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Aliases for GHET1 Gene

Subcategory (RNA class) for GHET1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for GHET1 Gene

  • Gastric Carcinoma Proliferation Enhancing Transcript 1 2 3 5
  • Gastric Carcinoma High Expressed Transcript 1 2 3
  • LncRNA-GHET1 3

External Ids for GHET1 Gene

Previous GeneCards Identifiers for GHET1 Gene

  • GC07U903701
  • GC07P148996
  • GC07P148998
  • GC07P149000
  • GC07P149002
  • GC07P149005

Summaries for GHET1 Gene

Entrez Gene Summary for GHET1 Gene

  • This gene encodes an unspliced long non-coding RNA that has been suggested to promote the proliferation of gastric carcinoma cells and bladder cancer cells. [provided by RefSeq, Dec 2014]

GeneCards Summary for GHET1 Gene

GHET1 (Gastric Carcinoma Proliferation Enhancing Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for GHET1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GHET1 Gene

Genomics for GHET1 Gene

Regulatory Elements for GHET1 Gene

Enhancers for GHET1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H149026 1.1 ENCODE 0.3 +40.7 40679 3 HDGF FOXA2 PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF783 LOC155060 ZNF767P PDIA4 ENSG00000271664 ZNF777 ZNF212 ZNF398 GHET1
GH07H149005 0.8 ENCODE 0.4 +18.4 18437 1 RB1 ARID4B SIN3A ZNF2 RAD21 GLIS2 EGR1 ZNF143 RUNX3 CREM PDIA4 GHET1
GH07H149007 0.5 ENCODE 0.3 +20.2 20208 0 CTCF RAD21 ZNF2 PDIA4 RNU6-650P GHET1
GH07H149025 0.4 ENCODE 0.3 +38.5 38517 0 ZNF121 GATA3 PDIA4 GHET1
GH07H149022 0.4 ENCODE 0.3 +36.2 36177 1 ZNF692 PDIA4 GHET1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GHET1 on UCSC Golden Path with GeneCards custom track

Promoters for GHET1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000219574 -27 1401 PKNOX1 ARNT SIN3A ZNF2 ZNF766 ZNF143 FOS SP3 NFYC REST

Genomic Location for GHET1 Gene

Chromosome:
7
Start:
148,987,527 bp from pter
End:
148,989,432 bp from pter
Size:
1,906 bases
Orientation:
Plus strand

Genomic View for GHET1 Gene

Genes around GHET1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GHET1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GHET1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GHET1 Gene

Proteins for GHET1 Gene

Post-translational modifications for GHET1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GHET1 Gene

Domains & Families for GHET1 Gene

Gene Families for GHET1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with GHET1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GHET1 Gene

Function for GHET1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GHET1 Gene

Localization for GHET1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GHET1 Gene

Pathways & Interactions for GHET1 Gene

SuperPathways for GHET1 Gene

No Data Available

Interacting Proteins for GHET1 Gene

Gene Ontology (GO) - Biological Process for GHET1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GHET1 Gene

Drugs & Compounds for GHET1 Gene

No Compound Related Data Available

Transcripts for GHET1 Gene

mRNA/cDNA for GHET1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GHET1 Gene

No ASD Table

Relevant External Links for GHET1 Gene

GeneLoc Exon Structure for
GHET1
ECgene alternative splicing isoforms for
GHET1

Expression for GHET1 Gene

NURSA nuclear receptor signaling pathways regulating expression of GHET1 Gene:

GHET1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GHET1 Gene

Orthologs for GHET1 Gene

Evolution for GHET1 Gene

ENSEMBL:
Gene Tree for GHET1 (if available)
TreeFam:
Gene Tree for GHET1 (if available)

No data available for Orthologs for GHET1 Gene

Paralogs for GHET1 Gene

No data available for Paralogs for GHET1 Gene

Variants for GHET1 Gene

Sequence variations from dbSNP and Humsavar for GHET1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000809182 -- 148,986,181(+) GATGA(G/T)GAGGC upstream-variant-2KB
rs1000882778 -- 148,985,871(+) AGATC(A/G)CGCCA upstream-variant-2KB
rs1001158920 -- 148,989,673(+) AAAAA(C/T)ATGGA downstream-variant-500B
rs1001427014 -- 148,987,141(+) AAAAG(A/G)CTAGT nc-transcript-variant, upstream-variant-2KB
rs1001427704 -- 148,989,526(+) TGGAG(A/T)TTCCT downstream-variant-500B

Relevant External Links for GHET1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GHET1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GHET1 Gene

Disorders for GHET1 Gene

Relevant External Links for GHET1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GHET1

No disorders were found for GHET1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GHET1 Gene

Publications for GHET1 Gene

  1. Long non-coding RNA GHET1 promotes gastric carcinoma cell proliferation by increasing c-Myc mRNA stability. (PMID: 24397586) Yang F … Fang G (The FEBS journal 2014) 2 3 60
  2. Knockdown of Long Noncoding RNA GHET1 Inhibits Cell Proliferation and Invasion of Colorectal Cancer. (PMID: 27131316) Zhou J … Tian B (Oncology research 2016) 3 60
  3. Knockdown of Long Noncoding RNA GHET1 Inhibits Cell Proliferation and Invasion of Colorectal Cancer. (PMID: 27931286) Zhou J … Tian B (Oncology research 2016) 3 60
  4. Long noncoding RNA GHET1 promotes the development of bladder cancer. (PMID: 25400817) Li LJ … Weng ZL (International journal of clinical and experimental pathology 2014) 3 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for GHET1 Gene

Sources for GHET1 Gene

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