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GLI4 Gene

protein-coding   GIFtS: 45
GCID: GC08P144349

GLI Family Zinc Finger 4

(Previous names: GLI-Kruppel family member GLI4, glioma-associated oncogene...)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
GLI Family Zinc Finger 41 2     ZNF9282
HKR42 3 5     GLI-Kruppel Family Member GLI4 (Oncogene HKR4)2
Glioma-Associated Oncogene Family Zinc Finger 41 2     Zinc Finger Protein GLI42
Krueppel-Related Zinc Finger Protein 42 3     Protein HKR43
GLI-Kruppel Family Member GLI41     

External Ids:    HGNC: 43201   Entrez Gene: 27382   Ensembl: ENSG000002505717   OMIM: 1652805   UniProtKB: P100753   
ORGUL members:         

Export aliases for GLI4 gene to outside databases

Previous GC identifers: GC08P142542 GC08P9D0066 GC08P144104 GC08P144402 GC08P144420 GC08P144329 GC08P139603


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for GLI4 Gene:
GLI4 (GLI family zinc finger 4) is a protein-coding gene. An important paralog of this gene is ZFP41.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000008.10  NC_018919.2  NT_008046.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the GLI4 gene promoter:
         GR   Bach1   GR-beta   Bach2   Olf-1   STAT5A   NF-E2 p45   AREB6   GR-alpha   NF-E2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for GLI4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat GLI4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q24.3   Ensembl cytogenetic band:  8q24.3   HGNC cytogenetic band: 8q24.3

GLI4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
GLI4 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P144349:  view genomic region     (about GC identifiers)

Start:
144,349,603 bp from pter      End:
144,359,101 bp from pter
Size:
9,499 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: GLI4_HUMAN, P10075 (See protein sequence)
Recommended Name: Zinc finger protein GLI4  
Size: 376 amino acids; 41145 Da
Secondary accessions: Q96CK9

Explore the universe of human proteins at neXtProt for GLI4: NX_P10075

Explore proteomics data for GLI4 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See GLI4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_612474.1  
    ENSEMBL proteins: 
     ENSP00000430292   ENSP00000344727   ENSP00000429295   ENSP00000430987   ENSP00000427881  
     ENSP00000429514   ENSP00000345024  

    GLI4 Human Recombinant Protein Products:

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    Cloud-Clone Corp. Proteins for GLI4

     
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    antibodies-online proteins for GLI4 (4 products) 

     
    antibodies-online peptides for GLI4

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    antibodies-online antibodies for GLI4 (27 products) 

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    Cloud-Clone Corp. CLIAs for GLI4
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    antibodies-online kits for GLI4 (2 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR013087 Znf_C2H2/integrase_DNA-bd
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry P10075

    ProtoNet protein and cluster: P10075

    1 Blocks protein domain: IPB007086 C2H2-type zinc finger signature

    UniProtKB/Swiss-Prot: GLI4_HUMAN, P10075
    Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
    Similarity: Contains 7 C2H2-type zinc fingers


    Find genes that share domains with GLI4           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for GLI4:
    GLI-Kruppel family member GLI4

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003677DNA binding IEA--
    GO:0003700sequence-specific DNA binding transcription factor activity IBA--
    GO:0046872metal ion binding IEA--
         
    Find genes that share ontologies with GLI4           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for GLI4:
     Actin fiber cells  Increased gamma-H2AX phosphory 

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for GLI4

    miRNA
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    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLI4


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    GLI4_HUMAN, P10075: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with GLI4           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for GLI4
    Interactions:

        Search GeneGlobe Interaction Network for GLI4

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355regulation of transcription, DNA-templated IBA--
    GO:0008150biological_process ND--

    Find genes that share ontologies with GLI4           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for GLI4



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for GLI4 gene: 
    NM_138465.3  

    Unigene Cluster for GLI4:

    GLI family zinc finger 4
    Hs.400533  [show with all ESTs]
    Unigene Representative Sequence: NM_138465
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000519876 ENST00000522479 ENST00000521682 ENST00000344692 ENST00000517468
    ENST00000523522 ENST00000520021 ENST00000517530 ENST00000522033 ENST00000523812
    ENST00000340042(uc003yxx.3)
    miRNA
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    Inhib. RNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat GLI4
    Primer
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    OriGene qPCR primer pairs and template standards for GLI4
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    Pre-validated RT2 qPCR Primer Assay in human, mouse / rat GLI4
      QuantiTect SYBR Green Assays in human, mouse, rat GLI4
      QuantiFast Probe-based Assays in human, mouse, rat GLI4

    Additional mRNA sequence: BC014165.2 

    5 DOTS entries:

    DT.431707  DT.99994741  DT.120633795  DT.95263472  DT.95248218 

    Selected AceView cDNA sequences (see all 184):

