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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

GLTSCR2 Gene

protein-coding   GIFtS: 49
GCID: GC19P048248

glioma tumor suppressor candidate region gene 2

 Explore 6 diseases affiliated with
GLTSCR2 via our new
 Human Malady Compendium 
Biological research products
for GLTSCR2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Glioma Tumor Suppressor Candidate Region Gene 21 2
PICT-11 2
P601
PICT12
Glioma Tumor Suppressor Candidate Region Gene 2 Protein2
Protein Interacting With Carboxyl Terminus 12

External Ids:    HGNC: 43331   Entrez Gene: 299972   Ensembl: ENSG000001053737   OMIM: 6056915   UniProtKB: Q9NZM53   

Export aliases for GLTSCR2 gene to outside databases

Previous GC identifers: GC19P048895 GC19P048639 GC19P052924 GC19P052940 GC19P052934 GC19P044676


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for GLTSCR2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000019.9  NC_018930.1  NT_011109.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the GLTSCR2 gene promoter:
         E2F-4   E2F-3a   E2F-5   NF-1   NF-1/L   p53   E2F-2   E2F-1   E2F   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidGLTSCR2 promoter sequence
   Search SABiosciences Chromatin IP Primers for GLTSCR2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GLTSCR2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.3   Ensembl cytogenetic band:  19q13.33   HGNC cytogenetic band: 19q13.3

GLTSCR2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GLTSCR2 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P048248:  view genomic region     (about GC identifiers)

Start:
48,248,793 bp from pter      End:
48,260,323 bp from pter
Size:
11,531 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5 (See protein sequence)
Recommended Name: Glioma tumor suppressor candidate region gene 2 protein  
Size: 478 amino acids; 54389 Da
Subunit: Interacts with HSV-1 early proteins ICP22 and ICP0
Subcellular location: Nucleus, nucleolus
Secondary accessions: Q9BTC6 Q9HAX6 Q9NPP1 Q9NPR4 Q9UFI2

Explore the universe of human proteins at neXtProt for GLTSCR2: NX_Q9NZM5

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NZM5

  • GLTSCR2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_056525.2  
    ENSEMBL proteins: 
     ENSP00000246802  

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    Uscn Proteins for GLTSCR2

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular NAS10196275
    GO:0005730nucleolus IDA--
    GO:0043231intracellular membrane-bounded organelle IDA--


    GLTSCR2 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    GLTSCR2 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR011687 P60-like
     IPR011211 Gltscr2

    Graphical View of Domain Structure for InterPro Entry Q9NZM5

    ProtoNet protein and cluster: Q9NZM5

    1 Blocks protein family: IPB011687 P60-like

    UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5
    Similarity: Belongs to the GLTSCR2 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--


    GLTSCR2 for ontologies           About GeneDecksing


    4 GenomeRNAi human phenotypes for GLTSCR2:
     Decreased DCP1a protein expres  Decreased TP53 protein express  Decreased sensitivity to pacli  Decreased viability of wild-ty 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for GLTSCR2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 13)

    5/17 Interacting proteins for GLTSCR2 (Q9NZM52, 3 ENSP000002468024) via UniProtKB, MINT, STRING, and/or I2D (see all 17)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HAP1P542572, 3MINT-65664 I2D: score=4 
    SLX4Q8IY923, ENSP000002940084I2D: score=2 STRING: ENSP00000294008
    UIMC1Q96RL13, ENSP000003664344I2D: score=2 STRING: ENSP00000366434
    USP45Q70EL23, ENSP000003333764I2D: score=2 STRING: ENSP00000333376
    EIF2AK2P195253, ENSP000002330574I2D: score=1 STRING: ENSP00000233057
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--


    GLTSCR2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for GLTSCR2
    Search CenterWatch for drugs/clinical trials and news about GLTSCR2 / GSCR2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for GLTSCR2 gene: 
    NM_015710.4  

    Unigene Cluster for GLTSCR2:

    Glioma tumor suppressor candidate region gene 2
    Hs.421907  [show with all ESTs]
    Unigene Representative Sequence: BM541989
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000246802(uc002phm.2 uc010elk.1)

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    Additional cDNA sequence: 

    AF161389.1 AF182076.1 AF296124.1 AK225915.1 AK297877.1 AK301117.1 AL359335.1 AL359336.1 
    AY535000.1 BC004229.2 BC006311.2 BC007248.1 BC010095.2 BC013203.1 BC013235.1 BC013307.1 
    BC014009.2 BC039869.1 NR_003048.1 

    24/35 DOTS entries (see all 35):

    DT.100856380  DT.95118197  DT.91898118  DT.91776802  DT.100678692  DT.95230703  DT.100810424  DT.100678702 
    DT.100678696  DT.91776772  DT.100678688  DT.100678677  DT.121467540  DT.100678689  DT.100678693  DT.100039484 
    DT.121467626  DT.450892  DT.95100684  DT.100039481  DT.91776770  DT.100697359  DT.95230588  DT.100678694 

    24/1598 AceView cDNA sequences (see all 1598):

    BU849205 BQ706682 BQ889677 BQ685691 BM810803 AA577022 BF725531 BU507727 
    AI383863 BU528675 CD107942 BM753025 BE731458 BU151613 BQ436103 BI962904 
    BM772345 AA954515 AL546312 CR605735 CR591907 BX351161 BQ064288 BQ638109 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    GLTSCR2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See GLTSCR2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for GLTSCR2

    SOURCE GeneReport for Unigene cluster: Hs.421907

    UniProtKB/Swiss-Prot: GSCR2_HUMAN, Q9NZM5
    Tissue specificity: Expressed at high levels in heart and pancreas, moderate levels in placenta, liver, skeletal
    muscle, and kidney, and low levels in brain and lung

