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Aliases for GLUD2 Gene

Aliases for GLUD2 Gene

  • Glutamate Dehydrogenase 2 2 3 5
  • Glutamate Dehydrogenase Pseudogene 1 2 3
  • EC 1.4.1.3 4 63
  • GLUDP1 3 4
  • GDH 2 3 4
  • Testicular Secretory Protein Li 14 3
  • EC 1.4.1 63
  • GDH2 3

External Ids for GLUD2 Gene

Previous HGNC Symbols for GLUD2 Gene

  • GLUDP1

Previous GeneCards Identifiers for GLUD2 Gene

  • GC0XP114899
  • GC0XU900011
  • GC0XP9V0098
  • GC0XP119906
  • GC0XP120009
  • GC0XP120181
  • GC0XP109559

Summaries for GLUD2 Gene

Entrez Gene Summary for GLUD2 Gene

  • The protein encoded by this gene is localized to the mitochondrion and acts as a homohexamer to recycle glutamate during neurotransmission. The encoded enzyme catalyzes the reversible oxidative deamination of glutamate to alpha-ketoglutarate. This gene is intronless.[provided by RefSeq, Jan 2010]

GeneCards Summary for GLUD2 Gene

GLUD2 (Glutamate Dehydrogenase 2) is a Protein Coding gene. Diseases associated with GLUD2 include Parkinson Disease, Late-Onset and Rett Syndrome. Among its related pathways are Amino acid synthesis and interconversion (transamination) and Carbon metabolism. GO annotations related to this gene include GTP binding and ADP binding. An important paralog of this gene is GLUD1.

UniProtKB/Swiss-Prot for GLUD2 Gene

  • Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Gene Wiki entry for GLUD2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLUD2 Gene

Genomics for GLUD2 Gene

Regulatory Elements for GLUD2 Gene

Enhancers for GLUD2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around GLUD2 on UCSC Golden Path with GeneCards custom track

Promoters for GLUD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around GLUD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for GLUD2 Gene

Chromosome:
X
Start:
121,047,588 bp from pter
End:
121,050,080 bp from pter
Size:
2,493 bases
Orientation:
Plus strand

Genomic View for GLUD2 Gene

Genes around GLUD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLUD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLUD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLUD2 Gene

Proteins for GLUD2 Gene

  • Protein details for GLUD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P49448-DHE4_HUMAN
    Recommended name:
    Glutamate dehydrogenase 2, mitochondrial
    Protein Accession:
    P49448
    Secondary Accessions:
    • B2R8G0
    • Q9UDQ4

    Protein attributes for GLUD2 Gene

    Size:
    558 amino acids
    Molecular mass:
    61434 Da
    Quaternary structure:
    • Homohexamer.

neXtProt entry for GLUD2 Gene

Proteomics data for GLUD2 Gene at MOPED

Post-translational modifications for GLUD2 Gene

  • Stoichiometry shows that ADP-ribosylation occurs in one subunit per catalytically active homohexamer.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GLUD2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for GLUD2 (Glutamate Dehydrogenase 2/GLUD2)

Domains & Families for GLUD2 Gene

Suggested Antigen Peptide Sequences for GLUD2 Gene

Graphical View of Domain Structure for InterPro Entry

P49448

UniProtKB/Swiss-Prot:

DHE4_HUMAN :
  • Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
Family:
  • Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
genes like me logo Genes that share domains with GLUD2: view

No data available for Gene Families for GLUD2 Gene

Function for GLUD2 Gene

Molecular function for GLUD2 Gene

GENATLAS Biochemistry:
glutamate dehydrogenase 2,expressed in retina,testis,brain
UniProtKB/Swiss-Prot CatalyticActivity:
L-glutamate + H(2)O + NAD(P)(+) = 2-oxoglutarate + NH(3) + NAD(P)H.
UniProtKB/Swiss-Prot Function:
Important for recycling the chief excitatory neurotransmitter, glutamate, during neurotransmission.

Enzyme Numbers (IUBMB) for GLUD2 Gene

Gene Ontology (GO) - Molecular Function for GLUD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004353 glutamate dehydrogenase [NAD(P)+] activity IDA 11032875
GO:0070728 leucine binding IDA 12742085
genes like me logo Genes that share ontologies with GLUD2: view
genes like me logo Genes that share phenotypes with GLUD2: view

Animal Model Products

CRISPR Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GLUD2 Gene

Localization for GLUD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GLUD2 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GLUD2 Gene COMPARTMENTS Subcellular localization image for GLUD2 gene
Compartment Confidence
mitochondrion 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for GLUD2 Gene

Pathways & Interactions for GLUD2 Gene

genes like me logo Genes that share pathways with GLUD2: view

Gene Ontology (GO) - Biological Process for GLUD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006520 cellular amino acid metabolic process IEA --
GO:0006538 glutamate catabolic process IDA 11032875
genes like me logo Genes that share ontologies with GLUD2: view

No data available for SIGNOR curated interactions for GLUD2 Gene

Drugs & Compounds for GLUD2 Gene

(6) Drugs for GLUD2 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Famotidine Approved Pharma Histamine H2-receptor antagonist 57
L-Glutamic Acid Nutra Full agonist, Agonist, Target 0
NADH Nutra Target 0
NAD Pharma Full agonist, Agonist 0

