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Aliases for GCSH Gene

Aliases for GCSH Gene

  • Glycine Cleavage System Protein H (Aminomethyl Carrier) 2 3
  • Lipoic Acid-Containing Protein 2 3 4
  • NKH 3 6
  • Glycine Cleavage System H Protein, Mitochondrial 3
  • Mitochondrial Glycine Cleavage System H-Protein 3
  • GCE 3

External Ids for GCSH Gene

Previous GeneCards Identifiers for GCSH Gene

  • GC16M072048
  • GC16M082076
  • GC16M080854
  • GC01M165211
  • GC16M080896
  • GC16M079673
  • GC16M081115
  • GC16M066872

Summaries for GCSH Gene

Entrez Gene Summary for GCSH Gene

  • Degradation of glycine is brought about by the glycine cleavage system, which is composed of four mitochondrial protein components: P protein (a pyridoxal phosphate-dependent glycine decarboxylase), H protein (a lipoic acid-containing protein), T protein (a tetrahydrofolate-requiring enzyme), and L protein (a lipoamide dehydrogenase). The protein encoded by this gene is the H protein, which transfers the methylamine group of glycine from the P protein to the T protein. Defects in this gene are a cause of nonketotic hyperglycinemia (NKH). Two transcript variants, one protein-coding and the other probably not protein-coding,have been found for this gene. Also, several transcribed and non-transcribed pseudogenes of this gene exist throughout the genome.[provided by RefSeq, Jan 2010]

GeneCards Summary for GCSH Gene

GCSH (Glycine Cleavage System Protein H (Aminomethyl Carrier)) is a Protein Coding gene. Diseases associated with GCSH include gcsh-related glycine encephalopathy and atypical glycine encephalopathy. Among its related pathways are Glycine, serine and threonine metabolism and Glyoxylate and dicarboxylate metabolism. GO annotations related to this gene include enzyme binding and aminomethyltransferase activity.

UniProtKB/Swiss-Prot for GCSH Gene

  • The glycine cleavage system catalyzes the degradation of glycine. The H protein (GCSH) shuttles the methylamine group of glycine from the P protein (GLDC) to the T protein (GCST)

Gene Wiki entry for GCSH Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCSH Gene

Genomics for GCSH Gene

Regulatory Elements for GCSH Gene

Genomic Location for GCSH Gene

Start:
81,081,947 bp from pter
End:
81,096,403 bp from pter
Size:
14,457 bases
Orientation:
Minus strand

Genomic View for GCSH Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GCSH Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCSH Gene

Proteins for GCSH Gene

  • Protein details for GCSH Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P23434-GCSH_HUMAN
    Recommended name:
    Glycine cleavage system H protein, mitochondrial
    Protein Accession:
    P23434
    Secondary Accessions:
    • Q9H1E9

    Protein attributes for GCSH Gene

    Size:
    173 amino acids
    Molecular mass:
    18885 Da
    Cofactor:
    Name=(R)-lipoate; Xref=ChEBI:CHEBI:83088; Note=Binds 1 lipoyl cofactor covalently.;
    Quaternary structure:
    • Interacts with GLDC (By similarity). The glycine cleavage system is composed of four proteins: P (GLDC), T (GCST), L (DLD) and H (GCSH).

neXtProt entry for GCSH Gene

Proteomics data for GCSH Gene at MOPED

Post-translational modifications for GCSH Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for GCSH Gene

No data available for DME Specific Peptides for GCSH Gene

Domains for GCSH Gene

Graphical View of Domain Structure for InterPro Entry

P23434

UniProtKB/Swiss-Prot:

GCSH_HUMAN :
  • P23434
Domain:
  • Contains 1 lipoyl-binding domain.
Family:
  • Belongs to the GcvH family.
genes like me logo Genes that share domains with GCSH: view

No data available for Gene Families for GCSH Gene

Function for GCSH Gene

Molecular function for GCSH Gene

UniProtKB/Swiss-Prot Function: The glycine cleavage system catalyzes the degradation of glycine. The H protein (GCSH) shuttles the methylamine group of glycine from the P protein (GLDC) to the T protein (GCST)

