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Aliases for GCOM2 Gene

Aliases for GCOM2 Gene

  • GRINL1B Complex Locus 2 (Pseudogene) 2 3 5
  • Glutamate Receptor, Ionotropic, N-Methyl D-Aspartate-Like 1B 2 3
  • GRINL1B 3 4
  • Glutamate Receptor-Like Protein 1B 4
  • GLURR2 3

External Ids for GCOM2 Gene

Previous HGNC Symbols for GCOM2 Gene

  • GRINL1B

Previous GeneCards Identifiers for GCOM2 Gene

  • GC04P068905

Summaries for GCOM2 Gene

GeneCards Summary for GCOM2 Gene

GCOM2 (GRINL1B Complex Locus 2 (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GCOM2 Gene

Genomics for GCOM2 Gene

Regulatory Elements for GCOM2 Gene

Enhancers for GCOM2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G068151 0.7 ENCODE 25.6 +114.1 114089 1.3 FOXA2 SAP130 ZMYM3 CEBPG FOSL1 FOS NFE2 HLF MAFG ZEB2 GCOM2 TMPRSS11GP TMPRSS11F TMPRSS11BNL TMPRSS11D FTLP10
GH04G067543 1.3 ENCODE dbSUPER 4.3 -493.3 -493284 2.8 HDGF PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 CENPC UBA6 LOC101927237 STAP1 GCOM2 GC04M067379
GH04G068271 0.9 Ensembl ENCODE 6 +234.8 234765 2.8 CTCF ZNF654 PKNOX1 TRIM22 REST CHD7 RAD21 HDAC2 SMC3 POU5F1 TMPRSS11B YTHDC1 GCOM2 ENSG00000250642
GH04G068266 1 Ensembl ENCODE 4.8 +229.3 229342 1.6 ETV1 JUN BACH1 ZNF175 ZNF644 FOSL1 ZNF316 GATA2 NFE2 SMARCE1 TMPRSS11B YTHDC1 GCOM2 ENSG00000250642
GH04G068267 0.6 ENCODE 6.8 +228.1 228133 0.4 MEF2D ZNF639 PKNOX1 GATA2 PBX2 FOXJ2 IRF1 TMPRSS11B YTHDC1 GCOM2 ENSG00000250642
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GCOM2 on UCSC Golden Path with GeneCards custom track

Promoters for GCOM2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000168912 185 399 ZBTB33

Genomic Location for GCOM2 Gene

Chromosome:
4
Start:
68,038,416 bp from pter
End:
68,042,511 bp from pter
Size:
4,096 bases
Orientation:
Plus strand

Genomic View for GCOM2 Gene

Genes around GCOM2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
GCOM2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GCOM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GCOM2 Gene

Proteins for GCOM2 Gene

  • Protein details for GCOM2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BZD3-GCOM2_HUMAN
    Recommended name:
    Putative GRINL1B complex locus protein 2
    Protein Accession:
    Q9BZD3

    Protein attributes for GCOM2 Gene

    Size:
    368 amino acids
    Molecular mass:
    41713 Da
    Quaternary structure:
    No Data Available

neXtProt entry for GCOM2 Gene

Post-translational modifications for GCOM2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for GCOM2 Gene

Domains & Families for GCOM2 Gene

Protein Domains for GCOM2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for GCOM2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BZD3

UniProtKB/Swiss-Prot:

GCOM2_HUMAN :
  • Belongs to the GRINL1 family.
Family:
  • Belongs to the GRINL1 family.
genes like me logo Genes that share domains with GCOM2: view

No data available for Gene Families for GCOM2 Gene

Function for GCOM2 Gene

Gene Ontology (GO) - Molecular Function for GCOM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with GCOM2: view

Phenotypes for GCOM2 Gene

GenomeRNAi human phenotypes for GCOM2:
genes like me logo Genes that share phenotypes with GCOM2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GCOM2 Gene

Localization for GCOM2 Gene

Gene Ontology (GO) - Cellular Components for GCOM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016591 DNA-directed RNA polymerase II, holoenzyme IBA --
genes like me logo Genes that share ontologies with GCOM2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for GCOM2 Gene

Pathways & Interactions for GCOM2 Gene

SuperPathways for GCOM2 Gene

No Data Available

Interacting Proteins for GCOM2 Gene

Gene Ontology (GO) - Biological Process for GCOM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0051685 maintenance of ER location IBA --
genes like me logo Genes that share ontologies with GCOM2: view

No data available for Pathways by source and SIGNOR curated interactions for GCOM2 Gene

Drugs & Compounds for GCOM2 Gene

No Compound Related Data Available

Transcripts for GCOM2 Gene

mRNA/cDNA for GCOM2 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for GCOM2 Gene

No ASD Table

Relevant External Links for GCOM2 Gene

GeneLoc Exon Structure for
GCOM2
ECgene alternative splicing isoforms for
GCOM2

Expression for GCOM2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for GCOM2 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for GCOM2 Gene



NURSA nuclear receptor signaling pathways regulating expression of GCOM2 Gene:

GCOM2
genes like me logo Genes that share expression patterns with GCOM2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GCOM2 Gene

Orthologs for GCOM2 Gene

Evolution for GCOM2 Gene

ENSEMBL:
Gene Tree for GCOM2 (if available)
TreeFam:
Gene Tree for GCOM2 (if available)

No data available for Orthologs for GCOM2 Gene

Paralogs for GCOM2 Gene

(2) SIMAP similar genes for GCOM2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with GCOM2: view

No data available for Paralogs for GCOM2 Gene

Variants for GCOM2 Gene

Sequence variations from dbSNP and Humsavar for GCOM2 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
VAR_054145 An acute myeloid leukemia sample

Relevant External Links for GCOM2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
GCOM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for GCOM2 Gene

Disorders for GCOM2 Gene

No disorders were found for GCOM2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GCOM2 Gene

Publications for GCOM2 Gene

  1. Assignment of GRINL1B, a glutamate receptor-like processed gene, to human chromosome 4q12 by in situ hybridization. (PMID: 12063407) Mohan Raj B.K. … Sciorra L.J. (Cytogenet. Cell Genet. 2001) 2 3 4 64
  2. DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome. (PMID: 18987736) Ley T.J. … Wilson R.K. (Nature 2008) 3 4 64
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64
  4. The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1. (PMID: 20811636) Giannone R.J. … Liu Y. (PLoS ONE 2010) 3 64

Products for GCOM2 Gene

Sources for GCOM2 Gene

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