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Aliases for GLI4 Gene

Aliases for GLI4 Gene

  • GLI Family Zinc Finger 4 2 3 5
  • Glioma-Associated Oncogene Family Zinc Finger 4 2 3
  • Krueppel-Related Zinc Finger Protein 4 3 4
  • HKR4 3 4
  • GLI-Kruppel Family Member GLI4 (Oncogene HKR4) 3
  • GLI-Kruppel Family Member GLI4 2
  • Zinc Finger Protein GLI4 3
  • Protein HKR4 4
  • ZNF928 3

External Ids for GLI4 Gene

Previous GeneCards Identifiers for GLI4 Gene

  • GC08P142542
  • GC08P9D0066
  • GC08P144104
  • GC08P144402
  • GC08P144420
  • GC08P144329
  • GC08P144349
  • GC08P139603

Summaries for GLI4 Gene

GeneCards Summary for GLI4 Gene

GLI4 (GLI Family Zinc Finger 4) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZNF696.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLI4 Gene

Genomics for GLI4 Gene

Regulatory Elements for GLI4 Gene

Enhancers for GLI4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G143269 1.1 ENCODE dbSUPER 8.6 +2.3 2322 0.8 HDGF TBP FOXA2 AGO1 ARID4B RAD21 ZNF121 ZNF143 RELB IKZF2 MINCR GLI4
GH08G143245 1 ENCODE 7.7 -20.6 -20592 2.8 PKNOX1 ATF1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF48 TCF12 GLIS2 MINCR GLI4 FAM83H-AS1 TOP1MT ENSG00000264668 ZFP41
GH08G143275 1.8 FANTOM5 ENCODE dbSUPER 3.1 +11.6 11642 6.5 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 MINCR ZFP41 ZNF623 RHPN1 HGH1 FAM83H-AS1 TOP1MT ZC3H3 TIGD5 GLI4
GH08G143175 0.6 ENCODE 5.9 -90.5 -90507 2.3 RING1 CTCF NR2F1 AGO1 ZBTB40 FOXA1 FOSL1 POLR2A SUPT5H DEK JRK ZNF696 ZNF623 MINCR GLI4 MAF1 LOC100133669 LY6H GPIHBP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GLI4 on UCSC Golden Path with GeneCards custom track

Promoters for GLI4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for GLI4 Gene

143,267,433 bp from pter
143,276,931 bp from pter
9,499 bases
Plus strand

Genomic View for GLI4 Gene

Genes around GLI4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLI4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLI4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLI4 Gene

Proteins for GLI4 Gene

  • Protein details for GLI4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Zinc finger protein GLI4
    Protein Accession:
    Secondary Accessions:
    • Q96CK9

    Protein attributes for GLI4 Gene

    376 amino acids
    Molecular mass:
    41145 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GLI4 Gene

Post-translational modifications for GLI4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GLI4 Gene

No data available for DME Specific Peptides for GLI4 Gene

Domains & Families for GLI4 Gene

Gene Families for GLI4 Gene

Protein Domains for GLI4 Gene

Suggested Antigen Peptide Sequences for GLI4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with GLI4: view

Function for GLI4 Gene

Molecular function for GLI4 Gene

GENATLAS Biochemistry:
GLI-Kruppel family member GLI4

Gene Ontology (GO) - Molecular Function for GLI4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding IEA --
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with GLI4: view
genes like me logo Genes that share phenotypes with GLI4: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GLI4 Gene

Localization for GLI4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GLI4 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for GLI4 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for GLI4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with GLI4: view

Pathways & Interactions for GLI4 Gene

No Data Available

Interacting Proteins for GLI4 Gene

Gene Ontology (GO) - Biological Process for GLI4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IBA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with GLI4: view

No data available for Pathways by source and SIGNOR curated interactions for GLI4 Gene

Drugs & Compounds for GLI4 Gene

(2) Drugs for GLI4 Gene - From: ApexBio

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
GANT 58 Pharma GLI antagonist,novel and potent 0
GANT61 Pharma GLI antagonist, GLI antagonist; inhibits Hedgehog (Hh) signaling 0

