GLI3 Gene
protein-coding GIFtS : 68
GC07M041970
GLI family zinc finger 3 (Previous names: Greig cephalopolysyndactyly syndrome, GLI-Kruppel family member GLI3, glioma-associated oncogene family zinc finger 3 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: GCPS, PHS )
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Aliases & Descriptions for GLI3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ACLS 1 , 2 , 5 GCPS 2 OTTHUMP00000025248 2 OTTHUMP00000159085 2 PAP-A 1 , 2 PAPA 1 , 2 , 5 PAPA1 1 , 2 PAPB 1 , 2 , 5 PHS 2 PPDIV 1 , 2
Descriptions DNA-binding protein 2 GLI family zinc finger 3 2 GLI-Kruppel family member GLI3 1 , 2 Greig cephalopolysyndactyly syndrome 1 glioma-associated oncogene family zinc finger 3 1 , 2 oncogene GLI3 2 zinc finger protein GLI3 2
Search outside databases for aliases for GLI3 genePrevious GC identifers: GC07M041650 GC07M041744 GC07M041776
Summaries for GLI3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for GLI3 : This gene encodes a protein which belongs to the C2H2-type zinc finger proteins subclass of the Glifamily. They are characterized as DNA-binding transcription factors and are mediators of Sonichedgehog (Shh) signaling. The protein encoded by this gene localizes in the cytoplasm andactivates patched Drosophila homolog (PTCH) gene expression. It is also thought to play a roleduring embryogenesis. Mutations in this gene have been associated with several diseases, includingGreig cephalopolysyndactyly syndrome, Pallister-Hall syndrome, preaxial polydactyly type IV, andpostaxial polydactyly types A1 and B. [provided by RefSeq] UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071 Function : Plays a role in limb and brain development. Implicated in the transduction of SHH signal(By similarity)
Gene Wiki entry for GLI3
Genomic Location for GLI3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the GLI3 gene Entrez Gene cytogenetic band: 7p13 Ensembl cytogenetic band: 7p14.1 HGNC cytogenetic band: 7p13 GLI3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M041970:
(about GC identifiers )
Start:
41,967,072 bp from pter
End:
42,243,137 bp from pter
Size:
276,066 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 42,040,400-42,316,454
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for GLI3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071 (See
protein sequence )Recommended Name: Zinc finger protein GLI3 Size : 1580 amino acids; 169849 Da
Subcellular location : Nucleus
Sequence caution : Sequence=AAA52564.1; Type=Frameshift; Positions=1549;
Secondary accessions : A4D1W1 O75219 Q17RW4 Q75MT0 Q75MU9 Q9UDT5 Q9UJ39
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_000159.3 ENSEMBL proteins: ENSP00000379255 ENSP00000379258 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for GLI3: Assays for GLI3:
Protein
Domains/ Families for GLI3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P10071 ProtoNet protein and cluster: P10071
1 Blocks protein family : IPB007086 C2H2-type zinc finger signature UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071 Similarity : Belongs to the GLI C2H2-type zinc-finger protein familySimilarity : Contains 5 C2H2-type zinc fingers
Gene Function for GLI3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000168 Applied Biosystems Silencer ® siRNAs for GLI3 Sigma-Aldrich siRNA and siRNA Panels for GLI3 Sigma-Aldrich shRNA Panels and shRNA for GLI3 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000168                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000168                                  untagged cDNA clone in CMV expression vector: NM_000168  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000168 UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071 Function : Plays a role in limb and brain development. Implicated in the transduction of SHH signal(By similarity)
Genatlas biochemistry entry for GLI3 :GLI-Kruppel family member GLI3 involved in the development of the CNS,craniofacialstructure,limbs,lung,trachea and oesophagus,with homology to Drosophila segment polarity geneCubitus interruptus (CI),more generatly acting both as an activator and a repressor as does CI insonic hedgehog signaling,binding CREBBP,also binding to GLT1 promoter and inducing itstranscription in response to SHH
