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Aliases & Descriptions for GLI2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| HPE9 1, 2, 5 | | THP 3 | | THP1 1, 2 | | THP2 1, 2 |
| | | Descriptions |
|---|
| GLI family zinc finger 2 2 | | GLI-Kruppel family member GLI2 1, 2 | | Tax helper protein 3 | | glioma-associated oncogene family zinc finger 2 1, 2 | | oncogene GLI2 2 | | tax helper protein 1 2 | | tax helper protein 2 2 | | tax-responsive element-2 holding protein 2 | | tax-responsive element-25-bp sequence binding protein 2 | | zinc finger protein GLI2 2 |
|
| | Search outside databases for aliases for GLI2 genePrevious GC identifers: GC02P118754 GC02P119470 GC02P121456 GC02P121645 |
Summaries for GLI2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GLI2: This gene encodes a protein which belongs to the C2H2-type zinc finger protein subclass of the Gli family. Members of this subclass are characterized as transcription factors which bind DNA through zinc finger motifs. These motifs contain conserved H-C links. Gli family zinc finger proteins are mediators of Sonic hedgehog (Shh) signaling and they are implicated as potent oncogenes in the embryonal carcinoma cell. The protein encoded by this gene localizes to the cytoplasm and activates patched Drosophila homolog (PTCH) gene expression. It is also thought to play a role during embryogenesis. The encoded protein is associated with several phenotypes- Greig cephalopolysyndactyly syndrome, Pallister-Hall syndrome, preaxial polydactyly type IV, postaxial polydactyly types A1 and B. [provided by RefSeq] UniProtKB/Swiss-Prot: GLI2_HUMAN, P10070Function: May play a role during embryogenesis. Binds to the DNA sequence 5'-GAACCACCCA-3' which is part of the TRE-2S regulatory element that augments the Tax-dependent enhancer of human T-cell leukemia virus type 1. Implicated in the transduction of SHH signal |
Genomic Location for GLI2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GLI2 gene 
Entrez Gene cytogenetic band: 2q14 Ensembl cytogenetic band: 2q14.2 HGNC cytogenetic band: 2q14GLI2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P121266:
(about GC identifiers)
Start:
|
121,266,327 bp from pter |
End:
|
121,466,321 bp from pter |
Size:
|
199,995 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000002.10 NT_022135.15
| Proteins for GLI2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GLI2_HUMAN, P10070 (See
protein sequence)Recommended Name: Zinc finger protein GLI2 Size: 1586 amino acids; 167783 Da
Subcellular location: Nucleus (Potential)
Sequence caution: Sequence=BAA03568.1; Type=Frameshift; Positions=754, 760; Sequence=BAA03569.1; Type=Frameshift; Positions=398, 410, 754, 760; Sequence=BAA25665.1; Type=Frameshift; Positions=398, 410; Sequence=BAA25667.1; Type=Frameshift; Positions=398, 410;
Secondary accessions: O60252 O60253 O60254 O60255 Q15590 Q15591 Q4JHT4Alternative splicing: 5 isoforms: P10070-5 P10070-1 P10070-2 P10070-3 P10070-4 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005261.2
ENSEMBL proteins: ENSP00000354586 ENSP00000354122 ENSP00000344473 ENSP00000312694
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for GLI2: Assays for GLI2: | Protein
Domains/ Families for GLI2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P10070
ProtoNet protein and cluster: P10070 1 Blocks protein family: IPB007086 C2H2-type zinc finger signature
UniProtKB/Swiss-Prot: GLI2_HUMAN, P10070Similarity: Belongs to the GLI C2H2-type zinc-finger protein familySimilarity: Contains 5 C2H2-type zinc fingers | Gene Function for GLI2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_030379
Applied Biosystems Silencer® siRNAs for GLI2
Sigma-Aldrich siRNA for GLI2  Sigma-Aldrich shRNA for GLI2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005270                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005270                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005270 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005270
UniProtKB/Swiss-Prot: GLI2_HUMAN, P10070Function: May play a role during embryogenesis. Binds to the DNA sequence 5'-GAACCACCCA-3' which is part of the TRE-2S regulatory element that augments the Tax-dependent enhancer of human T-cell leukemia virus type 1. Implicated in the transduction of SHH signalGenatlas biochemistry entry for GLI2:GLI-Kruppel family member GLI2,with homology to Drosophila segment polarity gene Cubitus interruptus,involved in the formation of lung,trachea and oesophagus15/21 MGI mutant phenotypes (inferred from 12 alleles ) (MGI details for Gli2) (see all 21
):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for GLI2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for GLI2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for GLI2 
5/56 Interacting proteins for GLI2 (ENSP000003545863) via UniProtKB, MINT, and/or STRING (see all 56
)About this table
5/32 Gene Ontology (GO) biological process terms (links to tree view) (see all 32
): About this table
|
Drugs & Compounds for GLI2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for GLI2 |
Browse Tocris compounds for GLI2 1 Novoseek chemical compound relationship for GLI2 gene
About this table
|
Transcripts for GLI2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 4): NM_030379
Sigma-Aldrich siRNA for GLI2  Sigma-Aldrich shRNA for GLI2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005270 REFSEQ mRNAs for GLI2 gene: NM_005270.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005270               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005270                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005270                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005270  Additional cDNA sequence: AB007295.1 AB007297.1 AB209354.1 AK300071.1 AY493737.1 AY493738.1 AY493739.1 BC111410.1 DQ004396.1 DQ004397.1 DQ004398.1 DQ086814.1 5 DOTS entries: DT.92418615 DT.102829768 DT.40113400 DT.441245 DT.95266956 24/42 AceView cDNA sequences (see all 42
