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Aliases for GLI4 Gene

Aliases for GLI4 Gene

  • GLI Family Zinc Finger 4 2 3 5
  • Glioma-Associated Oncogene Family Zinc Finger 4 2 3
  • Krueppel-Related Zinc Finger Protein 4 3 4
  • HKR4 3 4
  • GLI-Kruppel Family Member GLI4 (Oncogene HKR4) 3
  • GLI-Kruppel Family Member GLI4 2
  • Protein HKR4 4
  • ZNF928 3

External Ids for GLI4 Gene

Previous GeneCards Identifiers for GLI4 Gene

  • GC08P142542
  • GC08P9D0066
  • GC08P144104
  • GC08P144402
  • GC08P144420
  • GC08P144329
  • GC08P144349
  • GC08P139603

Summaries for GLI4 Gene

GeneCards Summary for GLI4 Gene

GLI4 (GLI Family Zinc Finger 4) is a Protein Coding gene. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is ZFP41.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLI4 Gene

Genomics for GLI4 Gene

Regulatory Elements for GLI4 Gene

Enhancers for GLI4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around GLI4 on UCSC Golden Path with GeneCards custom track

Promoters for GLI4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around GLI4 on UCSC Golden Path with GeneCards custom track

Genomic Location for GLI4 Gene

Chromosome:
8
Start:
143,267,433 bp from pter
End:
143,276,931 bp from pter
Size:
9,499 bases
Orientation:
Plus strand

Genomic View for GLI4 Gene

Genes around GLI4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GLI4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GLI4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLI4 Gene

Proteins for GLI4 Gene

  • Protein details for GLI4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P10075-GLI4_HUMAN
    Recommended name:
    Zinc finger protein GLI4
    Protein Accession:
    P10075
    Secondary Accessions:
    • Q96CK9

    Protein attributes for GLI4 Gene

    Size:
    376 amino acids
    Molecular mass:
    41145 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GLI4 Gene

Proteomics data for GLI4 Gene at MOPED

Post-translational modifications for GLI4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GLI4 Gene

No data available for DME Specific Peptides for GLI4 Gene

Domains & Families for GLI4 Gene

Gene Families for GLI4 Gene

Protein Domains for GLI4 Gene

Suggested Antigen Peptide Sequences for GLI4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P10075

UniProtKB/Swiss-Prot:

GLI4_HUMAN :
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
  • Contains 7 C2H2-type zinc fingers.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family.
Similarity:
  • Contains 7 C2H2-type zinc fingers.
genes like me logo Genes that share domains with GLI4: view

Function for GLI4 Gene

Molecular function for GLI4 Gene

GENATLAS Biochemistry:
GLI-Kruppel family member GLI4

Gene Ontology (GO) - Molecular Function for GLI4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with GLI4: view
genes like me logo Genes that share phenotypes with GLI4: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GLI4 Gene

Localization for GLI4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GLI4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GLI4 Gene COMPARTMENTS Subcellular localization image for GLI4 gene
Compartment Confidence
nucleus 3

No data available for Gene Ontology (GO) - Cellular Components for GLI4 Gene

Pathways & Interactions for GLI4 Gene

SuperPathways for GLI4 Gene

No Data Available

Interacting Proteins for GLI4 Gene

Gene Ontology (GO) - Biological Process for GLI4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GLI4 Gene

Drugs & Compounds for GLI4 Gene

No Compound Related Data Available

Transcripts for GLI4 Gene

mRNA/cDNA for GLI4 Gene

Unigene Clusters for GLI4 Gene

GLI family zinc finger 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GLI4 Gene

No ASD Table

Relevant External Links for GLI4 Gene

GeneLoc Exon Structure for
GLI4
ECgene alternative splicing isoforms for
GLI4

Expression for GLI4 Gene

mRNA expression in normal human tissues for GLI4 Gene

Protein differential expression in normal tissues from HIPED for GLI4 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for GLI4 Gene



SOURCE GeneReport for Unigene cluster for GLI4 Gene Hs.400533

genes like me logo Genes that share expression patterns with GLI4: view

Protein tissue co-expression partners for GLI4 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GLI4 Gene

Orthologs for GLI4 Gene

This gene was present in the common ancestor of animals.

Orthologs for GLI4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GLI4 36
  • 99 (a)
OneToOne
GLI4 35
  • 99.73 (n)
  • 99.47 (a)
oppossum
(Monodelphis domestica)
Mammalia GLI4 36
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GLI4 36
  • 79 (a)
OneToOne
GLI4 35
  • 84.31 (n)
  • 81.91 (a)
rat
(Rattus norvegicus)
Mammalia LOC100911986 35
  • 80.08 (n)
  • 77.82 (a)
cow
(Bos Taurus)
Mammalia GLI4 35
  • 83.2 (n)
  • 79.62 (a)
zebrafish
(Danio rerio)
Actinopterygii si:dkey-247i3.7 36
  • 33 (a)
ManyToMany
BX649341.4 36
  • 51 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea mnm-2 36
  • 23 (a)
OneToMany
Species with no ortholog for GLI4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GLI4 Gene

ENSEMBL:
Gene Tree for GLI4 (if available)
TreeFam:
Gene Tree for GLI4 (if available)

Paralogs for GLI4 Gene

Paralogs for GLI4 Gene

(491) SIMAP similar genes for GLI4 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with GLI4: view

Variants for GLI4 Gene

Sequence variations from dbSNP and Humsavar for GLI4 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1056148 - 143,276,211(+) GGGGG(A/G)CCAAG reference, missense
rs2293924 -- 143,275,805(-) TGGAC(A/G)GGGGG intron-variant
rs7838288 -- 143,272,756(+) CATGC(A/G)GCCCA intron-variant
rs7838319 -- 143,270,166(+) GCAAG(A/G)CCCCA intron-variant
rs7838836 -- 143,272,589(+) CTGCA(C/T)AGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GLI4 Gene

Variant ID Type Subtype PubMed ID
dgv7920n71 CNV Loss 21882294
nsv891656 CNV Gain 21882294
dgv7921n71 CNV Loss 21882294
nsv891660 CNV Loss 21882294
dgv7922n71 CNV Loss 21882294
dgv7923n71 CNV Loss 21882294
nsv891669 CNV Loss 21882294
nsv891671 CNV Loss 21882294
dgv1289e201 CNV Deletion 23290073
esv2737983 CNV Deletion 23290073
esv2737986 CNV Deletion 23290073
esv2737987 CNV Deletion 23290073
esv2737988 CNV Deletion 23290073

Variation tolerance for GLI4 Gene

Residual Variation Intolerance Score: 33.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.78; 89.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GLI4 Gene

HapMap Linkage Disequilibrium report
GLI4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GLI4 Gene

Disorders for GLI4 Gene

Relevant External Links for GLI4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLI4

No disorders were found for GLI4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLI4 Gene

Publications for GLI4 Gene

  1. The GLI-Kruppel family of human genes. (PMID: 2850480) Ruppert J.M. … Vogelstein B. (Mol. Cell. Biol. 1988) 2 3 4 67
  2. Assignment of the gene encoding human KrA1ppel-related zinc finger protein 4 (GLI4) to 8q24.3 by fluorescent in situ hybridization. (PMID: 8641133) Kas K. … Van de Ven W.J. (Cytogenet. Cell Genet. 1996) 3 23
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for GLI4 Gene

Sources for GLI4 Gene

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