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Aliases for GLYCAM1 Gene

Aliases for GLYCAM1 Gene

  • Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene) 2 3 5
  • Glycosylation Dependent Cell Adhesion Molecule 1 2
  • GlyCAM-1 4

External Ids for GLYCAM1 Gene

Previous GeneCards Identifiers for GLYCAM1 Gene

  • GC00U906255
  • GC12M053288
  • GC12M055001
  • GC12M052040

Summaries for GLYCAM1 Gene

GeneCards Summary for GLYCAM1 Gene

GLYCAM1 (Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene)) is a Pseudogene. Among its related pathways are Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell and Innate Immune System.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLYCAM1 Gene

Genomics for GLYCAM1 Gene

Regulatory Elements for GLYCAM1 Gene

Enhancers for GLYCAM1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G054590 0.9 ENCODE 0.4 +19.2 19230 1.2 HDAC1 HDGF PKNOX1 CBX3 ZBTB40 ELK1 ZNF143 ZNF207 ETV6 RELB CBX5 PPP1R1A GLYCAM1
GH12G054603 0.8 ENCODE 0.4 +7.1 7101 0.2 CTCF ZNF384 ZNF2 RAD21 ZEB1 ZNF366 ZSCAN5C ZNF143 SMC3 CREM GLYCAM1 PPP1R1A
GH12G054596 0.7 ENCODE 0.4 +13.8 13821 0.2 CTCF ZNF654 TEAD1 TEAD4 TRIM22 REST RAD21 TEAD3 JUND NCOR1 PPP1R1A GLYCAM1
GH12G054605 0.3 FANTOM5 0.7 +4.5 4499 0.1 NCKAP1L PPP1R1A GLYCAM1
GH12G054606 0.2 ENCODE 0.7 +3.8 3791 0.2 GLYCAM1 PPP1R1A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GLYCAM1 on UCSC Golden Path with GeneCards custom track

Genomic Location for GLYCAM1 Gene

Chromosome:
12
Start:
54,608,187 bp from pter
End:
54,610,462 bp from pter
Size:
2,276 bases
Orientation:
Minus strand

Genomic View for GLYCAM1 Gene

Genes around GLYCAM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLYCAM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLYCAM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLYCAM1 Gene

Proteins for GLYCAM1 Gene

  • Protein details for GLYCAM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVK1-GLCM1_HUMAN
    Recommended name:
    Putative glycosylation-dependent cell adhesion molecule 1
    Protein Accession:
    Q8IVK1
    Secondary Accessions:
    • Q8IUA8

    Protein attributes for GLYCAM1 Gene

    Size:
    47 amino acids
    Molecular mass:
    5018 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GLYCAM1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GLYCAM1 Gene

Post-translational modifications for GLYCAM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GLYCAM1 Gene

Domains & Families for GLYCAM1 Gene

Protein Domains for GLYCAM1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for GLYCAM1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8IVK1

UniProtKB/Swiss-Prot:

GLCM1_HUMAN :
  • Belongs to the PP3/GlyCAM-1 family.
Family:
  • Belongs to the PP3/GlyCAM-1 family.
genes like me logo Genes that share domains with GLYCAM1: view

No data available for Gene Families for GLYCAM1 Gene

Function for GLYCAM1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLYCAM1 Gene

Localization for GLYCAM1 Gene

Gene Ontology (GO) - Cellular Components for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for GLYCAM1 Gene

Pathways & Interactions for GLYCAM1 Gene

genes like me logo Genes that share pathways with GLYCAM1: view

Pathways by source for GLYCAM1 Gene

Interacting Proteins for GLYCAM1 Gene

Selected Interacting proteins: Q8IVK1-GLCM1_HUMAN for GLYCAM1 Gene via IID

Symbol External ID(s) Details
ABCA9

Gene Ontology (GO) - Biological Process for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050776 regulation of immune response TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for SIGNOR curated interactions for GLYCAM1 Gene

Drugs & Compounds for GLYCAM1 Gene

No Compound Related Data Available

Transcripts for GLYCAM1 Gene

mRNA/cDNA for GLYCAM1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GLYCAM1 Gene

No ASD Table

Relevant External Links for GLYCAM1 Gene

GeneLoc Exon Structure for
GLYCAM1
ECgene alternative splicing isoforms for
GLYCAM1

Expression for GLYCAM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GLYCAM1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GLYCAM1 Gene:

GLYCAM1

SOURCE GeneReport for Unigene cluster for GLYCAM1 Gene:

Hs.483519

mRNA Expression by UniProt/SwissProt for GLYCAM1 Gene:

Q8IVK1-GLCM1_HUMAN
Tissue specificity: Expressed in cells harvested from milk of lactating women. Not found in other tissues.
genes like me logo Genes that share expression patterns with GLYCAM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GLYCAM1 Gene

Orthologs for GLYCAM1 Gene

Evolution for GLYCAM1 Gene

ENSEMBL:
Gene Tree for GLYCAM1 (if available)
TreeFam:
Gene Tree for GLYCAM1 (if available)

No data available for Orthologs for GLYCAM1 Gene

Paralogs for GLYCAM1 Gene

No data available for Paralogs for GLYCAM1 Gene

Variants for GLYCAM1 Gene

Sequence variations from dbSNP and Humsavar for GLYCAM1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000508617 -- 54,609,169(+) TTTTC(-/T)TTTTT intron-variant
rs1002614102 -- 54,607,960(+) CATGG(A/G)GCAGT downstream-variant-500B
rs1005380555 -- 54,611,229(+) GGTTC(C/G)TAAGA upstream-variant-2KB
rs1006118477 -- 54,608,208(+) GAGCC(A/G/T)AAAGA nc-transcript-variant
rs1007643556 -- 54,609,094(+) TCCCA(A/G)TGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GLYCAM1 Gene

Variant ID Type Subtype PubMed ID
nsv832421 CNV gain 17160897

Relevant External Links for GLYCAM1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GLYCAM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GLYCAM1 Gene

Disorders for GLYCAM1 Gene

Relevant External Links for GLYCAM1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLYCAM1

No disorders were found for GLYCAM1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLYCAM1 Gene

Publications for GLYCAM1 Gene

  1. Human GlyCAM-1 mRNA is expressed in the mammary gland as splicing variants and encodes various aberrant truncated proteins. (PMID: 12057858) Rasmussen L.K. … Sorensen E.S. (Immunol. Lett. 2002) 2 3 4 64
  2. Expression of potential lymphocyte trafficking mediator molecules in the mammary gland. (PMID: 12588680) Nishimura T. (Vet. Res. 2003) 3 64

Products for GLYCAM1 Gene

Sources for GLYCAM1 Gene

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