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLTSCR2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for GLTSCR2 gene from 9/28 species (see all 28)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Gltscr21 , 5 glioma tumor suppressor candidate region gene 21, 5 81.87(n)1
    82.43(a)1
      7 (8.64 cM)5
    680771  NM_133831.31  NP_598592.21 
     159378385 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    57(a)
    37(a)
    many → 1
    many → 1
    GL344061.1(56447-66974)
    AAWZ02038532(4001-10535)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.5272 Transcribed sequence with weak similarity to protein more 76.39(n)    CF151859.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1231781 zgc:123178 54.33(n)
    52.47(a)
      322404  NM_001079946.1  NP_001073415.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG17851 CG1785 46.08(n)
    32.03(a)
      31810  NM_132274.2  NP_572502.1 
    worm
    (Caenorhabditis elegans)
    Secernentea CELE_Y39B6A.331 Protein Y39B6A.33 41.96(n)
    31.98(a)
      180246  NM_171574.3  NP_741664.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes NOP531 Nop53p 36.29(n)
    26.81(a)
      855957   NP_015179.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT2G404301 hypothetical protein 38.93(n)
    25.95(a)
      818636  NM_001202792.1  NP_001189721.1 
    rice
    (Oryza sativa)
    Liliopsida --
    glioma tumor suppressor candidate region gene 2 pr...
    24(a)
    1 ↔ 1
    5(2541317-2545952)


    ENSEMBL Gene Tree for GLTSCR2 (if available)
    TreeFam Gene Tree for GLTSCR2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for GLTSCR2 gene
    1 SIMAP similar gene for GLTSCR2 using alignment to 6 protein entries:     GSCR2_HUMAN (see all proteins):
    FLJ00085

    GLTSCR2 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for GLTSCR2
    PGOHUM00000247282


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/352 NCBI SNPs in GLTSCR2 are shown (see all 352    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1895142881,2
    --48246915(+) GCGCAC/TCGTGC 1 -- us2k10--------
    rs754059661,2
    C,F,--48247015(+) GTTTCG/TCGGCT 1 -- us2k12Minor allele frequency- T:0.06WA EA 238
    rs19748171,2
    C,F,O,A,H,--48247045(-) TTTTCT/GGAGCG 1 -- us2k1 tfbs315Minor allele frequency- G:0.42NS NA EA WA 1074
    rs580792371,2
    C,--48247076(+) AAATCC/TCTGCC 1 -- us2k12Minor allele frequency- T:0.03WA 120
    rs1819329161,2
    --48247081(+) CCTGCC/TCAGGT 1 -- us2k10--------
    rs23342901,2
    C,F,O,A,H,--48247090(+) GTGATT/CCGGCG 1 -- us2k117Minor allele frequency- C:0.50EA NA NS WA 970
    rs1861811111,2
    --48247106(+) GTCTCG/TGGGCT 1 -- us2k10--------
    rs1478326811,2
    --48247138(+) TTAGGA/GCCTGT 1 -- us2k10--------
    rs1906496701,2
    --48247173(+) GATCCA/CGTTGA 1 -- us2k10--------
    rs1815439381,2
    --48247207(+) TGTCGC/TCTGCC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for GLTSCR2 (48248793 - 48260323 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for GLTSCR2: --

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    GLTSCR2 for disorders           About GeneDecksing

    OMIM gene information: 605691    OMIM disorders: --

    6 diseases for GLTSCR2:    About MalaCards
    seborrheic keratosis    keratosis    herpes simplex    kaposi's sarcoma
    sarcoma    glioblastoma


    Export disorders for GLTSCR2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for GLTSCR2 gene, integrated from 9 sources (see all 35):
    (articles sorted by number of sources associating them with GLTSCR2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A transcript map of the chromosome 19q-Arm glioma tumor suppressor region. (PubMed id 10708517)1, 2, 3 Smith J.S.... Jenkins R.B. (2000)
    2. A novel cellular protein, p60, interacting with both herpes simplex virus 1 regulatory proteins ICP22 and ICP0 is modified in a cell-type- specific manner and is recruited to the nucleus after infection. (PubMed id 10196275)1, 2, 9 Bruni R.... Roizman B. (1999)
    3. Critical role of PICT-1, a tumor suppressor candidate, in phosphatidylinositol 3,4,5-trisphosphate signals and tumorigenic transformation. (PubMed id 16971513)1, 3, 9 Okahara F....Maehama T. (2006)
    4. The putative tumor suppressor gene GLTSCR2 induces PT EN-modulated cell death. (PubMed id 17657248)1, 3, 9 Yim J.H....Park J.H. (2007)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Functional proteomic analysis of human nucleolus. (PubMed id 12429849)1, 2 Scherl A.... Diaz J.-J. (2002)
    7. Suppression of putative tumour suppressor gene GLTSCR2 expression in human glioblastomas. (PubMed id 18729076)1, 9 Kim Y.J....Park J.H. (2008)
    8. GLTSCR2/PICT-1, a putative tumor suppressor gene prod uct, induces the nucleolar targeting of the Kaposi's sarcoma-associated herpesv irus KS-Bcl-2 protein. (PubMed id 20042497)1, 9 Kalt I....Sarid R. (2010)
    9. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
    10. Nucleolar localization of GLTSCR2/PICT-1 is mediated b y multiple unique nucleolar localization sequences. (PubMed id 22292050)1 Kalt I....Sarid R. (2012)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 29997 HGNC: 4333 AceView: GLTSCR2 Ensembl:ENSG00000105373 euGenes: HUgn29997
    ECgene: GLTSCR2 H-InvDB: GLTSCR2

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
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    NameDescription
    PharmGKB entry for GLTSCR2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for GLTSCR2 Genetics and Cytogenetics in Oncology and Haematology

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