15/23 MGI mutant phenotypes (inferred from 17 alleles ) (MGI details for Gli3) (see all 23
):5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for GLI3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for GLI3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for GLI3 5/8 Interacting proteins for GLI3 (P10071 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 5/34 Gene Ontology (GO) biological process terms (links to tree view) (see all 34
):
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Drugs & Compounds for GLI3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for GLI3
Browse Tocris compounds for GLI3 1 Novoseek chemical compound relationship for GLI3 gene
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Transcripts for GLI3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000168 Sigma-Aldrich siRNA and siRNA Panels for GLI3 Sigma-Aldrich shRNA Panels and shRNA for GLI3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000168
REFSEQ mRNAs for GLI3 gene: NM_000168.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000168
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000168                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000168                                  untagged cDNA clone in CMV expression vector: NM_000168  
Additional cDNA sequence: AK299299.1 AK308429.1 BC032660.2 BC113616.1 BC117168.1 M57609.1
8 DOTS entries : DT.412849 DT.95140913 DT.70100752 DT.309655 DT.91721200 DT.91746160 DT.92421910 DT.91991149
24/64 AceView cDNA sequences (see all 64
):BE221252 BG249639 AU123517 BU627224 CA406166 BQ668725 AA649654 BM552681 BU625637 BM459980 AW953518 BF194991 AI138649 AI863961 AU127370 AI860179 BC032660 BV197662 BX283816 BI915087 AU120131 BU631127 BX426100 BQ447085
highest scoring ESTs for GLI3 :M57609 BF194991 AA176085 AA203238 AA330409 AA418036 AA418124 AA649654 AA649716 AA649736
Unigene Cluster for GLI3: GLI family zinc finger 3 Hs.21509 [show with all ESTs ] Unigene Representative Sequence: NM_000168 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000395922
ENST00000395925
Expression for GLI3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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GLI3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for GLI3 1 / 2 / 3
8 probe-sets matching GLI3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAATACATTSOURCE GeneReport for Unigene cluster: Hs.21509 Expression variation in blood from EXPOLDB for GLI3
UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071 Tissue specificity : Is expressed in a wide variety of normal adult tissues, including lung, colon,spleen, placenta, testis, and myometrium
Orthologs for GLI3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for GLI3 gene from 5/12 species (see all 12
)
About this table Species with no ortholog for GLI3 ENSEMBL Gene Tree for GLI3 Paralogs for GLI3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for GLI3 gene GLI2 2
SNPs/Variants for GLI3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for GLI3 (up to first 250kb)
Disorders & Mutations for GLI3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 165240 disorders : 175700 146510 174700 174200 200990 241800 UniProtKB/Swiss-Prot: GLI3_HUMAN, P10071
Defects in GLI3 are the cause of Greig cephalo-poly-syndactyly syndrome (GCPS)[MIM:175700]; an autosomal dominant disorder affecting limb and craniofacial development. GCPS ischaracterized by pre- and postaxial polydactyly, syndactyly of fingers and toes, macrocephaly andhypertelorism Defects in GLI3 are a cause of Pallister-Hall syndrome (PHS) [MIM:146510]. Pallister-Hallsyndrome is characterized by a wide range of clinical manifestations. It mainly associates centralor postaxial polydactyly, syndactyly, and hypothalamic hamartoma. Malformations are frequent inthe viscera, e.g. anal atresia, bifid uvula, congenital heart malformations, pulmonary or renaldysplasia. It is an autosomal dominant disorder Defects in GLI3 are a cause of type A1/B postaxial polydactyly (PAPA1/PAPB) [MIM:174200,603596]. PAPA in humans is an autosomal dominant trait characterized by an extra digit in theulnar and/or fibular side of the upper and/or lower extremities. The extra digit is well formedand articulates with the fifth, or extra, metacarpal/metatarsal, and thus it is usually functional Defects in GLI3 are a cause of type IV preaxial polydactyly [MIM:174700]. Preaxialpolydactyly (i.e., polydactyly on the radial/tibial side of the hand/foot) covers a heterogeneousgroup of entities. In preaxial polydactyly type IV, the thumb shows only the mildest degree ofduplication, and syndactyly of various degrees affects fingers 3 and 4 Defects in GLI3 are the cause of acrocallosal syndrome (ACS) [MIM:200990]; alsoabbreviated ACLS. ACS is characterized by postaxial polydactyly, hallux duplication, macrocephaly,and absence of the corpus callosum, usually with severe developmental delay
