GLDN Gene
protein-coding GIFtS : 52
GCID: GC15 P051633
gliomedin (Previous name: collomin ) (Previous symbol: COLM )
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Aliasesfor GLDN gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Gliomedin 1 UNC-1121 2 COLM1 2 3 Collomin1 CLOM1 2 Colmedin1 CRG-L21 2 CRGL22 5
Export aliases for GLDN gene to outside databases Previous GC identifers: GC15P049422 GC15P028463
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Summariesfor GLDN gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: GLDN_HUMAN, Q6ZMI3 Function : Plays a role in the formation of the nodes of Ranvier along myelinated axons. Probable NRCAM andNFASC/neurofascin ligand which may provide a glial positional clue required for the proper molecular assembly of the nodes of Ranvier (By similarity)
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Genomic Viewsfor GLDN gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000015.9 NC_018926.1 NT_010194.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GLDN gene promoter: AREB6 AhR PPAR-gamma1 AML1a COMP1 PPAR-gamma2 Evi-1 Other transcription factors Search SABiosciences Chromatin IP Primers for GLDN Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat GLDN
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 15q21.2 Ensembl cytogenetic band: 15q21.2 HGNC cytogenetic band: 15q15.3 GLDN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15P051633: view genomic region
(about GC identifiers )
Start:
51,633,713 bp from pter
End:
51,700,210 bp from pter
Size:
66,498 bases
Orientation:
plus strand
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Proteinsfor GLDN gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: GLDN_HUMAN, Q6ZMI3 (See
protein sequence )Recommended Name: Gliomedin Size : 551 amino acids; 58957 Da
Subunit : Interacts with NFASC/neurofascin and NRCAM (By similarity)
Subcellular location : Cell membrane; Single-pass type II membrane protein. Note=Localizes to the nodes of Ranvier (Bysimilarity)
Secondary accessions : Q6UXZ7 Q7Z359Alternative splicing : 2 isoforms : Q6ZMI3-1 Q6ZMI3-2 Explore the universe of human proteins at neXtProt for GLDN: NX_Q6ZMI3 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6ZMI3 GLDN Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_861454.2 ENSEMBL proteins: ENSP00000335196 ENSP00000379681 ENSP00000453433 Human Recombinant Protein Products: Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view) : About this table
GLDN for ontologies About GeneDecksing GLDN Antibody Products: Assay Products for GLDN:
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Protein
Domains / Familiesfor GLDN gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GLDN for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6ZMI3 ProtoNet protein and cluster: Q6ZMI3
3 Blocks protein families : IPB003112 Olfactomedin-like IPB008160 Collagen triple helix repeat IPB008161 Collagen helix repeat UniProtKB/Swiss-Prot: GLDN_HUMAN, Q6ZMI3 Domain : The olfactomedin-like domain mediates NFASC/neurofascin and NRCAM binding (By similarity)Similarity : Contains 2 collagen-like domainsSimilarity : Contains 1 olfactomedin-like domain
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Functionfor GLDN gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: GLDN_HUMAN, Q6ZMI3 Function : Plays a role in the formation of the nodes of Ranvier along myelinated axons. Probable NRCAM andNFASC/neurofascin ligand which may provide a glial positional clue required for the proper molecular assembly of the nodes of Ranvier (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GLDN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GLDNOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: GLDN (NM_181789 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GLDN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GLDN
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLDN
2 GenomeRNAi human phenotypes for GLDN :Animal Models: Mouse knock-out Gldn tm1Pele for GLDN 3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Gldn) :
GLDN for phenotypes About GeneDecksing
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Pathways & Interactionsfor GLDN gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GLDN 1 Interacting protein for GLDN (Q6ZMI3 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007399 nervous system development
IEA -- GO:0030154 cell differentiation
IEA --
GLDN for ontologies About GeneDecksing
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Drugs & Compoundsfor GLDN gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for GLDN Search CenterWatch for drugs/clinical trials and news about GLDN
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Transcriptsfor GLDN gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for GLDN gene: NM_181789.2 Unigene Cluster for GLDN:
Gliomedin Hs.526441 [show with all ESTs ] Unigene Representative Sequence: NM_181789 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000335449 (uc002aba.3 ) ENST00000560215 ENST00000558286 ENST00000560690 ENST00000559317 ENST00000464150 (uc010bez.1 ) ENST00000396399 (uc002abb.3 )ENST00000561194 ENST00000558426 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GLDN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GLDNOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: GLDN (NM_181789 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GLDN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GLDN
Additional cDNA sequence: AK095128.1 AK172756.1 AK308933.1 AK310755.1 AY358144.1 BC113397.1 BC113399.1 BX538105.1
5 DOTS entries : DT.91974209 DT.406569
DT.101963424 DT.40112906 DT.121054945 24/43 AceView cDNA sequences (see all 43 ):
BX337184 CR590325 BX101284 BI756736 BX387035 AI199825 AA969362 AW148870 BI755831 AI186284 BX324705 F35834 BQ879885 BI551391 BX324704 AK095128 F26898 AK023623 NM_181789 AK172756 AU138192 BG623119 BX538105 AY358144 GeneLoc Exon Structure 5 Alternative Splicing Database (ASD) splice patterns (SP) for GLDN About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 SP1 :                             SP2 :         -                     SP3 :     -   -   -                     SP4 :       -   -                     SP5 :                            