(12) Additional Compounds for GLUD2 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ammonia
  • Ammonia anhydrous
  • Ammonia inhalant
  • Ammonia solution strong [usan]
  • Ammonia water
  • Ammoniak
7664-41-7
Hydrogen Ion
  • Hydrogen cation
  • Hydron
  • Proton
NADP
  • Adenine-nicotinamide dinucleotide phosphate
  • b-NADP
  • b-Nicotinamide adenine dinucleotide phosphate
  • b-TPN
  • beta-NADP
53-59-8
nadph
  • 2'-(Dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-b-D-ribofuranosylnicotinamide
  • 2'-(Dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-beta-delta-ribofuranosylnicotinamide
  • Adenosine 5'-(trihydrogen diphosphate) 2'-(dihydrogen phosphate) P'-5'-ester with 1,4-dihydro-1-beta-D-ribofuranosyl-3-pyridinecarboxamide
  • Adenosine 5'-(trihydrogen diphosphate) 2'-(dihydrogen phosphate) P'-5'-ester with 1,4-dihydro-1-beta-delta-ribofuranosyl-3-pyridinecarboxamide
  • b-NADPH
53-57-6
Oxoglutaric acid
  • 2-Ketoglutarate
  • 2-Ketoglutaric acid
  • 2-Oxo-1,5-pentanedioate
  • 2-Oxo-1,5-pentanedioic acid
  • 2-Oxoglutarate
328-50-7
genes like me logo Genes that share compounds with GLUD2: view

Transcripts for GLUD2 Gene

mRNA/cDNA for GLUD2 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(23) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GLUD2 Gene

Glutamate dehydrogenase 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GLUD2 Gene

No ASD Table

Relevant External Links for GLUD2 Gene

GeneLoc Exon Structure for
GLUD2
ECgene alternative splicing isoforms for
GLUD2

Expression for GLUD2 Gene

mRNA expression in normal human tissues for GLUD2 Gene

Protein differential expression in normal tissues from HIPED for GLUD2 Gene

This gene is overexpressed in Heart (23.5), Brain (19.9), and Ovary (10.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for GLUD2 Gene



SOURCE GeneReport for Unigene cluster for GLUD2 Gene Hs.368538

mRNA Expression by UniProt/SwissProt for GLUD2 Gene

P49448-DHE4_HUMAN
Tissue specificity: Expressed in retina, testis and, at a lower level, brain.
genes like me logo Genes that share expression patterns with GLUD2: view

Protein tissue co-expression partners for GLUD2 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for GLUD2 Gene

Orthologs for GLUD2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for GLUD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GLUD2 35
  • 99.34 (n)
  • 98.92 (a)
cow
(Bos Taurus)
Mammalia GLUD1 36
  • 93 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 96 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 62 (a)
ManyToMany
-- 36
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Glud1 36
  • 94 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 87 (a)
ManyToMany
-- 36
  • 93 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 36
  • 89 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 85 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii glud1a 36
  • 83 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG4434 37
  • 46 (a)
Gdh 37
  • 66 (a)
Gdh 36
  • 65 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ZK829.4 37
  • 62 (a)
gdh-1 36
  • 60 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GDH1 36
  • 25 (a)
ManyToMany
GDH3 36
  • 25 (a)
ManyToMany
GDH1 38
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11667 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10003 36
  • 66 (a)
OneToMany
Species with no ortholog for GLUD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GLUD2 Gene

ENSEMBL:
Gene Tree for GLUD2 (if available)
TreeFam:
Gene Tree for GLUD2 (if available)

Paralogs for GLUD2 Gene

Paralogs for GLUD2 Gene

(1) SIMAP similar genes for GLUD2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GLUD2: view

Variants for GLUD2 Gene

Sequence variations from dbSNP and Humsavar for GLUD2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
VAR_048867 -
rs749727579 -- 121,049,839(+) ATTTT(G/T)CAGAT utr-variant-3-prime
rs3861 -- 121,049,901(-) ACNTT(A/T)TTCTA utr-variant-3-prime
rs749918586 -- 121,049,503(+) CAAAT(C/T)AGCCC utr-variant-3-prime
rs5911062 -- 121,050,288(+) CCCTG(A/T)TTGGA downstream-variant-500B

Variation tolerance for GLUD2 Gene

Residual Variation Intolerance Score: 66.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.94; 49.15% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GLUD2 Gene

Human Gene Mutation Database (HGMD)
GLUD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GLUD2 Gene

Disorders for GLUD2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GLUD2 Gene - From: ClinVar, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
parkinson disease, late-onset
  • parkinson disease
rett syndrome
  • rett syndrome, preserved speech variant
- elite association - COSMIC cancer census association via MalaCards
Search GLUD2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for GLUD2

Genetic Association Database (GAD)
GLUD2
Human Genome Epidemiology (HuGE) Navigator
GLUD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLUD2
genes like me logo Genes that share disorders with GLUD2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GLUD2 Gene

Publications for GLUD2 Gene

  1. Novel human glutamate dehydrogenase expressed in neural and testicular tissues and encoded by an X-linked intronless gene. (PMID: 8207021) Shashidharan P. … Plaitakis A. (J. Biol. Chem. 1994) 2 3 4 23 67
  2. Nerve tissue-specific human glutamate dehydrogenase that is thermolabile and highly regulated by ADP. (PMID: 9109504) Shashidharan P. … Plaitakis A. (J. Neurochem. 1997) 2 3 23
  3. The human GLUD2 glutamate dehydrogenase: localization and functional aspects. (PMID: 19428807) Zaganas I. … Plaitakis A. (Neurochem. Int. 2009) 3 23
  4. Human GLUD1 and GLUD2 glutamate dehydrogenase localize to mitochondria and endoplasmic reticulum. (PMID: 19448744) Mastorodemos V. … Plaitakis A. (Biochem. Cell Biol. 2009) 3 23
  5. Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection. (PMID: 18688271) Rosso L. … Kaessmann H. (PLoS Genet. 2008) 3 23

Products for GLUD2 Gene

Sources for GLUD2 Gene

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