GLTSCR2 Gene
protein-coding GIFtS: 49
GCID: GC19P048248
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glioma tumor suppressor candidate region gene 2
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Aliases for GLTSCR2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb) About This Section
|
| Aliases |
|---|
| Glioma Tumor Suppressor Candidate Region Gene 21 2 | | PICT-11 2 | | P601 | | PICT12 | | Glioma Tumor Suppressor Candidate Region Gene 2 Protein2 | | Protein Interacting With Carboxyl Terminus 12 |
Export aliases for GLTSCR2 gene to outside databasesPrevious GC identifers: GC19P048895 GC19P048639 GC19P052924 GC19P052940 GC19P052934 GC19P044676 |
Summaries for GLTSCR2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| Gene Wiki entry for GLTSCR2
|
Genomic Views for GLTSCR2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics) About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011109.16
Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GLTSCR2 gene promoter: E2F-4 E2F-3a E2F-5 NF-1 NF-1/L p53 E2F-2 E2F-1 E2F Other transcription factors
Search SABiosciences Chromatin IP Primers for GLTSCR2
Epigenetics:
|  | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GLTSCR2 |
Genomic Location: Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19q13.3 Ensembl cytogenetic band: 19q13.33 HGNC cytogenetic band: 19q13.3GLTSCR2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)

GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P048248: view genomic region
(about GC identifiers)
Start:
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48,248,793 bp from pter |
End:
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48,260,323 bp from pter |
Size:
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11,531 bases |
Orientation:
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plus strand |
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Proteins for GLTSCR2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
| UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5 (See
protein sequence)Recommended Name: Glioma tumor suppressor candidate region gene 2 protein Size: 478 amino acids; 54389 Da
Subunit: Interacts with HSV-1 early proteins ICP22 and ICP0
Subcellular location: Nucleus, nucleolus
Secondary accessions: Q9BTC6 Q9HAX6 Q9NPP1 Q9NPR4 Q9UFI2Explore the universe of human proteins at neXtProt for GLTSCR2: NX_Q9NZM5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9NZM5 GLTSCR2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_056525.2 ENSEMBL proteins: ENSP00000246802 Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table
GLTSCR2 for ontologies About GeneDecksing
GLTSCR2 Antibody Products: Assay Products for GLTSCR2: |
Protein
Domains / Families for GLTSCR2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
GLTSCR2 for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9NZM5ProtoNet protein and cluster: Q9NZM5 1 Blocks protein family: IPB011687 P60-like
UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5Similarity: Belongs to the GLTSCR2 family |
Function for GLTSCR2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GLTSCR2 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GLTSCR2 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for GLTSCR2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GLTSCR2  |
In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLTSCR2 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- |
GLTSCR2 for ontologies About GeneDecksing
4 GenomeRNAi human phenotypes for GLTSCR2:
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Pathways & Interactions for GLTSCR2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GLTSCR2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 13)
 5/17 Interacting proteins for GLTSCR2 (Q9NZM52, 3 ENSP000002468024) via UniProtKB, MINT, STRING, and/or I2D (see all 17)About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- |
GLTSCR2 for ontologies About GeneDecksing
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Drugs & Compounds for GLTSCR2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
Browse Tocris compounds for GLTSCR2 Search CenterWatch for drugs/clinical trials and news about GLTSCR2 / GSCR2 
|
Transcripts for GLTSCR2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
) About This Section
| REFSEQ mRNAs for GLTSCR2 gene: NM_015710.4 Unigene Cluster for GLTSCR2: Glioma tumor suppressor candidate region gene 2 Hs.421907 [show with all ESTs]Unigene Representative Sequence: BM5419891 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000246802(uc002phm.2 uc010elk.1)
Clone Products: |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for GLTSCR2 (see all 3) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for GLTSCR2 OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: GLTSCR2 (NM_015710) | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GLTSCR2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GLTSCR2  |
Additional cDNA sequence: AF161389.1 AF182076.1 AF296124.1 AK225915.1 AK297877.1 AK301117.1 AL359335.1 AL359336.1 AY535000.1 BC004229.2 BC006311.2 BC007248.1 BC010095.2 BC013203.1 BC013235.1 BC013307.1 BC014009.2 BC039869.1 NR_003048.1 24/35 DOTS entries (see all 35): DT.100856380 DT.95118197 DT.91898118 DT.91776802 DT.100678692 DT.95230703 DT.100810424 DT.100678702 DT.100678696 DT.91776772 DT.100678688 DT.100678677 DT.121467540 DT.100678689 DT.100678693 DT.100039484 DT.121467626 DT.450892 DT.95100684 DT.100039481 DT.91776770 DT.100697359 DT.95230588 DT.100678694 24/1598 AceView cDNA sequences (see all 1598): BU849205 BQ706682 BQ889677 BQ685691 BM810803 AA577022 BF725531 BU507727 AI383863 BU528675 CD107942 BM753025 BE731458 BU151613 BQ436103 BI962904 BM772345 AA954515 AL546312 CR605735 CR591907 BX351161 BQ064288 BQ638109 GeneLoc Exon Structure
