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GC16M027722 Gene(RNA Gene)

 

GCID:
GC16M027722
GIFtS:
3
Genes Participants
UDN Logo

Aliases for GC16M027722 Gene

Subcategory (RNA class) for GC16M027722 Gene

Y RNA

Quality Score for this RNA gene is

2

Aliases for GC16M027722 Gene

No Aliases found

ORGUL Members for GC16M027722 Gene

No data available for External Ids for GC16M027722 Gene

Summaries for GC16M027722 Gene

GeneCards Summary for GC16M027722 Gene

GC16M027722 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC16M027722 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC16M027722 Gene

Genomics for GC16M027722 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for GC16M027722 Gene

Promoters and enhancers for GC16M027722 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I027720 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 +0.6 590 2.6 TFAP4 NR2F1 HLF MAX EBF1 BATF NR2F2 RCOR1 MYC ENSG00000201371 GC16M027722 IL21R-AS1 LOC100128079 KIAA0556
GH16I027729 Enhancer 0.7 ENCODE dbSUPER 0.4 -7.3 -7283 0.2 POLR2A SCRT2 SPI1 EGR2 GC16M027722 ENSG00000201371 LOC105371157 KIAA0556
GH16I027724 Enhancer 0.3 dbSUPER 0.8 -2.4 -2441 0.3 HLF GC16M027722 ENSG00000201371 LOC105371157 KIAA0556
GH16I027725 Enhancer 0.3 dbSUPER 0.8 -2.8 -2816 0.2 POLR2A ENSG00000201371 GC16M027722 LOC105371157 KIAA0556
GH16I027719 Enhancer 0.3 dbSUPER 0.8 +2.4 2434 0.5 FOXP1 LOC100128079 GC16M027722 ENSG00000201371 KIAA0556
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC16M027722 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC16M027722 Gene

Genomic Locations for GC16M027722 Gene
chr16:27,722,285-27,722,392
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC16M027722 Gene

Genes around GC16M027722 on UCSC Golden Path with GeneCards custom track

GC16M027722 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC16M027722 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC16M027722 Gene

Proteins for GC16M027722 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for GC16M027722 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC16M027722 Gene

Domains & Families for GC16M027722 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC16M027722 Gene

Function for GC16M027722 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC16M027722 Gene

Localization for GC16M027722 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC16M027722 Gene

Pathways & Interactions for GC16M027722 Gene

SuperPathways for GC16M027722 Gene

PathCards logo More details on SuperPathways for GC16M027722
No Data Available

Interacting Proteins for GC16M027722 Gene

Gene Ontology (GO) - Biological Process for GC16M027722 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC16M027722 Gene

Drugs & Compounds for GC16M027722 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for GC16M027722 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for GC16M027722 Gene

No ASD Table

Relevant External Links for GC16M027722 Gene

GeneLoc Exon Structure for
GC16M027722

No data available for mRNA/cDNA for GC16M027722 Gene

Expression for GC16M027722 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC16M027722 Gene

Orthologs for GC16M027722 Gene

No data available for Orthologs and Evolution for GC16M027722 Gene

Paralogs for GC16M027722 Gene

No data available for Paralogs for GC16M027722 Gene

Variants for GC16M027722 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC16M027722 Gene

Disorders for GC16M027722 Gene

No disorders were found for GC16M027722 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC16M027722 Gene

Publications for GC16M027722 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC16M027722 Gene

Sources for GC16M027722 Gene

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