GK5 Gene
protein-coding GIFtS : 50
GCID: GC03 M141876
glycerol kinase 5 (putative)
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Aliasesfor GK5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases Glycerol Kinase 5 (Putative) 1 2 EC 2.7.1.303 8 Glycerokinase 52 3 MGC405791 ATP:Glycerol 3-Phosphotransferase 52 3 Putative Glycerol Kinase 52 GK 52 3
External Ids: HGNC: 28635 1 Entrez Gene: 256356 2 Ensembl: ENSG00000175066 7 UniProtKB: Q6ZS86 3 ORGUL members: NONCODE:n409152
Export aliases for GK5 gene to outside databases Previous GC identifers: GC03M143359 GC03M139249
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Summariesfor GK5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor GK5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_005612.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the GK5 gene promoter: HOXA9 HOXA9B COUP MyoD Egr-4 Meis-1b COUP-TF Pax-4a Meis-1 ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for GK5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GK5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3q23 Ensembl cytogenetic band: 3q23 HGNC cytogenetic band: 3q23 GK5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M141876: view genomic region
(about GC identifiers )
Start:
141,876,369 bp from pter
End:
141,944,449 bp from pter
Size:
68,081 bases
Orientation:
minus strand
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Proteinsfor GK5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: GLPK5_HUMAN, Q6ZS86 (See
protein sequence )Recommended Name: Putative glycerol kinase 5 Size : 529 amino acids; 59156 Da
Secondary accessions : B2R9I2 D3DNG2 Q8N2A7 Q8N5E6Alternative splicing : 3 isoforms : Q6ZS86-1 Q6ZS86-2 Q6ZS86-3 Explore the universe of human proteins at neXtProt for GK5: NX_Q6ZS86 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6ZS86 4/9 DME Specific Peptides for GK5 (Q6ZS86 ) (see all 9 )GK5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001034636.1 ENSEMBL proteins: ENSP00000420312 ENSP00000419031 ENSP00000418001 ENSP00000417153 ENSP00000420593 ENSP00000419651 ENSP00000418239 ENSP00000440860 Human Recombinant Protein Products: GK5 Antibody Products: Assay Products for GK5:
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Protein
Domains / Familiesfor GK5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
GK5 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6ZS86 ProtoNet protein and cluster: Q6ZS86
1 Blocks protein family : IPB000577 Carbohydrate kinase UniProtKB/Swiss-Prot: GLPK5_HUMAN, Q6ZS86 Similarity : Belongs to the FGGY kinase family
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Functionfor GK5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: GLPK5_HUMAN, Q6ZS86 Catalytic activity : ATP + glycerol = ADP + sn-glycerol 3-phosphateEnzyme Number (IUBMB): EC 2.7.1.30 1 2
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GK5 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GK5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: GK5 (NM_001039547 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GK5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GK5
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GK5
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004370 glycerol kinase activity
IEA -- GO:0005524 ATP binding
IEA -- GO:0016773 phosphotransferase activity, alcohol group as acceptor
-- --
GK5 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for GK5 :Animal Models: 1 MGI phenotypic allele for Gk5 (no phenotypes)
GK5 for phenotypes About GeneDecksing
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Pathways & Interactionsfor GK5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 glycerol degradation I
1 BioSystems Pathway for GK5 UniProtKB/Swiss-Prot: GLPK5_HUMAN, Q6ZS86 Pathway : Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol:step 1/1 Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for GK5 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for GK5 (ENSP00000418001 4 ) via UniProtKB, MINT, STRING , and/or I2D
About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005975 carbohydrate metabolic process
-- -- GO:0019563 glycerol catabolic process
IEA --
GK5 for ontologies About GeneDecksing
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Drugs & Compoundsfor GK5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for GK5 2 HMDB Compounds for GK5 About this table Search CenterWatch for drugs/clinical trials and news about GK5 / GLPK5
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Transcriptsfor GK5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for GK5 gene (2 alternative transcripts): NM_152776.1 NM_001039547.2 Unigene Clusters for GK5:
Glycerol kinase 5 (putative) Hs.135904 [show with all ESTs ] , Hs.744309 [show with all ESTs ] Unigene Representative Sequences: AK130469 , NR_033289 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000492097 (uc010hus.2 ) ENST00000480757 ENST00000460515 (uc003eup.1 )ENST00000392993 (uc003euq.2 ) ENST00000463349 ENST00000486459 ENST00000460630 ENST00000466685 ENST00000460544 ENST00000487672 (uc010hut.2 ) ENST00000472759 ENST00000489085 ENST00000544571 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GK5 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GK5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: GK5 (NM_001039547 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for GK5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GK5
Additional cDNA sequence: AK090901.1 AK127641.1 AK310761.1 AK313792.1 BX648359.1 NR_033289.1
4 DOTS entries : DT.75116731 DT.40233186
DT.75189915 DT.75165086 24/64 AceView cDNA sequences (see all 64 ):
AW769016 BM685050 AW299704 AI250691 AL567263 CR598125 AA648374 AX746669 BG697446 CA412196 BU170345 AK127641 AK090901 AA347327 AI866260 BM997156 BQ632763 BX505625 BE875664 BX648359 BM782446 BC032470 BX385143 BX509538 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for GK5 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 SP1 :           -             -   -                 SP2 :             -   -   -   -   -   -                   SP3 :                                        
ECgene alternative splicing isoforms for GK5
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Expression for GK5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GK5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTTTCACTTT
About this image GK5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Ovary Antral Follicle Mature Granulosa Cells Ovary Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See GK5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for GK5 SOURCE GeneReport for Unigene clusters: Hs.135904 Hs.744309 SABiosciences Custom PCR Arrays for GK5 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for GK5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat GK5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat GK5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat GK5 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GK5
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Orthologsfor GK5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the last universal common ancestor (LUCA).
Orthologs for GK5 gene from 8/31 species (see all 31 ) About this table
ENSEMBL Gene Tree for GK5 (if available)TreeFam Gene Tree for GK5 (if available)
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Paralogsfor GK5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for GK5 gene GK 2 GK2 2 3 SIMAP similar genes for GK5 using alignment to 5 protein entries: GLPK5_HUMAN (see all proteins ):GK GK3P GK2
GK5 for paralogs About GeneDecksing
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Genomic Variantsfor GK5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for GK5 (141876369 - 141944449 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 6 variations for GK5 6 CNVs : 8431 50949 8430 53086 2476 3451
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing GK5
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Disorders
/ Diseasesfor GK5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
GK5 for disorders About GeneDecksing 1 disease for GK5 : About MalaCards alcoholism Export disorders for GK5 gene to outside databases
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Publicationsfor GK5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for GK5 gene integrated from 9 sources : (articles sorted by number of sources associating them with GK5) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 , 3 Strausberg R.L....Marra M.A. (2002) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997) 2 Muzny D.M....Gibbs R.A. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for GK5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing GK5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing GK5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing GK5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for GK5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for GK5 gene: Search GeneIP for patents involving GK5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor GK5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for GK5 OriGene shRNA RFP for GK5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for GK5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for GK5 OriGene Protein Over-expression Lysate for GK5 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for GK5 OriGene 3'-UTR Clone for GK5 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for GK5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for GK5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for GK5 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for GK5 OriGene Custom Protein Services for GK5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat GK5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing GK5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat GK5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat GK5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat GK5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat GK5
Search Tocris compounds for GK5
GK5 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for GK5
Search ThermoFisher Antibodies for GK5
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat GK5
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