(2) ApexBio Compounds for GLI4 Gene

Compound Action Cas Number
GANT 58 GLI antagonist,novel and potent 64048-12-0
GANT61 GLI antagonist 500579-04-4
genes like me logo Genes that share compounds with GLI4: view

Transcripts for GLI4 Gene

mRNA/cDNA for GLI4 Gene

Unigene Clusters for GLI4 Gene

GLI family zinc finger 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GLI4 Gene

No ASD Table

Relevant External Links for GLI4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for GLI4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GLI4 Gene

Protein differential expression in normal tissues from HIPED for GLI4 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for GLI4 Gene

Protein tissue co-expression partners for GLI4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of GLI4 Gene:


SOURCE GeneReport for Unigene cluster for GLI4 Gene:


Evidence on tissue expression from TISSUES for GLI4 Gene

  • Lung(4)
genes like me logo Genes that share expression patterns with GLI4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for GLI4 Gene

Orthologs for GLI4 Gene

This gene was present in the common ancestor of animals.

Orthologs for GLI4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia GLI4 34 35
  • 99.73 (n)
(Canis familiaris)
Mammalia GLI4 34 35
  • 84.31 (n)
(Bos Taurus)
Mammalia GLI4 34
  • 83.2 (n)
(Rattus norvegicus)
Mammalia LOC100911986 34
  • 80.08 (n)
(Monodelphis domestica)
Mammalia GLI4 35
  • 63 (a)
(Danio rerio)
Actinopterygii BX649341.4 35
  • 51 (a)
si:dkey-247i3.7 35
  • 33 (a)
(Caenorhabditis elegans)
Secernentea mnm-2 35
  • 23 (a)
Species where no ortholog for GLI4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GLI4 Gene

Gene Tree for GLI4 (if available)
Gene Tree for GLI4 (if available)

Paralogs for GLI4 Gene

Paralogs for GLI4 Gene

(491) SIMAP similar genes for GLI4 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with GLI4: view

Variants for GLI4 Gene

Sequence variations from dbSNP and Humsavar for GLI4 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000024007 -- 143,270,497(+) GCGCC(C/T)GTGGG intron-variant
rs1000074700 -- 143,270,318(+) CTCAG(A/G)TGGGC intron-variant
rs1000759240 -- 143,271,707(+) CGTGA(C/T)GTATC intron-variant
rs1000929052 -- 143,265,806(+) TCATC(A/C)CCAAG upstream-variant-2KB
rs1001333794 -- 143,272,703(+) CGAAT(A/G)TGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GLI4 Gene

Variant ID Type Subtype PubMed ID
dgv1237e201 CNV deletion 23290073
esv2737983 CNV deletion 23290073
esv2737986 CNV deletion 23290073
esv2737987 CNV deletion 23290073
esv2737988 CNV deletion 23290073
nsv1016726 CNV loss 25217958
nsv950010 CNV deletion 24416366

Variation tolerance for GLI4 Gene

Residual Variation Intolerance Score: 33.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.78; 89.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GLI4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GLI4 Gene

Disorders for GLI4 Gene

Relevant External Links for GLI4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for GLI4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLI4 Gene

Publications for GLI4 Gene

  1. The GLI-Kruppel family of human genes. (PMID: 2850480) Ruppert J.M. … Vogelstein B. (Mol. Cell. Biol. 1988) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Assignment of the gene encoding human KrA1ppel-related zinc finger protein 4 (GLI4) to 8q24.3 by fluorescent in situ hybridization. (PMID: 8641133) Kas K. … Van de Ven W.J. (Cytogenet. Cell Genet. 1996) 3 22 64
  4. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H. … Mohammed S. (J. Proteome Res. 2013) 4 64
  5. Large-scale proteomics analysis of the human kinome. (PMID: 19369195) Oppermann F.S. … Daub H. (Mol. Cell. Proteomics 2009) 4 64

Products for GLI4 Gene

Sources for GLI4 Gene

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