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Aliases for GKN2 Gene

Aliases for GKN2 Gene

  • Gastrokine 2 2 3
  • Down Regulated In Gastric Cancer GDDR 2 3
  • Trefoil Factor Interactions(Z) 1 3 4
  • BRICHOS Domain Containing 1B 2 3
  • Blottin 3 4
  • TFIZ1 3 4
  • GDDR 3 4
  • Down-Regulated In Gastric Cancer GDDR 3
  • Down-Regulated In Gastric Cancer 4
  • BRICD1B 3
  • VLTI465 3
  • PRO813 3
  • BLOT 4

External Ids for GKN2 Gene

Previous GeneCards Identifiers for GKN2 Gene

  • GC02M069025
  • GC02M069172

Summaries for GKN2 Gene

GeneCards Summary for GKN2 Gene

GKN2 (Gastrokine 2) is a Protein Coding gene. Diseases associated with GKN2 include internuclear ophthalmoplegia and gastric cancer. An important paralog of this gene is GKN1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GKN2 Gene

Genomics for GKN2 Gene

Regulatory Elements for GKN2 Gene

Genomic Location for GKN2 Gene

Chromosome:
2
Start:
68,945,232 bp from pter
End:
68,952,970 bp from pter
Size:
7,739 bases
Orientation:
Minus strand

Genomic View for GKN2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GKN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GKN2 Gene

Proteins for GKN2 Gene

  • Protein details for GKN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XP6-GKN2_HUMAN
    Recommended name:
    Gastrokine-2
    Protein Accession:
    Q86XP6
    Secondary Accessions:
    • Q6UWS6

    Protein attributes for GKN2 Gene

    Size:
    184 amino acids
    Molecular mass:
    20487 Da
    Quaternary structure:
    • Interacts with TFF2 (By similarity). Heterodimer with TFF1; disulfide linked.

neXtProt entry for GKN2 Gene

Proteomics data for GKN2 Gene at MOPED

Post-translational modifications for GKN2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GKN2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GKN2 Gene

Domains & Families for GKN2 Gene

Gene Families for GKN2 Gene

Protein Domains for GKN2 Gene

Suggested Antigen Peptide Sequences for GKN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86XP6

UniProtKB/Swiss-Prot:

GKN2_HUMAN :
  • Contains 1 BRICHOS domain.
Domain:
  • Contains 1 BRICHOS domain.
genes like me logo Genes that share domains with GKN2: view

Function for GKN2 Gene

genes like me logo Genes that share phenotypes with GKN2: view

Animal Model Products

miRNA for GKN2 Gene

miRTarBase miRNAs that target GKN2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GKN2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for GKN2 Gene

Localization for GKN2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GKN2 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GKN2 Gene COMPARTMENTS Subcellular localization image for GKN2 gene
Compartment Confidence
extracellular 5
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for GKN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0045178 basal part of cell IEA --
genes like me logo Genes that share ontologies with GKN2: view

Pathways & Interactions for GKN2 Gene

SuperPathways for GKN2 Gene

No Data Available

Interacting Proteins for GKN2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000329292%0d%0a9606.ENSP00000291527%0d%0a
Selected Interacting proteins: Q86XP6-GKN2_HUMAN ENSP00000329292 for GKN2 Gene via I2D STRING

Gene Ontology (GO) - Biological Process for GKN2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GKN2 Gene

Drugs & Compounds for GKN2 Gene

No Compound Related Data Available

Transcripts for GKN2 Gene

mRNA/cDNA for GKN2 Gene

Unigene Clusters for GKN2 Gene

Gastrokine 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GKN2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GKN2 Gene

No ASD Table

Relevant External Links for GKN2 Gene

GeneLoc Exon Structure for
GKN2
ECgene alternative splicing isoforms for
GKN2

Expression for GKN2 Gene

mRNA expression in normal human tissues for GKN2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GKN2 Gene

This gene is overexpressed in Stomach (x50.2).

