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Aliases for GLYCAM1 Gene

Aliases for GLYCAM1 Gene

  • Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene) 2 3
  • Glycosylation Dependent Cell Adhesion Molecule 1 2
  • GlyCAM-1 4

External Ids for GLYCAM1 Gene

Previous GeneCards Identifiers for GLYCAM1 Gene

  • GC00U906255
  • GC12M053288
  • GC12M055001
  • GC12M052040

Summaries for GLYCAM1 Gene

GeneCards Summary for GLYCAM1 Gene

GLYCAM1 (Glycosylation Dependent Cell Adhesion Molecule 1 (Pseudogene)) is a Pseudogene. Among its related pathways are Immune System and Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLYCAM1 Gene

Genomics for GLYCAM1 Gene

Regulatory Elements for GLYCAM1 Gene

Genomic Location for GLYCAM1 Gene

Chromosome:
12
Start:
54,608,187 bp from pter
End:
54,610,462 bp from pter
Size:
2,276 bases
Orientation:
Minus strand

Genomic View for GLYCAM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GLYCAM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLYCAM1 Gene

Proteins for GLYCAM1 Gene

  • Protein details for GLYCAM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IVK1-GLCM1_HUMAN
    Recommended name:
    Putative glycosylation-dependent cell adhesion molecule 1
    Protein Accession:
    Q8IVK1
    Secondary Accessions:
    • Q8IUA8

    Protein attributes for GLYCAM1 Gene

    Size:
    47 amino acids
    Molecular mass:
    5018 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for GLYCAM1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GLYCAM1 Gene

Proteomics data for GLYCAM1 Gene at MOPED

Post-translational modifications for GLYCAM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GLYCAM1 Gene

Domains & Families for GLYCAM1 Gene

Protein Domains for GLYCAM1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for GLYCAM1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8IVK1

UniProtKB/Swiss-Prot:

GLCM1_HUMAN :
  • Belongs to the PP3/GlyCAM-1 family.
Family:
  • Belongs to the PP3/GlyCAM-1 family.
genes like me logo Genes that share domains with GLYCAM1: view

No data available for Gene Families for GLYCAM1 Gene

Function for GLYCAM1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GLYCAM1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLYCAM1 Gene

Localization for GLYCAM1 Gene

Gene Ontology (GO) - Cellular Components for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for GLYCAM1 Gene

Pathways & Interactions for GLYCAM1 Gene

genes like me logo Genes that share pathways with GLYCAM1: view

Pathways by source for GLYCAM1 Gene

Interacting Proteins for GLYCAM1 Gene

Gene Ontology (GO) - Biological Process for GLYCAM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050776 regulation of immune response TAS --
genes like me logo Genes that share ontologies with GLYCAM1: view

No data available for SIGNOR curated interactions for GLYCAM1 Gene

Drugs & Compounds for GLYCAM1 Gene

No Compound Related Data Available

Transcripts for GLYCAM1 Gene

mRNA/cDNA for GLYCAM1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GLYCAM1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GLYCAM1 Gene

No ASD Table

Relevant External Links for GLYCAM1 Gene

GeneLoc Exon Structure for
GLYCAM1
ECgene alternative splicing isoforms for
GLYCAM1

Expression for GLYCAM1 Gene

mRNA expression in normal human tissues for GLYCAM1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for GLYCAM1 Gene Hs.483519

mRNA Expression by UniProt/SwissProt for GLYCAM1 Gene

Q8IVK1-GLCM1_HUMAN
Tissue specificity: Expressed in cells harvested from milk of lactating women. Not found in other tissues.
genes like me logo Genes that share expression patterns with GLYCAM1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for GLYCAM1 Gene

Orthologs for GLYCAM1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for GLYCAM1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Glycam1 16
Species with no ortholog for GLYCAM1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GLYCAM1 Gene

ENSEMBL:
Gene Tree for GLYCAM1 (if available)
TreeFam:
Gene Tree for GLYCAM1 (if available)

Paralogs for GLYCAM1 Gene

No data available for Paralogs for GLYCAM1 Gene

Variants for GLYCAM1 Gene

Sequence variations from dbSNP and Humsavar for GLYCAM1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs882419 -- 54,611,557(-) ATCTT(A/G)TCCAA upstream-variant-2KB
rs882420 -- 54,611,159(-) CTGTC(A/G)GCTCA upstream-variant-2KB
rs937308 -- 54,610,366(-) TAGCC(G/T)CCACC nc-transcript-variant
rs937309 -- 54,608,944(+) GAGTC(C/T)ATCAG intron-variant
rs937310 -- 54,608,994(+) GGTCC(C/T)GTATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GLYCAM1 Gene

Variant ID Type Subtype PubMed ID
nsv832421 CNV Gain 17160897

Relevant External Links for GLYCAM1 Gene

HapMap Linkage Disequilibrium report
GLYCAM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for GLYCAM1 Gene

Disorders for GLYCAM1 Gene

Relevant External Links for GLYCAM1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLYCAM1
genes like me logo Genes that share disorders with GLYCAM1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLYCAM1 Gene

Publications for GLYCAM1 Gene

  1. Human GlyCAM-1 mRNA is expressed in the mammary gland as splicing variants and encodes various aberrant truncated proteins. (PMID: 12057858) Rasmussen L.K. … Sorensen E.S. (Immunol. Lett. 2002) 2 67
  2. Expression of potential lymphocyte trafficking mediator molecules in the mammary gland. (PMID: 12588680) Nishimura T. (Vet. Res. 2003) 67

Products for GLYCAM1 Gene

Sources for GLYCAM1 Gene

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