10/16 Novoseek disease relationships for GLI3 gene (see all 16
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
greig cephalopolysyndactyly syndrome
98.44
17
10770668 (1), 7814032 (1), 12794692 (1), 17588959 (1) (see all 17 )
pallister-hall syndrome
97.44
17
9192261 (2), 9054938 (2), 18252217 (1), 17588959 (1) (see all 14 )
postaxial polydactyly, type a
94.01
5
12734547 (1), 9354785 (1), 10077605 (1), 15390181 (1)
acrocallosal syndrome
89.21
4
17937435 (1), 18154020 (1), 12414818 (1)
polydactyly
87.95
8
10441570 (2), 16865294 (1), 18272352 (1), 9302279 (1) (see all 7 )
polydactyly, postaxial
86.46
4
9042919 (1), 10441570 (1), 15778992 (1), 11973619 (1)
syndactyly
76.31
6
15811011 (2), 9302279 (1), 15390181 (1)
anomaly congenital multiple
68.95
2
18241058 (1), 17098889 (1)
hamartoma
67.59
3
18252217 (1), 18478223 (1), 18057317 (1)
developmental delay
61.00
1
15390181 (1)
About this table GeneTests: GLI3 Greig Cephalopolysyndactyly Syndrome Human Gene Mutation Database : GLI3 Human Genome Epidemiology Navigator: GLI3 (3 documents)
Medical News for GLI3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for GLI3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/142 PubMed articles for GLI3 gene (see all 142
): GLI3 encodes a 190-kilodalton protein with multiple regions of GLI similarity. (PubMed id 2118997) 1, 2, 3, 4 Ruppert J.M.... Kinzler K.W. (1990) Point mutations in human GLI3 cause Greig syndrome. (PubMed id 9302279) 1, 3, 4 Wild A....Grzeschik K.-H. (1997) De novo GLI3 mutation in acrocallosal syndrome: broadening the phenotypic spectrum of GLI3 defects and overlap with murine models. (PubMed id 12414818) 1, 3, 4 Elson E.... Black G.C.M. (2002) Point mutations throughout the GLI3 gene cause Greig cephalopolysyndactylysyndrome. (PubMed id 10441342) 1, 3, 4 Kalff-Suske M.... Grzeschik K.-H. (1999) The phenotypic spectrum of GLI3 morphopathies includes autosomal dominant preaxial polydactyly type-IV and postaxial polydactyly type- A/B; no phenotype prediction from the position of GLI3 mutations. (PubMed id 10441570) 1, 3, 4 Radhakrishna U.... Antonarakis S.E. (1999) Variable phenotype in Greig cephalopolysyndactyly syndrome: clinical and radiological findings in 4 independent families and 3 sporadic cases with identified GLI3 mutations. (PubMed id 12794692) 1, 3, 4 Debeer P....Kalff-Suske M. (2003) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 3, 4 Olsen J.V....Mann M. (2006) The DNA sequence of human chromosome 7. (PubMed id 12853948) 3, 4 Hillier L.W.... Wilson R.K. (2003) The GLI-Kruppel family of human genes. (PubMed id 2850480) 3, 4 Ruppert J.M.... Vogelstein B. (1988) Multisite protein kinase A and glycogen synthase kinase 3beta phosphorylation leads to Gli3 ubiquitination by SCFbetaTrCP. (PubMed id 16705181) 1, 3 Tempe D....Concordet J.P. (2006)
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Genome Databases showing GLI3
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing GLI3
(According to HUGE )
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Specialized Databases showing GLI3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for GLI3 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for GLI3:
Recombinant Proteins (Gli3 ) Antibodies (Gli3 )
Search Tocris compounds for GLI3
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Aliases for GLI3
Databases for GLI3
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Expression for GLI3
Function for GLI3
Location for GLI3
Medical News for GLI3
Orthologs for GLI3
Paralogs for GLI3
Pathways/Interactions for GLI3
Proteins for GLI3
Publications for GLI3
SNPs for GLI3
Search Box for GLI3
Services for GLI3
Summaries for GLI3
Technologies for GLI3
Transcripts for GLI3
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009