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Aliases for GC20P002854 Gene

Subcategory (RNA class) for GC20P002854 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC20P002854 Gene

No Aliases found

ORGUL Members for GC20P002854 Gene

No data available for External Ids for GC20P002854 Gene

Summaries for GC20P002854 Gene

GeneCards Summary for GC20P002854 Gene

GC20P002854 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC20P002854 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC20P002854

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC20P002854 Gene

Genomics for GC20P002854 Gene

Regulatory Elements for GC20P002854 Gene

Enhancers for GC20P002854 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G002651 1.1 ENCODE 0.7 -1.0 -1006 4.2 HDGF HNRNPUL1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 IDH3B ZNF343 VPS16 ITPA NOP56 GC20P002854 MIR1292
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC20P002854 on UCSC Golden Path with GeneCards custom track

Genomic Location for GC20P002854 Gene

Chromosome:
20
Start:
2,654,211 bp from pter
End:
2,654,286 bp from pter
Size:
76 bases
Orientation:
Plus strand

Genomic View for GC20P002854 Gene

Genes around GC20P002854 on UCSC Golden Path with GeneCards custom track

GC20P002854 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC20P002854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC20P002854 Gene

ORGUL Member Location for GC20P002854 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC20P002854 Gene

Proteins for GC20P002854 Gene

Post-translational modifications for GC20P002854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC20P002854 Gene

Domains & Families for GC20P002854 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC20P002854 Gene

Function for GC20P002854 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC20P002854 Gene

Localization for GC20P002854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for GC20P002854 Gene

Pathways & Interactions for GC20P002854 Gene

SuperPathways for GC20P002854 Gene

No Data Available

Interacting Proteins for GC20P002854 Gene

Gene Ontology (GO) - Biological Process for GC20P002854 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC20P002854 Gene

Drugs & Compounds for GC20P002854 Gene

No Compound Related Data Available

Transcripts for GC20P002854 Gene

fRNAdb Secondary structures for GC20P002854 Gene

  • FR358878

Alternative Splicing Database (ASD) splice patterns (SP) for GC20P002854 Gene

No ASD Table

Relevant External Links for GC20P002854 Gene

GeneLoc Exon Structure for
GC20P002854

No data available for mRNA/cDNA for GC20P002854 Gene

Expression for GC20P002854 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC20P002854 Gene

Orthologs for GC20P002854 Gene

No data available for Orthologs and Evolution for GC20P002854 Gene

Paralogs for GC20P002854 Gene

No data available for Paralogs for GC20P002854 Gene

Variants for GC20P002854 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC20P002854 Gene

Disorders for GC20P002854 Gene

No disorders were found for GC20P002854 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC20P002854 Gene

Publications for GC20P002854 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1
  3. Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro. (PMID: 12215523) Galardi S. … Bozzoni I. (Mol. Cell. Biol. 2002) 1
  4. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) HA1ttenhofer A. … Brosius J. (EMBO J. 2001) 1

Products for GC20P002854 Gene

Sources for GC20P002854 Gene

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