    NM_138465 BQ574941 BM931804 AI803226 BM727950 CA488695 H61808 AI424303 
    AL831951 AI432630 BF593488 AW299994 AW137506 BE646304 CR621152 AI763124 
    AI597688 BF064174 BF805447 BE465758 AI829114 BG222826 AW500196 AI498703 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    GLI4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCACGTGTCC
    GLI4 Expression
    About this image

    GLI4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    GLI4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.400533
        Custom PCR Arrays for GLI4
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLI4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for GLI4 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    rat
    (Rattus norvegicus)
    Mammalia LOC1009119861 zinc finger protein GLI4-like 80.08(n)
    77.82(a)
      100911986  XM_003752188.2  XP_003752236.2 
    zebrafish
    (Danio rerio)
    Actinopterygii BX649341.46
    si:dkey-247i3.76
    si:dkey-247i3.7
    51(a)
    33(a)
    many ↔ many
    many ↔ many
    4(41151258-41151806) ENSDARG00000091035
    4(31590932-31606407) ENSDARG00000095997
    worm
    (Caenorhabditis elegans)
    Secernentea mnm-26
    Protein MNM-2 (mnm-2) mRNA, complete cds
    23(a)
    1 → many
    X(7422673-7424881) WBGene00003380


    ENSEMBL Gene Tree for GLI4 (if available)
    TreeFam Gene Tree for GLI4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for GLI4 gene
    ZFP412  ENSG000002646682  
    Selected SIMAP similar genes for GLI4 using alignment to 6 protein entries:     GLI4_HUMAN (see all proteins) (see all similar genes):
    DKFZp761O1618    ZNF232    ZNF566    DKFZp547L155    ZFP3    ZNF16
    ZNF383    HZF36    ZNF19    ZNF286A    ZNF286B    ZNF619
    ZNF620    ZNF551    DKFZp686K03205    ZFP1    ZFP28    ZNF287

    Find genes that share paralogs with GLI4           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for GLI4 (see all 312)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1391241451,2
    --144347632(+) ACTTGA/GGAGGC 1 -- us2k10--------
    rs1891412571,2
    --144347680(+) TTGCAG/TTGAGC 1 -- us2k10--------
    rs1810738471,2
    --144347686(+) TGAGCC/TGAGAT 1 -- us2k10--------
    rs1128299391,2
    C,F--144347771(+) TTTGCC/TTGGCT 1 -- us2k11Minor allele frequency- T:0.50CSA 2
    rs1863714811,2
    --144348099(+) AGATAC/TAGTAC 1 -- us2k10--------
    rs360204121,2
    C--144348131(+) TTTTT-/T/TT  
            
    GAGAC
    1 -- us2k11NA 2
    rs73880451,2
    C,F--144348189(+) gcgcaC/Atgcaa 1 -- us2k14Minor allele frequency- A:0.38NA WA CSA 8
    rs119965161,2
    C,F,A,H--144348350(+) cctctG/Tgtgat 1 -- us2k12Minor allele frequency- T:0.15CSA WA 120
    rs119965171,2
    C,F,A,H--144348351(+) ctctgG/Ttgatc 1 -- us2k12Minor allele frequency- T:0.15CSA WA 120
    rs1911741401,2
    --144348356(+) GTGATC/GCACCC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for GLI4 (144349603 - 144359101 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for GLI4 (see all 13):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2737983CNV Deletion23290073
    dgv1289e201CNV Deletion23290073
    esv2737988CNV Deletion23290073
    esv2737986CNV Deletion23290073
    esv2737987CNV Deletion23290073
    dgv7921n71CNV Loss21882294
    dgv7920n71CNV Loss21882294
    dgv7922n71CNV Loss21882294
    nsv891671CNV Loss21882294
    nsv891660CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing GLI4
    DNA2.0 Custom Variant and Variant Library Synthesis for GLI4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 165280    OMIM disorders: --


    Find genes that share disorders with GLI4           About GenesLikeMe


    Export disorders for GLI4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for GLI4 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with GLI4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The GLI-Kruppel family of human genes. (PubMed id 2850480)1, 2, 3 Ruppert J.M.... Vogelstein B. (Mol. Cell. Biol. 1988)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Assignment of the gene encoding human KrA1ppel-related zinc finger protein 4 (GLI4) to 8q24.3 by fluorescent in situ hybridization. (PubMed id 8641133)1, 9 Kas K....Van de Ven W.J. (Cytogenet. Cell Genet. 1996)
    4. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)
    5. Large-scale proteomics analysis of the human kinome. (PubMed id 19369195)2 Oppermann F.S.... Daub H. (Mol. Cell. Proteomics 2009)
    6. Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)2 Daub H.... Mann M. (Mol. Cell 2008)
    7. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    8. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (Cell 2006)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    10. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (Science 2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 2738 HGNC: 4320 AceView: GLI4andFLJ38705 Ensembl:ENSG00000250571 euGenes: HUgn2738
    ECgene: GLI4 H-InvDB: GLI4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for GLI4 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for GLI4 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for GLI4 gene:
    Search GeneIP for patents involving GLI4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat GLI4 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing GLI4
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