):AI822132 N75386 AA620825 W79695 W01898 CA430900 AY493739 AW089214 AI089685 AI379285 AI204540 AW964168 AY493737 NM_030381 D14827 D14828 NM_030379 BX103004 AA378649 AB007296 AB007297 AA375858 AI075849 AI797248
highest scoring ESTs for GLI2:AA375858 AA378649 AB007295 AB007296 AB007297 AI797248 D14827 AA620825 AB007298 AB209354 Unigene Cluster for GLI2: GLI family zinc finger 2 Hs.111867 [show with all ESTs]Unigene Representative Sequence: NM_005270
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for GLI2 (see all 7
)
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8a | · | 8b | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for GLI2
4 Ensembl transcripts including schematic representations: ENST00000361492
ENST00000360874
ENST00000341310
ENST00000314490
|
Expression for GLI2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GLI2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GLI2
1 / 2 / 3 9 probe-sets matching GLI2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTCAACTTGT
SOURCE GeneReport for Unigene cluster: Hs.111867
Expression variation in blood from EXPOLDB for GLI2 |
Orthologs for GLI2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GLI2 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for GLI2
ENSEMBL Gene Tree for GLI2 | Paralogs for GLI2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GLI2 gene
- GLI32
|
SNPs/Variants for GLI2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GLI2 (up to first 250kb)
|
Disorders & Mutations for GLI2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 165230 UniProtKB/Swiss-Prot: GLI2_HUMAN, P10070
Defects in GLI2 are the cause of holoprosencephaly type 9 (HPE9) [MIM:610829]; also called pituitary anomalies with holoprosencephaly-like features. The primary features of this disease include defective anterior pituitary formation and pan-hypopituitarism, with or without overt forebrain cleavage abnormalities, and holoprosencephaly-like midfacial hypoplasia. Holoprosencephaly is the most common structural anomaly of the brain, in which the developing forebrain fails to correctly separate into right and left hemispheres. Holoprosencephaly is genetically heterogeneous and associated with several distinct facies and phenotypic variability8 Novoseek disease relationships for GLI2 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| leukemia t-cell |
79.52 |
15 |
8617746 (1), 9847380 (1), 19129196 (1), 7745688 (1) (see all 11) |
| carcinoma basal cell |
66.00 |
4 |
15175043 (1), 15140221 (1), 18264131 (1), 12786818 (1) |
| holoprosencephaly |
63.87 |
1 |
17103456 (1) |
| skin tumor |
29.83 |
2 |
12235001 (2) |
| hypoplasia |
27.99 |
1 |
9731531 (1) |
| glioblastoma |
27.38 |
1 |
12241103 (1) |
| cancer |
17.53 |
3 |
17638910 (1), 19158486 (1), 15520176 (1) |
| tumors |
8.37 |
15 |
18264131 (3), 15520176 (3), 12235001 (1), 15175043 (1) (see all 7) |
About this table
Human Gene Mutation Database: GLI2 Genetic Association Database: GLI2 Human Genome Epidemiology Navigator: GLI2 (2 documents)
|
Medical News for GLI2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for GLI2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/104 PubMed articles for GLI2 gene (see all 104
):- Cloning of novel isoforms of the human Gli2 oncogene and their activities to enhance tax-dependent transcription of the human T-cell leukemia virus type 1 genome. (PubMed id 9557682)1, 2, 3, 4 Tanimura A....Yoshida M. (1998)
- Loss-of-function mutations in the human GLI2 gene are associated with pituitary anomalies and holoprosencephaly-like features. (PubMed id 14581620)3, 4, 6 Roessler E....Muenke M. (2003)
- The GLI-Kruppel family of human genes. (PubMed id 2850480)2, 3, 4 Ruppert J.M.... Vogelstein B. (1988)
- A previously unidentified amino-terminal domain regulates transcriptional activity of wild-type and disease-associated human GLI2. (PubMed id 15994174)1, 3, 4 Roessler E.... Muenke M. (2005)
- A new regulatory element that augments the Tax-dependent enhancer of human T-cell leukemia virus type 1 and cloning of cDNAs encoding its binding proteins. (PubMed id 8350401)1, 3, 4 Tanimura A.... Yoshida M. (1993)
- Medical sequencing of candidate genes for nonsyndromic cleft lip and palate. (PubMed id 16327884)3, 6 Vieira A.R....Murray J.C. (2005)
- Gli2 upregulates cFlip and renders basal cell carcinoma cells resistant to death ligand-mediated apoptosis. (PubMed id 18264131)1, 3 Kump E....Erb P. (2008)
- GLI2 is expressed in normal human epidermis and BCC and induces GLI1 expression by binding to its promoter. (PubMed id 15175043)1, 3 Ikram M.S....Philpott M. (2004)
- Interaction of Gli2 with CREB protein on DNA elements in the long terminal repeat of human T-cell leukemia virus type 1 is responsible for transcriptional activation by tax protein. (PubMed id 10074179)1, 3 Dan S....Yoshida M. (1999)
- Induction of sonic hedgehog mediators by transforming growth factor-beta: Smad3-dependent activation of Gli2 and Gli1 expression in vitro and in vivo. (PubMed id 17638910)1, 3 Dennler S....Mauviel A. (2007)
|
Search for GLI2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GLI2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GLI2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GLI2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for GLI2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GLI2:

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Incremental update: 13 Oct 2009
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