ECgene alternative splicing isoforms for GLDN
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Expression for GLDN gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GLDN expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTCACCACTG
About this image GLDN expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See GLDN Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for GLDN SOURCE GeneReport for Unigene cluster: Hs.526441 UniProtKB/Swiss-Prot: GLDN_HUMAN, Q6ZMI3 Tissue specificity : Specifically expressed in spinal cord, brain, placenta and sciatic nerve. More abundant inperipheral than central nervous system SABiosciences Custom PCR Arrays for GLDN Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for GLDNBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat GLDN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat GLDN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat GLDN In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLDN
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Orthologsfor GLDN gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for GLDN gene from 5/15 species (see all 15 ) About this table
ENSEMBL Gene Tree for GLDN (if available)TreeFam Gene Tree for GLDN (if available)
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Paralogsfor GLDN gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for GLDN gene OLFM3 2 OLFML3 2 OLFML2A 2 OLFM2 2 OLFM1 2 OLFM4 2 MYOC 2 OLFML2B 2 OLFML1 2 11 SIMAP similar genes for GLDN using alignment to 3 protein entries: GLDN_HUMAN (see all proteins ):OLFM1 COL5A1 SCARA5 COL4A3 MARCO COL13A1 COLEC11 COL24A1 COL25A1 DKFZp434L081 COL6A5
GLDN for paralogs About GeneDecksing
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Genomic Variantsfor GLDN gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 15 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for GLDN (51633713 - 51700210 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for GLDN 3 CNVs : 3081 8798 3963
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing GLDN
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Disorders
/ Diseasesfor GLDN gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GLDN for disorders About GeneDecksing
OMIM gene information: 608603
OMIM disorders : --3 diseases for GLDN : About MalaCards demyelinating polyneuropathy neuritis polyneuropathy 1 disease from the University of Copenhagen DISEASES database for GLDN :Demyelinating polyneuropathy Export disorders for GLDN gene to outside databases
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Publicationsfor GLDN gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for GLDN gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with GLDN) Utopia : connect your pdf to the dynamic world of online information
Gliomedin mediates Schwann cell-axon interaction and the molecular assembly of the nodes of Ranvier. (PubMed id 16039564) 1 , 2 , 3, 9 Eshed Y.... Peles E. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Identification and characterization of CRG-L2, a new marker for liver tumor development. (PubMed id 12642876) 1 , 3 Graveel C.R....Farnham P.J. (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) Nodal proteins are target antigens in Guillain-Barre s yndrome. (PubMed id 22462667) 1 Devaux J.J....Yuki N. (2012) Fibronectin type III-like domains of neurofascin-186 p rotein mediate gliomedin binding and its clustering at the developing nodes of R anvier. (PubMed id 22009740) 1 Labasque M....Faivre-Sarrailh C. (2011) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Secreted gliomedin is a perinodal matrix component of peripheral nerves. (PubMed id 17485493) 9 Eshed Y....Peles E. (2007) Cleavage and oligomerization of gliomedin, a transmembrane collagen required for node of ranvier formation. (PubMed id 17293346) 9 Maertens B....Koch M. (2007)
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External Searches for GLDN gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GLDN gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GLDN gene
(According to HUGE )
About This Section --
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Specialized Databases showing GLDN gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for GLDN gene: Search GeneIP for patents involving GLDN Licensable Technologies for GLDN gene: GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GLDN gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for GLDN OriGene shRNA RFP for GLDN OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for GLDN OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for GLDN Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for GLDN OriGene 3'-UTR Clone for GLDN OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GLDN OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GLDN Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for GLDN OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for GLDN OriGene Custom Protein Services for GLDN OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat GLDN QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing GLDN QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat GLDN QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat GLDN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat GLDN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat GLDN
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GLDN Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GLDN
ThermoFisher Antibodies for GLDN
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GLDN
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Aliases for GLDN
Databases for GLDN
Disorders / Diseases for GLDN
Domains / Families for GLDN
Drugs / Compounds for GLDN
Expression for GLDN
Function for GLDN
Genomic Views for GLDN
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Orthologs for GLDN
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Pathways / Interactions for GLDN
Products for GLDN
Proteins for GLDN
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Transcripts for GLDN
Variants for GLDN
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