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Aliases for GC22M041706 Gene

Subcategory (RNA class) for GC22M041706 Gene

snoRNA

Quality Score for this RNA gene is

4

Aliases for GC22M041706 Gene

No Aliases found

ORGUL Members for GC22M041706 Gene

No data available for External Ids for GC22M041706 Gene

Summaries for GC22M041706 Gene

GeneCards Summary for GC22M041706 Gene

GC22M041706 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC22M041706 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC22M041706 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC22M041706 Gene

Genomics for GC22M041706 Gene

Regulatory Elements for GC22M041706 Gene

Enhancers for GC22M041706 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H039316 0.5 ENCODE 0.7 +0.4 367 0 GLIS2 POLR2A PATZ1 SNORD83A SNORD83B GC22M041706 GC22M041624
GH22H039317 0.5 ENCODE 0.7 +0.8 787 0 CTCF GLIS2 POLR2A PATZ1 GC22M041706 SNORD83A SNORD83B GC22M041624
GH22H039313 0.5 ENCODE 0.7 +1.4 1367 0 GLIS2 POLR2A PATZ1 SUPT5H GC22M041706 SNORD83B SNORD83A GC22M041624
GH22H039314 0.4 ENCODE 0.7 +1.0 1047 0 CTCF POLR2A SYNGR1 PDGFB SNORD83A SNORD83B GC22M041706 GC22M041624
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC22M041706 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC22M041706 Gene

Chromosome:
22
Start:
39,315,212 bp from pter
End:
39,315,307 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for GC22M041706 Gene

Genes around GC22M041706 on UCSC Golden Path with GeneCards custom track

GC22M041706 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC22M041706 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC22M041706 Gene

Proteins for GC22M041706 Gene

Post-translational modifications for GC22M041706 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC22M041706 Gene

Domains & Families for GC22M041706 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC22M041706 Gene

Function for GC22M041706 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC22M041706 Gene

Localization for GC22M041706 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC22M041706 Gene

Pathways & Interactions for GC22M041706 Gene

SuperPathways for GC22M041706 Gene

No Data Available

Interacting Proteins for GC22M041706 Gene

Gene Ontology (GO) - Biological Process for GC22M041706 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC22M041706 Gene

Drugs & Compounds for GC22M041706 Gene

No Compound Related Data Available

Transcripts for GC22M041706 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC22M041706 Gene

No ASD Table

Relevant External Links for GC22M041706 Gene

GeneLoc Exon Structure for
GC22M041706

No data available for mRNA/cDNA for GC22M041706 Gene

Expression for GC22M041706 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC22M041706 Gene

Orthologs for GC22M041706 Gene

No data available for Orthologs and Evolution for GC22M041706 Gene

Paralogs for GC22M041706 Gene

No data available for Paralogs for GC22M041706 Gene

Variants for GC22M041706 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC22M041706 Gene

Disorders for GC22M041706 Gene

No disorders were found for GC22M041706 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC22M041706 Gene

Publications for GC22M041706 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 1
  5. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1

Products for GC22M041706 Gene

Sources for GC22M041706 Gene

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