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Aliases for GHITM Gene

Aliases for GHITM Gene

  • Growth Hormone Inducible Transmembrane Protein 2 3 5
  • Transmembrane BAX Inhibitor Motif-Containing Protein 5 3 4
  • Mitochondrial Morphology And Cristae Structure 1 3 4
  • Transmembrane BAX Inhibitor Motif Containing 5 2 3
  • Dermal Papilla-Derived Protein 2 3 4
  • TMBIM5 3 4
  • DERP2 3 4
  • MICS1 3 4
  • Growth Hormone-Inducible Transmembrane Protein 3
  • HSPC282 3
  • PTD010 3
  • My021 3

External Ids for GHITM Gene

Previous GeneCards Identifiers for GHITM Gene

  • GC10P084856
  • GC10P085121
  • GC10P086030
  • GC10P085563
  • GC10P085889
  • GC10P079745

Summaries for GHITM Gene

GeneCards Summary for GHITM Gene

GHITM (Growth Hormone Inducible Transmembrane Protein) is a Protein Coding gene.

UniProtKB/Swiss-Prot for GHITM Gene

  • Required for the mitochondrial tubular network and cristae organization. Involved in apoptotic release of cytochrome c.

Gene Wiki entry for GHITM Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GHITM Gene

Genomics for GHITM Gene

Regulatory Elements for GHITM Gene

Enhancers for GHITM Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around GHITM on UCSC Golden Path with GeneCards custom track

Promoters for GHITM Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around GHITM on UCSC Golden Path with GeneCards custom track

Genomic Location for GHITM Gene

Chromosome:
10
Start:
84,139,429 bp from pter
End:
84,153,555 bp from pter
Size:
14,127 bases
Orientation:
Plus strand

Genomic View for GHITM Gene

Genes around GHITM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GHITM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GHITM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GHITM Gene

Proteins for GHITM Gene

  • Protein details for GHITM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H3K2-GHITM_HUMAN
    Recommended name:
    Growth hormone-inducible transmembrane protein
    Protein Accession:
    Q9H3K2
    Secondary Accessions:
    • A8K9Z9
    • D3DWE0
    • O95894
    • Q5VT95
    • Q9H0P2

    Protein attributes for GHITM Gene

    Size:
    345 amino acids
    Molecular mass:
    37205 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GHITM Gene

Post-translational modifications for GHITM Gene

  • Ubiquitination at Lys 63
  • Modification sites at PhosphoSitePlus

Other Protein References for GHITM Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GHITM Gene

Domains & Families for GHITM Gene

Gene Families for GHITM Gene

Protein Domains for GHITM Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GHITM Gene

Graphical View of Domain Structure for InterPro Entry

Q9H3K2

UniProtKB/Swiss-Prot:

GHITM_HUMAN :
  • Belongs to the BI1 family.
Family:
  • Belongs to the BI1 family.
genes like me logo Genes that share domains with GHITM: view

Function for GHITM Gene

Molecular function for GHITM Gene

UniProtKB/Swiss-Prot Function:
Required for the mitochondrial tubular network and cristae organization. Involved in apoptotic release of cytochrome c.

Gene Ontology (GO) - Molecular Function for GHITM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding IPI 21903422
genes like me logo Genes that share ontologies with GHITM: view

Phenotypes for GHITM Gene

genes like me logo Genes that share phenotypes with GHITM: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GHITM Gene

Localization for GHITM Gene

Subcellular locations from UniProtKB/Swiss-Prot for GHITM Gene

Mitochondrion inner membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GHITM Gene COMPARTMENTS Subcellular localization image for GHITM gene
Compartment Confidence
extracellular 5
mitochondrion 5
plasma membrane 3
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for GHITM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005743 mitochondrial inner membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with GHITM: view

Pathways & Interactions for GHITM Gene

SuperPathways for GHITM Gene

No Data Available

Interacting Proteins for GHITM Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000361207%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000405965%0d%0a
Selected Interacting proteins: ENSP00000361207 Q9H3K2-GHITM_HUMAN for GHITM Gene via STRING UniProtKB IID

Gene Ontology (GO) - Biological Process for GHITM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with GHITM: view

No data available for Pathways by source and SIGNOR curated interactions for GHITM Gene

Drugs & Compounds for GHITM Gene

No Compound Related Data Available

Transcripts for GHITM Gene

mRNA/cDNA for GHITM Gene

Unigene Clusters for GHITM Gene

Growth hormone inducible transmembrane protein:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GHITM Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6a · 6b ^ 7a · 7b · 7c · 7d · 7e ^ 8 ^ 9a · 9b ^ 10 ^ 11
SP1: - - - - - -
SP2: - - - - - - - - -
SP3: - - - - - - -
SP4: - - - - -
SP5: - - - -
SP6: - - - - -
SP7: - - - - - - - -
SP8: -
SP9: - - -