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Expression for GLTSCR2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| GLTSCR2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this imageBioGPS CGAP TAG: --
About this image See GLTSCR2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for GLTSCR2
SOURCE GeneReport for Unigene cluster: Hs.421907 UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5Tissue specificity: Expressed at high levels in heart and pancreas, moderate levels in placenta, liver, skeletalmuscle, and kidney, and low levels in brain and lung SABiosciences Custom PCR Arrays for GLTSCR2
Primer Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for GLTSCR2 Browse OriGene validated miRNA SYBR primer pairs
| |  | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat GLTSCR2 | |  | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat GLTSCR2 | |  | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat GLTSCR2 | In Situ Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLTSCR2 |
Orthologs for GLTSCR2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for GLTSCR2 gene from 9/28 species (see all 28) About this table
ENSEMBL Gene Tree for GLTSCR2 (if available) TreeFam Gene Tree for GLTSCR2 (if available)  |
Paralogs for GLTSCR2 gene(Paralogs according to
1HomoloGene, 2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68) About This Section
| Paralogs for GLTSCR2 gene
1 SIMAP similar gene for GLTSCR2 using alignment to 6 protein entries: GSCR2_HUMAN (see all proteins):FLJ00085
GLTSCR2 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for GLTSCR2 PGOHUM00000247282
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Genomic Variants for GLTSCR2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical significance | Chr 19 pos | Sequence | # | AA Chg | Type | More | # | Allele freq | Pop | Total sample | More |
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HapMap Linkage Disequilibrium report for GLTSCR2 (48248793 - 48260323 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for GLTSCR2: --  | SABiosciences Cancer Mutation PCR Assays |
|  | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing GLTSCR2 |
|
Disorders
/ Diseases for GLTSCR2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
GLTSCR2 for disorders About GeneDecksing
OMIM gene information: 605691
OMIM disorders: --
6 diseases for GLTSCR2: About MalaCardsseborrheic keratosis keratosis herpes simplex kaposi's sarcoma sarcoma glioblastoma Export disorders for GLTSCR2 gene to outside databases
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Publications for GLTSCR2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for GLTSCR2 gene, integrated from 9 sources (see all 35): (articles sorted by number of sources associating them with GLTSCR2) | |  | Utopia: connect your pdf to the dynamic world of online information |
- A transcript map of the chromosome 19q-Arm glioma tumor suppressor region. (PubMed id 10708517)1, 2, 3 Smith J.S.... Jenkins R.B. (2000)
- A novel cellular protein, p60, interacting with both herpes simplex virus 1 regulatory proteins ICP22 and ICP0 is modified in a cell-type- specific manner and is recruited to the nucleus after infection. (PubMed id 10196275)1, 2, 9 Bruni R.... Roizman B. (1999)
- Critical role of PICT-1, a tumor suppressor candidate, in phosphatidylinositol 3,4,5-trisphosphate signals and tumorigenic transformation. (PubMed id 16971513)1, 3, 9 Okahara F....Maehama T. (2006)
- The putative tumor suppressor gene GLTSCR2 induces PT EN-modulated cell death. (PubMed id 17657248)1, 3, 9 Yim J.H....Park J.H. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Functional proteomic analysis of human nucleolus. (PubMed id 12429849)1, 2 Scherl A.... Diaz J.-J. (2002)
- Suppression of putative tumour suppressor gene GLTSCR2 expression in human glioblastomas. (PubMed id 18729076)1, 9 Kim Y.J....Park J.H. (2008)
- GLTSCR2/PICT-1, a putative tumor suppressor gene prod uct, induces the nucleolar targeting of the Kaposi's sarcoma-associated herpesv irus KS-Bcl-2 protein. (PubMed id 20042497)1, 9 Kalt I....Sarid R. (2010)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Nucleolar localization of GLTSCR2/PICT-1 is mediated b y multiple unique nucleolar localization sequences. (PubMed id 22292050)1 Kalt I....Sarid R. (2012)
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External Searches for GLTSCR2 gene
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
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Genome Databases showing GLTSCR2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing GLTSCR2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GLTSCR2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
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About This Section
| Patent Information for GLTSCR2 gene: Search GeneIP for patents involving GLTSCR2
GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products for GLTSCR2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
|
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 | |
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 | | GLTSCR2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLTSCR2 |
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| | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GLTSCR2 |
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