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Aliases for GINM1 Gene

Aliases for GINM1 Gene

  • Glycoprotein Integral Membrane 1 2 3
  • C6orf72 3 4
  • Chromosome 6 Open Reading Frame 72 2
  • DJ12G14.2 3

External Ids for GINM1 Gene

Previous HGNC Symbols for GINM1 Gene

  • C6orf72

Previous GeneCards Identifiers for GINM1 Gene

  • GC06P149888

Summaries for GINM1 Gene

GeneCards Summary for GINM1 Gene

GINM1 (Glycoprotein Integral Membrane 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GINM1 Gene

Genomics for GINM1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for GINM1 Gene

149,566,294 bp from pter
149,591,748 bp from pter
25,455 bases
Plus strand

Genomic View for GINM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for GINM1 Gene

No data available for Regulatory Elements for GINM1 Gene

Proteins for GINM1 Gene

  • Protein details for GINM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Glycoprotein integral membrane protein 1
    Protein Accession:
    Secondary Accessions:
    • B2RDY7
    • E1P5A2

    Protein attributes for GINM1 Gene

    330 amino acids
    Molecular mass:
    36840 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GINM1 Gene

Proteomics data for GINM1 Gene at MOPED

Post-translational modifications for GINM1 Gene

  • Ubiquitination at Lys 294, Lys 301, Lys 319, and Lys 327
  • Modification sites at PhosphoSitePlus

Other Protein References for GINM1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GINM1 Gene

Domains & Families for GINM1 Gene

Protein Domains for GINM1 Gene


Suggested Antigen Peptide Sequences for GINM1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GINM1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for GINM1 Gene

Function for GINM1 Gene

Phenotypes for GINM1 Gene

genes like me logo Genes that share phenotypes with GINM1: view

Animal Model Products

miRNA for GINM1 Gene

miRTarBase miRNAs that target GINM1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GINM1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for GINM1 Gene

Localization for GINM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GINM1 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

Jensen Localization Image for GINM1 Gene COMPARTMENTS Subcellular localization image for GINM1 gene
Compartment Confidence
extracellular 5
nucleus 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for GINM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with GINM1: view

Pathways & Interactions for GINM1 Gene

SuperPathways for GINM1 Gene

No Data Available

Interacting Proteins for GINM1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
Selected Interacting proteins: ENSP00000356389 for GINM1 Gene via STRING

Symbol External ID(s) Details

Gene Ontology (GO) - Biological Process for GINM1 Gene


No data available for Pathways by source and SIGNOR curated interactions for GINM1 Gene

Drugs & Compounds for GINM1 Gene

No Compound Related Data Available

Transcripts for GINM1 Gene

mRNA/cDNA for GINM1 Gene

Unigene Clusters for GINM1 Gene

Glycoprotein integral membrane 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GINM1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GINM1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8
SP1: -
SP2: -

Relevant External Links for GINM1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for GINM1 Gene

mRNA expression in normal human tissues for GINM1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for GINM1 Gene

SOURCE GeneReport for Unigene cluster for GINM1 Gene Hs.438872

genes like me logo Genes that share expression patterns with GINM1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for GINM1 Gene

Orthologs for GINM1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for GINM1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia GINM1 35
  • 88.82 (n)
  • 87.2 (a)
MGC133692 36
  • 87 (a)
(Canis familiaris)
Mammalia GINM1 35
  • 88.07 (n)
  • 85.28 (a)
GINM1 36
  • 80 (a)
(Mus musculus)
Mammalia Ginm1 35
  • 80.94 (n)
  • 74.62 (a)
Ginm1 16
Ginm1 36
  • 74 (a)
(Pan troglodytes)
Mammalia GINM1 35
  • 99.29 (n)
  • 99.39 (a)
GINM1 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Ginm1 35
  • 81.81 (n)
  • 75 (a)
(Monodelphis domestica)
Mammalia GINM1 36
  • 64 (a)
(Ornithorhynchus anatinus)
Mammalia GINM1 36
  • 54 (a)
(Gallus gallus)
Aves C3H6ORF72 35
  • 68.05 (n)
  • 60.51 (a)
C3H6ORF72 36
  • 59 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 56 (a)
-- 36
  • 57 (a)
(Danio rerio)
Actinopterygii si:dkey-15j16.2 35
  • 49.75 (n)
  • 35.34 (a)
ginm1 36
  • 28 (a)
Species with no ortholog for GINM1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for GINM1 Gene

Gene Tree for GINM1 (if available)
Gene Tree for GINM1 (if available)

Paralogs for GINM1 Gene

No data available for Paralogs for GINM1 Gene

Variants for GINM1 Gene

Sequence variations from dbSNP and Humsavar for GINM1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs761618 -- 149,577,111(+) GGCCC(C/T)GCCTC intron-variant
rs1065333 -- 149,591,408(+) CAAAA(A/G)AAAAA downstream-variant-500B
rs1137086 -- 149,582,461(+) TGGAA(A/G)AGTTT reference, missense
rs1137089 -- 149,591,088(+) AGATC(A/G)AGACC downstream-variant-500B
rs4039600 -- 149,576,319(-) TGCCA(C/T)GTTGT intron-variant

Variation tolerance for GINM1 Gene

Residual Variation Intolerance Score: 58.64% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.99; 49.79% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GINM1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GINM1 Gene

Disorders for GINM1 Gene

Relevant External Links for GINM1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with GINM1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GINM1 Gene

Publications for GINM1 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 67
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 67

Products for GINM1 Gene

Sources for GINM1 Gene

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