Relevant External Links for GHITM Gene

GeneLoc Exon Structure for
GHITM
ECgene alternative splicing isoforms for
GHITM

Expression for GHITM Gene

mRNA expression in normal human tissues for GHITM Gene

Protein differential expression in normal tissues from HIPED for GHITM Gene

This gene is overexpressed in Nasal epithelium (58.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GHITM Gene



Protein tissue co-expression partners for GHITM Gene

NURSA nuclear receptor signaling pathways regulating expression of GHITM Gene:

GHITM

SOURCE GeneReport for Unigene cluster for GHITM Gene:

Hs.352656
genes like me logo Genes that share expression patterns with GHITM: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GHITM Gene

Orthologs for GHITM Gene

This gene was present in the common ancestor of animals.

Orthologs for GHITM Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GHITM 34
  • 90.24 (n)
  • 93.91 (a)
GHITM 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GHITM 34
  • 90.92 (n)
  • 92.17 (a)
GHITM 35
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ghitm 34
  • 90.53 (n)
  • 91.88 (a)
Ghitm 16
Ghitm 35
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GHITM 34
  • 99.52 (n)
  • 99.42 (a)
GHITM 35
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ghitm 34
  • 88.79 (n)
  • 90.14 (a)
oppossum
(Monodelphis domestica)
Mammalia GHITM 35
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GHITM 35
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves GHITM 34
  • 71.01 (n)
  • 72.75 (a)
GHITM 35
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GHITM 35
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ghitm 34
  • 70.63 (n)
  • 75.07 (a)
Str.6400 34
African clawed frog
(Xenopus laevis)
Amphibia ghitm-prov 34
zebrafish
(Danio rerio)
Actinopterygii ghitm 34
  • 59.96 (n)
  • 63.91 (a)
zgc66108 34
ghitm 35
  • 65 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10257 34
fruit fly
(Drosophila melanogaster)
Insecta CG1287 36
  • 49 (a)
CG2076 36
  • 54 (a)
CG2076 34
  • 53.64 (n)
  • 52.98 (a)
CG1287 35
  • 45 (a)
OneToMany
CG2076 35
  • 46 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009883 34
  • 55.63 (n)
  • 53.31 (a)
worm
(Caenorhabditis elegans)
Secernentea K11H12.8 34
  • 56.69 (n)
  • 54.93 (a)
K11H12.8 35
  • 46 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 69 (a)
OneToOne
Species where no ortholog for GHITM was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GHITM Gene

ENSEMBL:
Gene Tree for GHITM (if available)
TreeFam:
Gene Tree for GHITM (if available)

Paralogs for GHITM Gene

(1) SIMAP similar genes for GHITM Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with GHITM: view

No data available for Paralogs for GHITM Gene

Variants for GHITM Gene

Sequence variations from dbSNP and Humsavar for GHITM Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs3814214 -- 84,139,105(-) GTCTG(C/T)TTCTG upstream-variant-2KB
rs3814215 -- 84,138,158(-) ATGTG(G/T)ATAAT upstream-variant-2KB
rs3816716 -- 84,142,638(+) TCTTT(A/C/G)TTTGC intron-variant
rs3829861 -- 84,139,503(-) GCATG(A/T)CGCAA utr-variant-5-prime
rs3829862 -- 84,139,046(-) ACATC(C/G)AGAAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for GHITM Gene

Variant ID Type Subtype PubMed ID
nsv1046749 CNV gain 25217958
nsv1141879 OTHER inversion 24896259
nsv551745 CNV gain 21841781

Variation tolerance for GHITM Gene

Residual Variation Intolerance Score: 31.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.88; 48.42% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GHITM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GHITM

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GHITM Gene

Disorders for GHITM Gene

Relevant External Links for GHITM

Genetic Association Database (GAD)
GHITM
Human Genome Epidemiology (HuGE) Navigator
GHITM
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GHITM

No disorders were found for GHITM Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GHITM Gene

Publications for GHITM Gene

  1. MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancer. (PMID: 20819778) Zhang X. … Wu X. (Carcinogenesis 2010) 3 46 65
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 65
  3. Identification of a novel protein MICS1 that is involved in maintenance of mitochondrial morphology and apoptotic release of cytochrome c. (PMID: 18417609) Oka T. … Mihara K. (Mol. Biol. Cell 2008) 3 4 65
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 46 65
  5. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 65

Products for GHITM Gene

Sources for GHITM Gene

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