP Gene

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