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Aliases for GC17P034446 Gene

Subcategory (RNA class) for GC17P034446 Gene

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Quality Score for this RNA gene is

10.4

Aliases for GC17P034446 Gene

No Aliases found

ORGUL Members for GC17P034446 Gene

No data available for External Ids for GC17P034446 Gene

Summaries for GC17P034446 Gene

GeneCards Summary for GC17P034446 Gene

GC17P034446 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC17P034446 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P034446

Additional gene information for GC17P034446 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P034446 Gene

Genomics for GC17P034446 Gene

Regulatory Elements for GC17P034446 Gene

Enhancers for GC17P034446 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H034412 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -30.8 -30817 1.8 PKNOX1 NFRKB TCF12 GATA2 CAVIN1 ELF1 ZNF592 MEF2D TFDP1 MAFF CCL2 CCL7 C17orf102 TMEM132E ASIC2 CCL1 CCL8 GC17P034446 GC17M034364
GH17H034442 0.6 dbSUPER 0.7 +1.4 1436 5.9 CTCF ZNF654 ZFP3 SMC3 HNF4A REST RAD21 C17orf102 TMEM132E ASIC2 GC17P034446 LOC105371738
GH17H034399 1.2 FANTOM5 ENCODE dbSUPER 0.3 -44.8 -44766 0.4 ATF1 L3MBTL2 NR4A1 MAX CEBPG ZNF592 HMBOX1 NR2C2 MGA CCL7 CCL1 CCL8 CCL2 GC17M034364 GC17P034446
GH17H034387 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -56.5 -56530 0.9 SMARCE1 ATF1 MTA2 ZBTB11 MAFG DPF2 ZNF592 FOSL1 ZNF316 SMARCA4 CCL1 CCL2 CCL7 CCL8 GC17M034364 GC17P034446
GH17H034378 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -65.2 -65186 0.8 CTCF CEBPG BMI1 EBF1 BATF RELA EED ATF7 ETV6 RUNX3 CCL1 CCL2 GC17M034364 GC17P034446
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around GC17P034446 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P034446 Gene

Genomic Locations for GC17P034446 Gene
chr17:34,443,986-34,444,077
(GRCh38/hg38)
Size:
92 bases
Orientation:
Plus strand

Genomic View for GC17P034446 Gene

Genes around GC17P034446 on UCSC Golden Path with GeneCards custom track

GC17P034446 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P034446 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P034446 Gene

ORGUL Member Location for GC17P034446 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P034446 Gene

Proteins for GC17P034446 Gene

Post-translational modifications for GC17P034446 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P034446 Gene

Domains & Families for GC17P034446 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P034446 Gene

Function for GC17P034446 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC17P034446 Gene

Localization for GC17P034446 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P034446 Gene

Pathways & Interactions for GC17P034446 Gene

SuperPathways for GC17P034446 Gene

No Data Available

Interacting Proteins for GC17P034446 Gene

Gene Ontology (GO) - Biological Process for GC17P034446 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P034446 Gene

Drugs & Compounds for GC17P034446 Gene

No Compound Related Data Available

Transcripts for GC17P034446 Gene

fRNAdb Secondary structures for GC17P034446 Gene

  • FR186414
  • FR081732

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P034446 Gene

No ASD Table

Relevant External Links for GC17P034446 Gene

GeneLoc Exon Structure for
GC17P034446

No data available for mRNA/cDNA for GC17P034446 Gene

Expression for GC17P034446 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P034446 Gene

Orthologs for GC17P034446 Gene

No data available for Orthologs and Evolution for GC17P034446 Gene

Paralogs for GC17P034446 Gene

No data available for Paralogs for GC17P034446 Gene

Variants for GC17P034446 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for GC17P034446 Gene

Disorders for GC17P034446 Gene

No disorders were found for GC17P034446 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P034446 Gene

Publications for GC17P034446 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC17P034446 Gene

Sources for GC17P034446 Gene

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