Gene Ontology (GO) - Molecular Function for GCSH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004047 aminomethyltransferase activity IEA --
GO:0019899 enzyme binding IEA --
genes like me logo Genes that share ontologies with GCSH: view

miRNA for GCSH Gene

miRTarBase miRNAs that target GCSH

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for GCSH Gene

Localization for GCSH Gene

Subcellular locations from UniProtKB/Swiss-Prot for GCSH Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GCSH Gene COMPARTMENTS Subcellular localization image for GCSH gene
Compartment Confidence
mitochondrion 5
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for GCSH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0005960 glycine cleavage complex IEA --
genes like me logo Genes that share ontologies with GCSH: view

Pathways for GCSH Gene

genes like me logo Genes that share pathways with GCSH: view

Pathways by source for GCSH Gene

Gene Ontology (GO) - Biological Process for GCSH Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006546 glycine catabolic process TAS 1671321
GO:0019464 glycine decarboxylation via glycine cleavage system IEA --
GO:0032259 methylation IEA --
genes like me logo Genes that share ontologies with GCSH: view

Compounds for GCSH Gene

(2) HMDB Compounds for GCSH Gene

Compound Synonyms Cas Number PubMed IDs
Glycine
  • 2-Aminoacetate
56-40-6
Lipoic acid
  • (+)-alpha-Lipoate
1077-28-7

(3) Drugbank Compounds for GCSH Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
6-(Hydroxyethyldithio)-8-(Aminomethylthio)Octanoic Acid
target
Dihydrolipoic Acid
462-20-4 target
Glycine
  • 2-Aminoacetic acid
56-40-6 target
genes like me logo Genes that share compounds with GCSH: view

Transcripts for GCSH Gene

Unigene Clusters for GCSH Gene

Glycine cleavage system protein H (aminomethyl carrier):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GCSH Gene

No ASD Table

Relevant External Links for GCSH Gene

GeneLoc Exon Structure for
GCSH
ECgene alternative splicing isoforms for
GCSH

Expression for GCSH Gene

mRNA expression in normal human tissues for GCSH Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GCSH Gene

SOURCE GeneReport for Unigene cluster for GCSH Gene Hs.546256

genes like me logo Genes that share expressions with GCSH: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GCSH Gene

Orthologs for GCSH Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GCSH Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GCSH 35
  • 99.04 (n)
  • 100 (a)
GCSH 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 85 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
-- 36
  • 79 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
-- 36
  • 80 (a)
OneToMany
GCSH 36
  • 90 (a)
OneToMany
LOC101905887 35
  • 89.84 (n)
  • 89.63 (a)
dog
(Canis familiaris)
Mammalia GCSH 35
  • 89.6 (n)
  • 87.86 (a)
GCSH 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gcsh 35
  • 83.73 (n)
  • 81.76 (a)
Gcsh 16
Gcsh 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GCSH 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gcsh 35
  • 85.1 (n)
  • 86.47 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 78 (a)
OneToMany
GCSH 35
  • 76.89 (n)
  • 75.46 (a)
GCSH 36
  • 75 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia GCSH 36
  • 72 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia gcsh 35
  • 70.41 (n)
  • 68.05 (a)
zebrafish
(Danio rerio)
Actinopterygii gcsha 35
  • 68.4 (n)
  • 71.11 (a)
gcshb 36
  • 60 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006548 35
  • 55.77 (n)
  • 55.97 (a)
fruit fly
(Drosophila melanogaster)
Insecta ppl 35
  • 55.07 (n)
  • 53.62 (a)
ppl 36
  • 47 (a)
OneToOne
ppl 37
  • 53 (a)
worm
(Caenorhabditis elegans)
Secernentea F52A8.5 35
  • 55.88 (n)
  • 52.94 (a)
F52A8.5 36
  • 47 (a)
OneToMany
gcsh-1 36
  • 41 (a)
OneToMany
F52A8.5 37
  • 52 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADR396W 35
  • 46.61 (n)
  • 39.83 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GCV3 35
  • 51.59 (n)
  • 48.7 (a)
GCV3 36
  • 35 (a)
OneToOne
GCV3 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A03597g 35
  • 49.46 (n)
  • 43.23 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G35120 35
  • 54.89 (n)
  • 50 (a)
rice
(Oryza sativa)
Liliopsida Os02g0170100 35
  • 56.88 (n)
  • 49.21 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU08877 35
  • 47.74 (n)
  • 41.53 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes gcv3 35
  • 55.1 (n)
  • 47.93 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 31 (a)
OneToOne
Species with no ortholog for GCSH:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GCSH Gene