Protein differential expression in normal tissues from HIPED for GKN2 Gene

This gene is overexpressed in Cardia (51.4) and Stomach (16.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GKN2 Gene



SOURCE GeneReport for Unigene cluster for GKN2 Gene Hs.16757

mRNA Expression by UniProt/SwissProt for GKN2 Gene

Q86XP6-GKN2_HUMAN
Tissue specificity: Expressed in gastric mucosa.
genes like me logo Genes that share expression patterns with GKN2: view

Protein tissue co-expression partners for GKN2 Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for GKN2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GKN2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GKN2 35
  • 83.88 (n)
  • 73.91 (a)
GKN2 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GKN2 35
  • 81.4 (n)
  • 73.48 (a)
GKN2 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gkn2 35
  • 76.45 (n)
  • 69.57 (a)
Gkn2 16
Gkn2 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GKN2 35
  • 98.91 (n)
  • 97.28 (a)
GKN2 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gkn2 35
  • 77.54 (n)
  • 73.37 (a)
oppossum
(Monodelphis domestica)
Mammalia GKN2 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves GKN2 35
  • 55.49 (n)
  • 40.22 (a)
GKN2 36
  • 38 (a)
OneToOne
Species with no ortholog for GKN2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for GKN2 Gene

ENSEMBL:
Gene Tree for GKN2 (if available)
TreeFam:
Gene Tree for GKN2 (if available)

Paralogs for GKN2 Gene

Paralogs for GKN2 Gene

(2) SIMAP similar genes for GKN2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with GKN2: view

Variants for GKN2 Gene

Sequence variations from dbSNP and Humsavar for GKN2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs7600753 -- 68,953,261(+) GAGTT(A/G)GGCCC upstream-variant-2KB
rs10048657 -- 68,948,201(+) agatc(A/G)cacca intron-variant
rs10048698 -- 68,945,779(+) GCCAC(A/G)TTTAG intron-variant
rs10175263 -- 68,951,984(+) GCTGA(C/T)AGTCT intron-variant
rs10175379 -- 68,952,123(+) TGCAA(C/T)GTGGA intron-variant

Variation tolerance for GKN2 Gene

Residual Variation Intolerance Score: 54.82% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.38; 63.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GKN2 Gene

HapMap Linkage Disequilibrium report
GKN2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GKN2 Gene

Disorders for GKN2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for GKN2 Gene - From: DISEASES, NovoSeek, and GeneCards

- elite association
Search GKN2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for GKN2

Genetic Association Database (GAD)
GKN2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GKN2
genes like me logo Genes that share disorders with GKN2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GKN2 Gene

Publications for GKN2 Gene

  1. Identification of blottin: a novel gastric trefoil factor family-2 binding protein. (PMID: 16888721) Otto W.R. … Oien K.A. (Proteomics 2006) 2 23 67
  2. Interaction between TFF1, a gastric tumor suppressor trefoil protein, and TFIZ1, a Brichos domain-containing protein with homology to SP- C. (PMID: 15924415) Westley B.R. … May F.E.B. (Biochemistry 2005) 2 23 67
  3. Study on novel gene GDDR related to gastric cancer. (PMID: 15774165) Du J.J. … Gao Z.Q. (Zhonghua Wai Ke Za Zhi 2005) 2 23 67
  4. The trefoil factor interacting protein TFIZ1 binds the trefoil protein TFF1 preferentially in normal gastric mucosal cells but the co-expression of these proteins is deregulated in gastric cancer. (PMID: 18722547) May F.E. … Westley B.R. (Int. J. Biochem. Cell Biol. 2009) 23 67
  5. Cytokine regulation of the trefoil factor family binding protein GKN2 (GDDR/TFIZ1/blottin) in human gastrointestinal epithelial cells. (PMID: 17595528) Baus-Loncar M. … Blin N. (Cell. Physiol. Biochem. 2007) 23 67

Products for GKN2 Gene

Sources for GKN2 Gene

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