ENSEMBL:
Gene Tree for GCSH (if available)
TreeFam:
Gene Tree for GCSH (if available)

Paralogs for GCSH Gene

genes like me logo Genes that share paralogs with GCSH: view

No data available for Paralogs for GCSH Gene

Variants for GCSH Gene

Sequence variations from dbSNP and Humsavar for GCSH Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1410 -- 81,082,228(+) AAATT(G/T)CCTTT utr-variant-3-prime, nc-transcript-variant
rs1412 -- 81,082,237(+) TTTAA(A/G)AAGTA utr-variant-3-prime, nc-transcript-variant
rs1414 -- 81,082,252(+) TCCGT(A/G)AGTTA utr-variant-3-prime, nc-transcript-variant
rs874437 -- 81,095,890(-) GAGGG(G/T)AGGCC intron-variant
rs1050350 -- 81,082,675(-) ATATG(C/T)GTCTT utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for GCSH Gene

Variant ID Type Subtype PubMed ID
esv2422360 CNV Duplication 17116639
esv2751615 CNV Gain 17911159
esv1003113 CNV Deletion 20482838
esv2490578 CNV Deletion 19546169
esv2127465 CNV Deletion 18987734
esv2714774 CNV Deletion 23290073
esv6143 CNV Loss 19470904
esv1126856 CNV Deletion 17803354
nsv907005 CNV Loss 21882294

Relevant External Links for GCSH Gene

HapMap Linkage Disequilibrium report
GCSH
Human Gene Mutation Database (HGMD)
GCSH

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GCSH Gene

Disorders for GCSH Gene

(1) OMIM Diseases for GCSH Gene (238330)

UniProtKB/Swiss-Prot

GCSH_HUMAN
  • Non-ketotic hyperglycinemia (NKH) [MIM:605899]: Autosomal recessive disease characterized by accumulation of a large amount of glycine in body fluid and by severe neurological symptoms. Note=The disease is caused by mutations affecting the gene represented in this entry.

(2) University of Copenhagen DISEASES for GCSH Gene

(1) Novoseek inferred disease relationships for GCSH Gene

Disease -log(P) Hits PubMed IDs
hyperglycinemia nonketotic 95.6 2

Relevant External Links for GCSH

GeneTests
GCSH
GeneReviews
GCSH
Genetic Association Database (GAD)
GCSH
Human Genome Epidemiology (HuGE) Navigator
GCSH
genes like me logo Genes that share disorders with GCSH: view

Publications for GCSH Gene

  1. Comprehensive mutation analysis of GLDC, AMT, and GCSH in nonketotic hyperglycinemia. (PMID: 16450403) Kure S. … Matsubara Y. (Hum. Mutat. 2006) 3 23 48
  2. The glycine cleavage system: structure of a cDNA encoding human H- protein, and partial characterization of its gene in patients with hyperglycinemias. (PMID: 1671321) Koyata H. … Hiraga K. (Am. J. Hum. Genet. 1991) 2 3 4
  3. The primary structure of human H-protein of the glycine cleavage system deduced by cDNA cloning. (PMID: 2025283) Fujiwara K. … Motokawa Y. (Biochem. Biophys. Res. Commun. 1991) 2 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Fine mapping and association studies of a high-density lipoprotein cholesterol linkage region on chromosome 16 in French-Canadian subjects. (PMID: 19844255) Dastani Z. … Genest J. (Eur. J. Hum. Genet. 2010) 3 48

Products for GCSH Gene

Sources for GCSH Gene

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